Rhodococcus Cloning And Expression Vectors

Data obtained from: USPTO Fulltext EMBL-EBI Pat DDBJ Pat NCBI GenBank
30 sequences found in this patent (in total)

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Displaying 1 - 10 of 30 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,140
Sequence Type
nucleotide
Locations
Claims, Detailed Description
Declared organism
Rhodococcus AN12
Determined organism
  • Shuttle vector pRHBR17

    Shuttle vector pRHBR17

    • Public DB hit
      GI:30313707
      AY180162
    • Hit length
      11,241 bp
    • E Value
      0E0
    • BLAST Score
      2,106.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AY180162
      10.14% cov
    • Alignment Length
      1,140 bp
    • CIGAR string
      1140M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628256
      AY178757
      1 of 2 hits reported for Rhodococcus erythropolis.
    • Hit length
      6,334 bp
    • E Value
      0E0
    • BLAST Score
      2,106.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AY178757
      18% cov
    • Alignment Length
      1,140 bp
    • CIGAR string
      1140M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pTip-istAB-sacB

    Cloning vector pTip-istAB-sacB

    • Public DB hit
      GI:293628573
      AB545980
    • Hit length
      12,453 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB545980
      9.15% cov
    • Alignment Length
      1,142 bp
  • Expression vector pNit-RT2

    Expression vector pNit-RT2

    • Public DB hit
      GI:51890504
      AB127605
    • Hit length
      6,062 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127605
      18.81% cov
    • Alignment Length
      1,142 bp
  • Expression vector pNit-RT1

    Expression vector pNit-RT1

    • Public DB hit
      GI:51890500
      AB127604
    • Hit length
      6,058 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127604
      18.82% cov
    • Alignment Length
      1,142 bp
  • Expression vector pNit-RC2

    Expression vector pNit-RC2

    • Public DB hit
      GI:51890496
      AB127603
    • Hit length
      6,231 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127603
      18.3% cov
    • Alignment Length
      1,142 bp
  • Expression vector pNit-RC1

    Expression vector pNit-RC1

    • Public DB hit
      GI:51890492
      AB127602
    • Hit length
      6,227 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127602
      18.31% cov
    • Alignment Length
      1,142 bp
  • Expression vector pTip-RT2

    Expression vector pTip-RT2

    • Public DB hit
      GI:51890466
      AB127597
    • Hit length
      8,279 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127597
      13.77% cov
    • Alignment Length
      1,142 bp
  • Expression vector pTip-RT1

    Expression vector pTip-RT1

    • Public DB hit
      GI:51890460
      AB127596
    • Hit length
      8,275 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127596
      13.78% cov
    • Alignment Length
      1,142 bp
  • Expression vector pTip-RC2

    Expression vector pTip-RC2

    • Public DB hit
      GI:51890454
      AB127595
    • Hit length
      8,456 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127595
      13.48% cov
    • Alignment Length
      1,142 bp
  • Expression vector pTip-RC1

    Expression vector pTip-RC1

    • Public DB hit
      GI:51890448
      AB127594
    • Hit length
      8,452 bp
    • E Value
      0E0
    • BLAST Score
      1,568.9 bits
    • Similarity
      91.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB127594
      13.49% cov
    • Alignment Length
      1,142 bp
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
2
Length
379
Sequence Type
peptide
Locations
Claims, Detailed Description, Summary
Declared organism
Rhodococcus AN12
Determined organism
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628257
      AAO31602
      1 of 2 hits reported for Rhodococcus erythropolis.
    • Hit length
      379 aa
    • E Value
      0E0
    • BLAST Score
      775 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAO31602
      100% cov
    • Alignment Length
      379 aa
    • CIGAR string
      379M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
3
Length
891
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Rhodococcus AN12
Determined organism
  • Shuttle vector pRHBR17

    Shuttle vector pRHBR17

    • Public DB hit
      GI:30313707
      AY180162
    • Hit length
      11,241 bp
    • E Value
      0E0
    • BLAST Score
      1,646.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AY180162
      7.93% cov
    • Alignment Length
      891 bp
    • CIGAR string
      891M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628256
      AY178757
      1 of 2 hits reported for Rhodococcus erythropolis.
    • Hit length
      6,334 bp
    • E Value
      0E0
    • BLAST Score
      1,646.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AY178757
      14.07% cov
    • Alignment Length
      891 bp
    • CIGAR string
      891M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
4
Length
296
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Rhodococcus AN12
Determined organism
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628258
      AAO31603
      1 of 2 hits reported for Rhodococcus erythropolis.
    • Hit length
      296 aa
    • E Value
      3.13E-172
    • BLAST Score
      609.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAO31603
      100% cov
    • Alignment Length
      296 aa
    • CIGAR string
      296M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
5
Length
6,334
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Rhodococcus AN12
Determined organism
  • Shuttle vector pRHBR17

    Shuttle vector pRHBR17

    • Public DB hit
      GI:30313707
      AY180162
    • Hit length
      11,241 bp
    • E Value
      0E0
    • BLAST Score
      11,697.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY180162
      56.35% cov
    • Alignment Length
      6,334 bp
    • CIGAR string
      6334M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628256
      AY178757
      1 of 2 hits reported for Rhodococcus erythropolis.
    • Hit length
      6,334 bp
    • E Value
      0E0
    • BLAST Score
      11,697.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY178757
      100% cov
    • Alignment Length
      6,334 bp
    • CIGAR string
      6334M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pTip-istAB-sacB

    Cloning vector pTip-istAB-sacB

    • Public DB hit
      GI:293628573
      AB545980
    • Hit length
      12,453 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB545980
      15.43% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RT2

    Expression vector pNit-RT2

    • Public DB hit
      GI:51890504
      AB127605
    • Hit length
      6,062 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127605
      31.69% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RT1

    Expression vector pNit-RT1

    • Public DB hit
      GI:51890500
      AB127604
    • Hit length
      6,058 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127604
      31.71% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RC2

    Expression vector pNit-RC2

    • Public DB hit
      GI:51890496
      AB127603
    • Hit length
      6,231 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127603
      30.83% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RC1

    Expression vector pNit-RC1

    • Public DB hit
      GI:51890492
      AB127602
    • Hit length
      6,227 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127602
      30.85% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RT2

    Expression vector pTip-RT2

    • Public DB hit
      GI:51890466
      AB127597
    • Hit length
      8,279 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127597
      23.2% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RT1

    Expression vector pTip-RT1

    • Public DB hit
      GI:51890460
      AB127596
    • Hit length
      8,275 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127596
      23.21% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RC2

    Expression vector pTip-RC2

    • Public DB hit
      GI:51890454
      AB127595
    • Hit length
      8,456 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127595
      22.72% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RC1

    Expression vector pTip-RC1

    • Public DB hit
      GI:51890448
      AB127594
    • Hit length
      8,452 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      30.34%
    • Alignment (schematic)

      SEQ ID NO 5
      30.34% cov
      AB127594
      22.73% cov
    • Alignment Length
      1,927 bp
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
6
Length
11,241
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Shuttle vector pRHBR17
Determined organism
  • Shuttle vector pRHBR17

    Shuttle vector pRHBR17

    • Public DB hit
      GI:30313707
      AY180162
    • Hit length
      11,241 bp
    • E Value
      0E0
    • BLAST Score
      20,759.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY180162
      100% cov
    • Alignment Length
      11,241 bp
    • CIGAR string
      11241M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628256
      AY178757
      1 of 2 hits reported for Rhodococcus erythropolis.
    • Hit length
      6,334 bp
    • E Value
      0E0
    • BLAST Score
      11,697.8 bits
    • Similarity
      100%
    • Coverage
      56.35%
    • Alignment (schematic)

      SEQ ID NO 6
      56.35% cov
      AY178757
      100% cov
    • Alignment Length
      6,334 bp
    • CIGAR string
      3590H6334M1317H mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:310763
      L08858
      1 of 9 hits reported for synthetic construct.
    • Hit length
      4,907 bp
    • E Value
      0E0
    • BLAST Score
      6,630.6 bits
    • Similarity
      100%
    • Coverage
      31.94%
    • Alignment (schematic)

      SEQ ID NO 6
      31.94% cov
      L08858
      73.16% cov
    • Alignment Length
      3,590 bp
  • unidentified cloning vector

    unidentified cloning vector

    • Public DB hit
      GI:208964
      J01753
      1 of 3 hits reported for unidentified cloning vector.
    • Hit length
      4,150 bp
    • E Value
      0E0
    • BLAST Score
      5,995.3 bits
    • Similarity
      99.85%
    • Coverage
      29.02%
    • Alignment (schematic)

      SEQ ID NO 6
      29.02% cov
      J01753
      78.58% cov
    • Alignment Length
      3,263 bp
  • Acetobacter pasteurianus

    Acetobacter pasteurianus

    • Public DB hit
      GI:71833817
      AM055747
    • Hit length
      4,484 bp
    • E Value
      0E0
    • BLAST Score
      5,637.1 bits
    • Similarity
      100%
    • Coverage
      27.15%
    • Alignment (schematic)

      SEQ ID NO 6
      27.15% cov
      AM055747
      68.06% cov
    • Alignment Length
      3,052 bp
  • Cloning vector svPHEP

    Cloning vector svPHEP

    • Public DB hit
      GI:310846
      L19900
    • Hit length
      9,201 bp
    • E Value
      0E0
    • BLAST Score
      5,339.8 bits
    • Similarity
      99.97%
    • Coverage
      25.75%
    • Alignment (schematic)

      SEQ ID NO 6
      25.75% cov
      L19900
      31.45% cov
    • Alignment Length
      2,894 bp
  • Cloning vector pTCF

    Cloning vector pTCF

    • Public DB hit
      GI:310738
      L19899
    • Hit length
      7,941 bp
    • E Value
      0E0
    • BLAST Score
      4,813.5 bits
    • Similarity
      99.81%
    • Coverage
      23.3%
    • Alignment (schematic)

      SEQ ID NO 6
      23.3% cov
      L19899
      33.03% cov
    • Alignment Length
      2,623 bp
  • Expression vector pEDMS1

    Expression vector pEDMS1

    • Public DB hit
      GI:329790867
      AB571797
    • Hit length
      7,909 bp
    • E Value
      0E0
    • BLAST Score
      4,229.9 bits
    • Similarity
      99.74%
    • Coverage
      20.54%
    • Alignment (schematic)

      SEQ ID NO 6
      20.54% cov
      AB571797
      29.17% cov
    • Alignment Length
      2,310 bp
  • Cloning vector pHRS-9

    Cloning vector pHRS-9

    • Public DB hit
      GI:31075616
      AY289598
    • Hit length
      8,530 bp
    • E Value
      0E0
    • BLAST Score
      3,993.6 bits
    • Similarity
      100%
    • Coverage
      19.23%
    • Alignment (schematic)

      SEQ ID NO 6
      19.23% cov
      AY289598
      25.35% cov
    • Alignment Length
      2,162 bp
  • Cloning vector pSUP202

    Cloning vector pSUP202

    • Public DB hit
      GI:45386989
      AY428809
    • Hit length
      7,830 bp
    • E Value
      0E0
    • BLAST Score
      3,973.3 bits
    • Similarity
      99.82%
    • Coverage
      19.23%
    • Alignment (schematic)

      SEQ ID NO 6
      19.23% cov
      AY428809
      27.64% cov
    • Alignment Length
      2,165 bp
  • Integrative promoter probe vector pTP2

    Integrative promoter probe vector pTP2

    • Public DB hit
      GI:117979214
      EF061140
    • Hit length
      10,142 bp
    • E Value
      0E0
    • BLAST Score
      3,402.6 bits
    • Similarity
      99.78%
    • Coverage
      16.48%
    • Alignment (schematic)

      SEQ ID NO 6
      16.48% cov
      EF061140
      18.29% cov
    • Alignment Length
      1,855 bp
  • Integrative promoter probe vector pPP2

    Integrative promoter probe vector pPP2

    • Public DB hit
      GI:117979208
      EF061139
    • Hit length
      10,180 bp
    • E Value
      0E0
    • BLAST Score
      3,402.6 bits
    • Similarity
      99.78%
    • Coverage
      16.48%
    • Alignment (schematic)

      SEQ ID NO 6
      16.48% cov
      EF061139
      18.22% cov
    • Alignment Length
      1,855 bp
  • Expression vector LIC-pDEST-LC2

    Expression vector LIC-pDEST-LC2

    • Public DB hit
      GI:332650943
      JF327847
    • Hit length
      6,349 bp
    • E Value
      0E0
    • BLAST Score
      3,400.8 bits
    • Similarity
      100%
    • Coverage
      16.38%
    • Alignment (schematic)

      SEQ ID NO 6
      16.38% cov
      JF327847
      29% cov
    • Alignment Length
      1,841 bp
  • Expression vector LIC-pDEST-LC1

    Expression vector LIC-pDEST-LC1

    • Public DB hit
      GI:332650941
      JF327846
    • Hit length
      6,366 bp
    • E Value
      0E0
    • BLAST Score
      3,400.8 bits
    • Similarity
      100%
    • Coverage
      16.38%
    • Alignment (schematic)

      SEQ ID NO 6
      16.38% cov
      JF327846
      28.92% cov
    • Alignment Length
      1,841 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
7
Length
9,652
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Shuttle vector pRHBR17
Determined organism
  • Shuttle vector pRHBR17

    Shuttle vector pRHBR17

    • Public DB hit
      GI:30313707
      AY180162
    • Hit length
      11,241 bp
    • E Value
      0E0
    • BLAST Score
      13,171.4 bits
    • Similarity
      100%
    • Coverage
      73.89%
    • Alignment (schematic)

      SEQ ID NO 7
      73.89% cov
      AY180162
      63.45% cov
    • Alignment Length
      7,132 bp
    • CIGAR string
      2520H7132M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628256
      AY178757
      1 of 2 hits reported for Rhodococcus erythropolis.
    • Hit length
      6,334 bp
    • E Value
      0E0
    • BLAST Score
      10,739.4 bits
    • Similarity
      100%
    • Coverage
      60.25%
    • Alignment (schematic)

      SEQ ID NO 7
      60.25% cov
      AY178757
      91.81% cov
    • Alignment Length
      5,815 bp
    • CIGAR string
      2520H5815M1317H mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:310763
      L08858
      1 of 5 hits reported for synthetic construct.
    • Hit length
      4,907 bp
    • E Value
      0E0
    • BLAST Score
      4,656.5 bits
    • Similarity
      100%
    • Coverage
      26.12%
    • Alignment (schematic)

      SEQ ID NO 7
      26.12% cov
      L08858
      51.38% cov
    • Alignment Length
      2,521 bp
  • unidentified cloning vector

    unidentified cloning vector

    • Public DB hit
      GI:208964
      J01753
      1 of 2 hits reported for unidentified cloning vector.
    • Hit length
      4,150 bp
    • E Value
      0E0
    • BLAST Score
      4,623.3 bits
    • Similarity
      99.84%
    • Coverage
      26.07%
    • Alignment (schematic)

      SEQ ID NO 7
      26.07% cov
      J01753
      60.6% cov
    • Alignment Length
      2,517 bp
  • Acetobacter pasteurianus

    Acetobacter pasteurianus

    • Public DB hit
      GI:71833817
      AM055747
    • Hit length
      4,484 bp
    • E Value
      0E0
    • BLAST Score
      4,255.8 bits
    • Similarity
      100%
    • Coverage
      23.87%
    • Alignment (schematic)

      SEQ ID NO 7
      23.87% cov
      AM055747
      51.38% cov
    • Alignment Length
      2,304 bp
  • Cloning vector svPHEP

    Cloning vector svPHEP

    • Public DB hit
      GI:310846
      L19900
    • Hit length
      9,201 bp
    • E Value
      0E0
    • BLAST Score
      3,958.5 bits
    • Similarity
      99.95%
    • Coverage
      22.23%
    • Alignment (schematic)

      SEQ ID NO 7
      22.23% cov
      L19900
      23.32% cov
    • Alignment Length
      2,146 bp
  • Cloning vector pTCF

    Cloning vector pTCF

    • Public DB hit
      GI:310738
      L19899
    • Hit length
      7,941 bp
    • E Value
      0E0
    • BLAST Score
      3,432.2 bits
    • Similarity
      99.73%
    • Coverage
      19.38%
    • Alignment (schematic)

      SEQ ID NO 7
      19.38% cov
      L19899
      23.61% cov
    • Alignment Length
      1,875 bp
  • Expression vector pEDMS1

    Expression vector pEDMS1

    • Public DB hit
      GI:329790867
      AB571797
    • Hit length
      7,909 bp
    • E Value
      0E0
    • BLAST Score
      2,846.8 bits
    • Similarity
      99.87%
    • Coverage
      16.03%
    • Alignment (schematic)

      SEQ ID NO 7
      16.03% cov
      AB571797
      19.56% cov
    • Alignment Length
      1,548 bp
  • Cloning vector pTip-istAB-sacB

    Cloning vector pTip-istAB-sacB

    • Public DB hit
      GI:293628573
      AB545980
    • Hit length
      12,453 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB545980
      15.43% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RT2

    Expression vector pNit-RT2

    • Public DB hit
      GI:51890504
      AB127605
    • Hit length
      6,062 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127605
      31.69% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RT1

    Expression vector pNit-RT1

    • Public DB hit
      GI:51890500
      AB127604
    • Hit length
      6,058 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127604
      31.71% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RC2

    Expression vector pNit-RC2

    • Public DB hit
      GI:51890496
      AB127603
    • Hit length
      6,231 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127603
      30.83% cov
    • Alignment Length
      1,927 bp
  • Expression vector pNit-RC1

    Expression vector pNit-RC1

    • Public DB hit
      GI:51890492
      AB127602
    • Hit length
      6,227 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127602
      30.85% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RT2

    Expression vector pTip-RT2

    • Public DB hit
      GI:51890466
      AB127597
    • Hit length
      8,279 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127597
      23.2% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RT1

    Expression vector pTip-RT1

    • Public DB hit
      GI:51890460
      AB127596
    • Hit length
      8,275 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127596
      23.21% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RC2

    Expression vector pTip-RC2

    • Public DB hit
      GI:51890454
      AB127595
    • Hit length
      8,456 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127595
      22.72% cov
    • Alignment Length
      1,927 bp
  • Expression vector pTip-RC1

    Expression vector pTip-RC1

    • Public DB hit
      GI:51890448
      AB127594
    • Hit length
      8,452 bp
    • E Value
      0E0
    • BLAST Score
      2,811.7 bits
    • Similarity
      93.1%
    • Coverage
      19.91%
    • Alignment (schematic)

      SEQ ID NO 7
      19.91% cov
      AB127594
      22.73% cov
    • Alignment Length
      1,927 bp
  • Expression plasmid pBAD-IEE

    Expression plasmid pBAD-IEE

    • Public DB hit
      GI:317414275
      AB598835
    • Hit length
      7,828 bp
    • E Value
      0E0
    • BLAST Score
      2,651.1 bits
    • Similarity
      99.93%
    • Coverage
      14.9%
    • Alignment (schematic)

      SEQ ID NO 7
      14.9% cov
      AB598835
      18.37% cov
    • Alignment Length
      1,438 bp
  • Cloning vector pAB34

    Cloning vector pAB34

    • Public DB hit
      GI:294847567
      GU952842
    • Hit length
      9,194 bp
    • E Value
      0E0
    • BLAST Score
      2,651.1 bits
    • Similarity
      99.93%
    • Coverage
      14.9%
    • Alignment (schematic)

      SEQ ID NO 7
      14.9% cov
      GU952842
      15.64% cov
    • Alignment Length
      1,438 bp
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
8
Length
29
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Rhodococcus AN12
Determined organism
  • Shuttle vector pRHBR17

    Shuttle vector pRHBR17

    • Public DB hit
      GI:30313707
      AY180162
    • Hit length
      11,241 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY180162
      0.26% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
  • Rhodococcus erythropolis

    Rhodococcus erythropolis

    • Public DB hit
      GI:28628256
      AY178757
    • Hit length
      6,334 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY178757
      0.46% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
9
Length
19
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial Probe
Determined organism
  • Mycoplasma capricolum subsp. capripneumoniae

    Mycoplasma capricolum subsp. capripneumoniae

    • Public DB hit
      GI:310975197
      NR_037061
    • Hit length
      1,522 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_037061
      1.25% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Staphylococcus aureus subsp. aureus

    Staphylococcus aureus subsp. aureus

    • Public DB hit
      GI:310975143
      NR_037007
    • Hit length
      1,555 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_037007
      1.22% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Bradyrhizobium japonicum

    Bradyrhizobium japonicum

    • Public DB hit
      GI:310975001
      NR_036865
    • Hit length
      1,481 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_036865
      1.28% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Caryophanon latum

    Caryophanon latum

    • Public DB hit
      GI:310974986
      NR_036850
    • Hit length
      1,489 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_036850
      1.28% cov
    • Alignment Length
      19 bp
  • Spiroplasma citri

    Spiroplasma citri

    • Public DB hit
      GI:310974985
      NR_036849
    • Hit length
      1,530 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_036849
      1.24% cov
    • Alignment Length
      19 bp
  • Clostridium botulinum

    Clostridium botulinum

    • Public DB hit
      GI:310974922
      NR_036786
    • Hit length
      1,507 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_036786
      1.26% cov
    • Alignment Length
      19 bp
  • Agrobacterium vitis

    Agrobacterium vitis

    • Public DB hit
      GI:310974916
      NR_036780
    • Hit length
      1,480 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_036780
      1.28% cov
    • Alignment Length
      19 bp
  • Rhodothermus marinus

    Rhodothermus marinus

    • Public DB hit
      GI:265678974
      NR_029282
    • Hit length
      1,543 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029282
      1.23% cov
    • Alignment Length
      19 bp
  • Sanguibacter inulinus

    Sanguibacter inulinus

    • Public DB hit
      GI:265678969
      NR_029277
    • Hit length
      1,477 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029277
      1.29% cov
    • Alignment Length
      19 bp
  • [Clostridium] rectum

    [Clostridium] rectum

    • Public DB hit
      GI:265678963
      NR_029271
    • Hit length
      1,505 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029271
      1.26% cov
    • Alignment Length
      19 bp
  • [Clostridium] litorale

    [Clostridium] litorale

    • Public DB hit
      GI:265678962
      NR_029270
    • Hit length
      1,501 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029270
      1.27% cov
    • Alignment Length
      19 bp
  • Oxobacter pfennigii

    Oxobacter pfennigii

    • Public DB hit
      GI:265678960
      NR_029268
    • Hit length
      1,490 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029268
      1.28% cov
    • Alignment Length
      19 bp
  • Clostridium tetani

    Clostridium tetani

    • Public DB hit
      GI:265678952
      NR_029260
    • Hit length
      1,508 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029260
      1.26% cov
    • Alignment Length
      19 bp
  • Clostridium proteolyticum

    Clostridium proteolyticum

    • Public DB hit
      GI:265678942
      NR_029250
    • Hit length
      1,500 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029250
      1.27% cov
    • Alignment Length
      19 bp
  • Asaccharospora irregularis

    Asaccharospora irregularis

    • Public DB hit
      GI:265678941
      NR_029249
    • Hit length
      1,489 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029249
      1.28% cov
    • Alignment Length
      19 bp
  • Erysipelatoclostridium ramosum

    Erysipelatoclostridium ramosum

    • Public DB hit
      GI:265678939
      NR_029247
    • Hit length
      1,519 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029247
      1.25% cov
    • Alignment Length
      19 bp
  • Clostridium collagenovorans

    Clostridium collagenovorans

    • Public DB hit
      GI:265678938
      NR_029246
    • Hit length
      1,500 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029246
      1.27% cov
    • Alignment Length
      19 bp
  • Clostridium argentinense

    Clostridium argentinense

    • Public DB hit
      GI:265678924
      NR_029232
    • Hit length
      1,504 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029232
      1.26% cov
    • Alignment Length
      19 bp
  • Clostridium sporogenes

    Clostridium sporogenes

    • Public DB hit
      GI:265678923
      NR_029231
    • Hit length
      1,503 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029231
      1.26% cov
    • Alignment Length
      19 bp
  • Clostridium beijerinckii

    Clostridium beijerinckii

    • Public DB hit
      GI:265678922
      NR_029230
    • Hit length
      1,503 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029230
      1.26% cov
    • Alignment Length
      19 bp
  • Clostridium baratii

    Clostridium baratii

    • Public DB hit
      GI:265678921
      NR_029229
    • Hit length
      1,508 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029229
      1.26% cov
    • Alignment Length
      19 bp
  • Propionigenium modestum

    Propionigenium modestum

    • Public DB hit
      GI:265678908
      NR_029216
    • Hit length
      1,515 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029216
      1.25% cov
    • Alignment Length
      19 bp
  • Rhodobacter sphaeroides

    Rhodobacter sphaeroides

    • Public DB hit
      GI:265678907
      NR_029215
    • Hit length
      1,466 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029215
      1.3% cov
    • Alignment Length
      19 bp
  • Amaricoccus kaplicensis

    Amaricoccus kaplicensis

    • Public DB hit
      GI:265678893
      NR_029201
    • Hit length
      1,425 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029201
      1.33% cov
    • Alignment Length
      19 bp
  • Simkania negevensis

    Simkania negevensis

    • Public DB hit
      GI:265678886
      NR_029194
    • Hit length
      1,545 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NR_029194
      1.23% cov
    • Alignment Length
      19 bp
Occurrence
421 times in PatSeqDB
Tools
SEQ ID NO
10
Length
16
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial Probe
Determined organism
Occurrence
201 times in PatSeqDB
Tools

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