Sialic Acid Permease System

  • Published: Aug 19, 2008
  • Earliest Priority: Jan 13 2005
  • Family: 4
  • Cited Works: 56
  • Cited by: 1
  • Cites: 6
  • Sequences: 12
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext
12 sequences found in this patent (in total)

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Displaying 1 - 10 of 12 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
633
Sequence Type
peptide
Locations
Detailed Description, Drawings, Summary
Declared organism
Haemophilus influenzae
Determined organism
  • Haemophilus influenzae Rd KW20

    Haemophilus influenzae Rd KW20

    • Public DB hit
      GI:16272114
      NP_438316
    • Hit length
      633 aa
    • E Value
      0E0
    • BLAST Score
      1,260 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_438316
      100% cov
    • Alignment Length
      633 aa
    • CIGAR string
      633M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae PittGG

    Haemophilus influenzae PittGG

    • Public DB hit
      GI:148827288
      YP_001292041
      1 of 2 hits reported for Haemophilus influenzae PittGG.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,220.3 bits
    • Similarity
      100%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      YP_001292041
      100% cov
    • Alignment Length
      616 aa
    • CIGAR string
      17H130MN485M mismatches: 1 - insertions: 0 - deletions: 0
  • Haemophilus influenzae RdAW

    Haemophilus influenzae RdAW

    • Public DB hit
      GI:260581308
      ZP_05849125
      1 of 2 hits reported for Haemophilus influenzae RdAW.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,220.3 bits
    • Similarity
      100%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_05849125
      100% cov
    • Alignment Length
      616 aa
    • CIGAR string
      17H616M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae F3031

    Haemophilus influenzae F3031

    • Public DB hit
      GI:319898115
      YP_004136312
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,219.5 bits
    • Similarity
      100%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      YP_004136312
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae R2866

    Haemophilus influenzae R2866

    • Public DB hit
      GI:309750435
      ADO80419
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,218.8 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ADO80419
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae 10810

    Haemophilus influenzae 10810

    • Public DB hit
      GI:301168800
      CBW28391
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,217.6 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      CBW28391
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae PittAA

    Haemophilus influenzae PittAA

    • Public DB hit
      GI:145635306
      ZP_01791009
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,217.2 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_01791009
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae PittII

    Haemophilus influenzae PittII

    • Public DB hit
      GI:145639797
      ZP_01795399
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,216.8 bits
    • Similarity
      99.68%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_01795399
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae F3047

    Haemophilus influenzae F3047

    • Public DB hit
      GI:319775981
      YP_004138469
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,216.1 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      YP_004138469
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae 22.1-21

    Haemophilus influenzae 22.1-21

    • Public DB hit
      GI:145628444
      ZP_01784244
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,215.7 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_01784244
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus aegyptius ATCC 11116

    Haemophilus aegyptius ATCC 11116

    • Public DB hit
      GI:329123846
      ZP_08252404
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,214.5 bits
    • Similarity
      99.68%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_08252404
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae PittHH

    Haemophilus influenzae PittHH

    • Public DB hit
      GI:145637883
      ZP_01793528
      1 of 2 hits reported for Haemophilus influenzae PittHH.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,214.1 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_01793528
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae R3021

    Haemophilus influenzae R3021

    • Public DB hit
      GI:145631621
      ZP_01787386
      1 of 2 hits reported for Haemophilus influenzae R3021.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,214.1 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_01787386
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae 3655

    Haemophilus influenzae 3655

    • Public DB hit
      GI:145633574
      ZP_01789302
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,213 bits
    • Similarity
      99.84%
    • Coverage
      97.31%
    • Alignment (schematic)

      SEQ ID NO 1
      97.31% cov
      ZP_01789302
      100% cov
    • Alignment Length
      616 aa
Occurrence
27 times in PatSeqDB
Tools
SEQ ID NO
2
Length
1,902
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Haemophilus influenzae
Determined organism
  • Haemophilus influenzae Rd KW20

    Haemophilus influenzae Rd KW20

    • Public DB hit
      GI:6626252
      L42023
    • Hit length
      1,830,138 bp
    • E Value
      0E0
    • BLAST Score
      3,513.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      L42023
      0.1% cov
    • Alignment Length
      1,902 bp
    • CIGAR string
      1902M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae PittGG

    Haemophilus influenzae PittGG

    • Public DB hit
      GI:148717999
      CP000672
    • Hit length
      1,887,192 bp
    • E Value
      0E0
    • BLAST Score
      3,465.4 bits
    • Similarity
      99.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP000672
      0.1% cov
    • Alignment Length
      1,905 bp
    • CIGAR string
      15MIMI32MI393MN55MN365MN329MN278MN114MN314M mismatches: 6 - insertions: 3 - deletions: 0
  • Haemophilus influenzae 10810

    Haemophilus influenzae 10810

    • Public DB hit
      GI:301168602
      FQ312006
    • Hit length
      1,981,535 bp
    • E Value
      0E0
    • BLAST Score
      3,443.3 bits
    • Similarity
      99.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FQ312006
      0.1% cov
    • Alignment Length
      1,906 bp
    • CIGAR string
      15MIMI32MI257MDMI142MN33MN34MN50MN782MN119MN26MN87MN314M mismatches: 8 - insertions: 4 - deletions: 1
  • Haemophilus influenzae F3047

    Haemophilus influenzae F3047

    • Public DB hit
      GI:317449542
      FQ670204
    • Hit length
      2,007,018 bp
    • E Value
      0E0
    • BLAST Score
      3,437.7 bits
    • Similarity
      99.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FQ670204
      0.09% cov
    • Alignment Length
      1,905 bp
  • Haemophilus influenzae F3031

    Haemophilus influenzae F3031

    • Public DB hit
      GI:317431924
      FQ670178
    • Hit length
      1,985,832 bp
    • E Value
      0E0
    • BLAST Score
      3,432.2 bits
    • Similarity
      99.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FQ670178
      0.1% cov
    • Alignment Length
      1,905 bp
  • Haemophilus influenzae R2866

    Haemophilus influenzae R2866

    • Public DB hit
      GI:309750011
      CP002277
    • Hit length
      1,932,306 bp
    • E Value
      0E0
    • BLAST Score
      3,421.1 bits
    • Similarity
      99.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002277
      0.1% cov
    • Alignment Length
      1,907 bp
  • Haemophilus influenzae PittEE

    Haemophilus influenzae PittEE

    • Public DB hit
      GI:148715293
      CP000671
    • Hit length
      1,813,033 bp
    • E Value
      0E0
    • BLAST Score
      3,310.3 bits
    • Similarity
      98.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP000671
      0.11% cov
    • Alignment Length
      1,905 bp
  • Haemophilus influenzae R2846

    Haemophilus influenzae R2846

    • Public DB hit
      GI:309972265
      CP002276
    • Hit length
      1,819,370 bp
    • E Value
      0E0
    • BLAST Score
      3,299.2 bits
    • Similarity
      97.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002276
      0.1% cov
    • Alignment Length
      1,906 bp
  • Haemophilus influenzae

    Haemophilus influenzae

    • Public DB hit
      GI:66876718
      DQ054469
      1 of 2 hits reported for Haemophilus influenzae.
    • Hit length
      1,851 bp
    • E Value
      0E0
    • BLAST Score
      3,197.7 bits
    • Similarity
      97.84%
    • Coverage
      97.32%
    • Alignment (schematic)

      SEQ ID NO 2
      97.32% cov
      DQ054469
      100% cov
    • Alignment Length
      1,854 bp
  • Haemophilus influenzae 2019

    Haemophilus influenzae 2019

    • Public DB hit
      GI:66876722
      DQ054471
    • Hit length
      1,851 bp
    • E Value
      0E0
    • BLAST Score
      3,182.9 bits
    • Similarity
      97.68%
    • Coverage
      97.32%
    • Alignment (schematic)

      SEQ ID NO 2
      97.32% cov
      DQ054471
      100% cov
    • Alignment Length
      1,854 bp
  • Haemophilus influenzae 86-028NP

    Haemophilus influenzae 86-028NP

    • Public DB hit
      GI:156617157
      CP000057
    • Hit length
      1,914,490 bp
    • E Value
      0E0
    • BLAST Score
      3,105.3 bits
    • Similarity
      96.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP000057
      0.1% cov
    • Alignment Length
      1,907 bp
Occurrence
21 times in PatSeqDB
Tools
SEQ ID NO
3
Length
34
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
4
Length
33
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
5
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Haemophilus influenzae F3047

    Haemophilus influenzae F3047

    • Public DB hit
      GI:317449542
      FQ670204
    • Hit length
      2,007,018 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FQ670204
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae F3031

    Haemophilus influenzae F3031

    • Public DB hit
      GI:317431924
      FQ670178
    • Hit length
      1,985,832 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FQ670178
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae R2866

    Haemophilus influenzae R2866

    • Public DB hit
      GI:309750011
      CP002277
    • Hit length
      1,932,306 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP002277
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae 10810

    Haemophilus influenzae 10810

    • Public DB hit
      GI:301168602
      FQ312006
    • Hit length
      1,981,535 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FQ312006
      0% cov
    • Alignment Length
      20 bp
  • Haemophilus influenzae 86-028NP

    Haemophilus influenzae 86-028NP

    • Public DB hit
      GI:156617157
      CP000057
    • Hit length
      1,914,490 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000057
      0% cov
    • Alignment Length
      20 bp
  • Haemophilus influenzae PittGG

    Haemophilus influenzae PittGG

    • Public DB hit
      GI:148717999
      CP000672
    • Hit length
      1,887,192 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000672
      0% cov
    • Alignment Length
      20 bp
  • Haemophilus influenzae PittEE

    Haemophilus influenzae PittEE

    • Public DB hit
      GI:148715293
      CP000671
    • Hit length
      1,813,033 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP000671
      0% cov
    • Alignment Length
      20 bp
  • Haemophilus influenzae Rd KW20

    Haemophilus influenzae Rd KW20

    • Public DB hit
      GI:6626252
      L42023
    • Hit length
      1,830,138 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      L42023
      0% cov
    • Alignment Length
      20 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
6
Length
26
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Haemophilus influenzae F3047

    Haemophilus influenzae F3047

    • Public DB hit
      GI:317449542
      FQ670204
    • Hit length
      2,007,018 bp
    • E Value
      6.17E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FQ670204
      0% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae F3031

    Haemophilus influenzae F3031

    • Public DB hit
      GI:317431924
      FQ670178
    • Hit length
      1,985,832 bp
    • E Value
      6.17E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FQ670178
      0% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae R2866

    Haemophilus influenzae R2866

    • Public DB hit
      GI:309750011
      CP002277
    • Hit length
      1,932,306 bp
    • E Value
      6.17E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002277
      0% cov
    • Alignment Length
      26 bp
    • CIGAR string
      26M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae 10810

    Haemophilus influenzae 10810

    • Public DB hit
      GI:301168602
      FQ312006
    • Hit length
      1,981,535 bp
    • E Value
      6.17E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FQ312006
      0% cov
    • Alignment Length
      26 bp
  • Haemophilus influenzae PittGG

    Haemophilus influenzae PittGG

    • Public DB hit
      GI:148717999
      CP000672
    • Hit length
      1,887,192 bp
    • E Value
      6.17E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP000672
      0% cov
    • Alignment Length
      26 bp
  • Haemophilus influenzae Rd KW20

    Haemophilus influenzae Rd KW20

    • Public DB hit
      GI:6626252
      L42023
    • Hit length
      1,830,138 bp
    • E Value
      6.17E-5
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      L42023
      0% cov
    • Alignment Length
      26 bp
  • Haemophilus influenzae 86-028NP

    Haemophilus influenzae 86-028NP

    • Public DB hit
      GI:156617157
      CP000057
    • Hit length
      1,914,490 bp
    • E Value
      9.63E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      92.31%
    • Alignment (schematic)

      SEQ ID NO 6
      92.31% cov
      CP000057
      0% cov
    • Alignment Length
      24 bp
  • Haemophilus influenzae R2846

    Haemophilus influenzae R2846

    • Public DB hit
      GI:309972265
      CP002276
    • Hit length
      1,819,370 bp
    • E Value
      1.5E-2
    • BLAST Score
      44.1 bits
    • Similarity
      96.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002276
      0% cov
    • Alignment Length
      26 bp
  • Haemophilus influenzae PittEE

    Haemophilus influenzae PittEE

    • Public DB hit
      GI:148715293
      CP000671
    • Hit length
      1,813,033 bp
    • E Value
      1.5E-2
    • BLAST Score
      44.1 bits
    • Similarity
      96.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP000671
      0% cov
    • Alignment Length
      26 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
7
Length
34
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Reporter vector pGUSA

    Reporter vector pGUSA

    • Public DB hit
      GI:33520706
      AY292368
    • Hit length
      6,709 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY292368
      0.51% cov
    • Alignment Length
      34 bp
    • CIGAR string
      34M mismatches: 0 - insertions: 0 - deletions: 0
  • Staphylococcus haemolyticus JCSC1435

    Staphylococcus haemolyticus JCSC1435

    • Public DB hit
      GI:68448408
      AP006718
    • Hit length
      2,366 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AP006718
      1.44% cov
    • Alignment Length
      34 bp
    • CIGAR string
      34M mismatches: 0 - insertions: 0 - deletions: 0
  • Staphylococcus aureus subsp. aureus USA300_FPR3757

    Staphylococcus aureus subsp. aureus USA300_FPR3757

    • Public DB hit
      GI:87125821
      CP000258
    • Hit length
      37,136 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000258
      0.09% cov
    • Alignment Length
      34 bp
    • CIGAR string
      34M mismatches: 0 - insertions: 0 - deletions: 0
  • Neisseria meningitidis MC58

    Neisseria meningitidis MC58

    • Public DB hit
      GI:66731897
      AE002098
    • Hit length
      2,272,360 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AE002098
      0% cov
    • Alignment Length
      34 bp
  • Shuttle vector pSOS95

    Shuttle vector pSOS95

    • Public DB hit
      GI:28412270
      AY187686
    • Hit length
      6,995 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY187686
      0.49% cov
    • Alignment Length
      34 bp
  • Shuttle vector pSOS94

    Shuttle vector pSOS94

    • Public DB hit
      GI:28412263
      AY187685
    • Hit length
      7,000 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY187685
      0.49% cov
    • Alignment Length
      34 bp
  • Shuttle vector pSOS96

    Shuttle vector pSOS96

    • Public DB hit
      GI:28412256
      AY187684
    • Hit length
      7,076 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY187684
      0.48% cov
    • Alignment Length
      34 bp
  • Cloning vector pIDN4

    Cloning vector pIDN4

    • Public DB hit
      GI:14324126
      AY034154
    • Hit length
      2,059 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY034154
      1.65% cov
    • Alignment Length
      34 bp
  • Integrative vector pNLE1

    Integrative vector pNLE1

    • Public DB hit
      GI:8927566
      AF276982
    • Hit length
      5,027 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF276982
      0.68% cov
    • Alignment Length
      34 bp
  • Staphylococcus haemolyticus

    Staphylococcus haemolyticus

    • Public DB hit
      GI:2326850
      Y09002
      1 of 2 hits reported for Staphylococcus haemolyticus.
    • Hit length
      834 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      Y09002
      4.08% cov
    • Alignment Length
      34 bp
  • Staphylococcus epidermidis

    Staphylococcus epidermidis

    • Public DB hit
      GI:150829
      M12730
    • Hit length
      2,355 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      M12730
      1.44% cov
    • Alignment Length
      34 bp
  • Bacillus subtilis

    Bacillus subtilis

    • Public DB hit
      GI:149050
      M13761
    • Hit length
      2,246 bp
    • E Value
      2.08E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      M13761
      1.51% cov
    • Alignment Length
      34 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
8
Length
35
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Staphylococcus aureus

    Staphylococcus aureus

    • Public DB hit
      GI:304389162
      CP002148
      1 of 9 hits reported for Staphylococcus aureus.
    • Hit length
      2,473 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP002148
      1.42% cov
    • Alignment Length
      35 bp
    • CIGAR string
      35M mismatches: 0 - insertions: 0 - deletions: 0
  • Reporter vector pGUSA

    Reporter vector pGUSA

    • Public DB hit
      GI:33520706
      AY292368
    • Hit length
      6,709 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY292368
      0.52% cov
    • Alignment Length
      35 bp
  • Staphylococcus haemolyticus JCSC1435

    Staphylococcus haemolyticus JCSC1435

    • Public DB hit
      GI:68448408
      AP006718
    • Hit length
      2,366 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AP006718
      1.48% cov
    • Alignment Length
      35 bp
  • Staphylococcus aureus subsp. aureus USA300_FPR3757

    Staphylococcus aureus subsp. aureus USA300_FPR3757

    • Public DB hit
      GI:87125821
      CP000258
    • Hit length
      37,136 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP000258
      0.09% cov
    • Alignment Length
      35 bp
  • Staphylococcus lentus

    Staphylococcus lentus

    • Public DB hit
      GI:60416743
      AJ888003
    • Hit length
      6,913 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AJ888003
      0.51% cov
    • Alignment Length
      35 bp
  • Neisseria meningitidis MC58

    Neisseria meningitidis MC58

    • Public DB hit
      GI:66731897
      AE002098
    • Hit length
      2,272,360 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AE002098
      0% cov
    • Alignment Length
      35 bp
  • Shuttle vector pSOS95

    Shuttle vector pSOS95

    • Public DB hit
      GI:28412270
      AY187686
    • Hit length
      6,995 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY187686
      0.5% cov
    • Alignment Length
      35 bp
  • Shuttle vector pSOS94

    Shuttle vector pSOS94

    • Public DB hit
      GI:28412263
      AY187685
    • Hit length
      7,000 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY187685
      0.5% cov
    • Alignment Length
      35 bp
  • Shuttle vector pSOS96

    Shuttle vector pSOS96

    • Public DB hit
      GI:28412256
      AY187684
    • Hit length
      7,076 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY187684
      0.49% cov
    • Alignment Length
      35 bp
  • Cloning vector pIDN4

    Cloning vector pIDN4

    • Public DB hit
      GI:14324126
      AY034154
    • Hit length
      2,059 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY034154
      1.7% cov
    • Alignment Length
      35 bp
  • Staphylococcus simulans

    Staphylococcus simulans

    • Public DB hit
      GI:2407670
      AF019140
    • Hit length
      2,526 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF019140
      1.39% cov
    • Alignment Length
      35 bp
  • Staphylococcus chromogenes

    Staphylococcus chromogenes

    • Public DB hit
      GI:2317795
      U82607
    • Hit length
      2,410 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      U82607
      1.45% cov
    • Alignment Length
      35 bp
  • Plasmid pE5

    Plasmid pE5

    • Public DB hit
      GI:153063
      M17990
    • Hit length
      2,473 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      M17990
      1.42% cov
    • Alignment Length
      35 bp
  • Bacillus subtilis

    Bacillus subtilis

    • Public DB hit
      GI:149050
      M13761
    • Hit length
      2,246 bp
    • E Value
      5.63E-10
    • BLAST Score
      69.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      M13761
      1.56% cov
    • Alignment Length
      35 bp
  • Staphylococcus epidermidis

    Staphylococcus epidermidis

    • Public DB hit
      GI:150829
      M12730
    • Hit length
      2,355 bp
    • E Value
      2.22E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      97.14%
    • Alignment (schematic)

      SEQ ID NO 8
      97.14% cov
      M12730
      1.44% cov
    • Alignment Length
      34 bp
  • Cloning vector pHC10

    Cloning vector pHC10

    • Public DB hit
      GI:228484730
      FJ389164
    • Hit length
      8,837 bp
    • E Value
      1.37E-7
    • BLAST Score
      61.9 bits
    • Similarity
      97.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      FJ389164
      0.4% cov
    • Alignment Length
      35 bp
  • Cloning vector pHC09

    Cloning vector pHC09

    • Public DB hit
      GI:228484725
      FJ389163
    • Hit length
      9,548 bp
    • E Value
      1.37E-7
    • BLAST Score
      61.9 bits
    • Similarity
      97.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      FJ389163
      0.37% cov
    • Alignment Length
      35 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
9
Length
1,851
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Haemophilus influenzae
Determined organism
  • Haemophilus influenzae 2019

    Haemophilus influenzae 2019

    • Public DB hit
      GI:66876722
      DQ054471
    • Hit length
      1,851 bp
    • E Value
      0E0
    • BLAST Score
      3,415.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      DQ054471
      100% cov
    • Alignment Length
      1,851 bp
    • CIGAR string
      1851M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae

    Haemophilus influenzae

    • Public DB hit
      GI:66876718
      DQ054469
      1 of 2 hits reported for Haemophilus influenzae.
    • Hit length
      1,851 bp
    • E Value
      0E0
    • BLAST Score
      3,393.4 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      DQ054469
      100% cov
    • Alignment Length
      1,851 bp
    • CIGAR string
      84MN277MN425MN20MN359MN681M mismatches: 5 - insertions: 0 - deletions: 0
  • Haemophilus influenzae R2866

    Haemophilus influenzae R2866

    • Public DB hit
      GI:309750011
      CP002277
    • Hit length
      1,932,306 bp
    • E Value
      0E0
    • BLAST Score
      3,205.1 bits
    • Similarity
      97.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP002277
      0.1% cov
    • Alignment Length
      1,853 bp
  • Haemophilus influenzae F3047

    Haemophilus influenzae F3047

    • Public DB hit
      GI:317449542
      FQ670204
    • Hit length
      2,007,018 bp
    • E Value
      0E0
    • BLAST Score
      3,182.9 bits
    • Similarity
      97.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FQ670204
      0.09% cov
    • Alignment Length
      1,854 bp
  • Haemophilus influenzae F3031

    Haemophilus influenzae F3031

    • Public DB hit
      GI:317431924
      FQ670178
    • Hit length
      1,985,832 bp
    • E Value
      0E0
    • BLAST Score
      3,182.9 bits
    • Similarity
      97.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FQ670178
      0.09% cov
    • Alignment Length
      1,855 bp
  • Haemophilus influenzae Rd KW20

    Haemophilus influenzae Rd KW20

    • Public DB hit
      GI:6626252
      L42023
    • Hit length
      1,830,138 bp
    • E Value
      0E0
    • BLAST Score
      3,182.9 bits
    • Similarity
      97.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      L42023
      0.1% cov
    • Alignment Length
      1,854 bp
  • Haemophilus influenzae 10810

    Haemophilus influenzae 10810

    • Public DB hit
      GI:301168602
      FQ312006
    • Hit length
      1,981,535 bp
    • E Value
      0E0
    • BLAST Score
      3,160.7 bits
    • Similarity
      97.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FQ312006
      0.09% cov
    • Alignment Length
      1,853 bp
  • Haemophilus influenzae PittGG

    Haemophilus influenzae PittGG

    • Public DB hit
      GI:148717999
      CP000672
    • Hit length
      1,887,192 bp
    • E Value
      0E0
    • BLAST Score
      3,160.7 bits
    • Similarity
      97.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000672
      0.1% cov
    • Alignment Length
      1,855 bp
  • Haemophilus influenzae R2846

    Haemophilus influenzae R2846

    • Public DB hit
      GI:309972265
      CP002276
    • Hit length
      1,819,370 bp
    • E Value
      0E0
    • BLAST Score
      3,144.1 bits
    • Similarity
      97.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP002276
      0.1% cov
    • Alignment Length
      1,853 bp
  • Haemophilus influenzae PittEE

    Haemophilus influenzae PittEE

    • Public DB hit
      GI:148715293
      CP000671
    • Hit length
      1,813,033 bp
    • E Value
      0E0
    • BLAST Score
      3,127.5 bits
    • Similarity
      97.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000671
      0.1% cov
    • Alignment Length
      1,855 bp
  • Haemophilus influenzae 86-028NP

    Haemophilus influenzae 86-028NP

    • Public DB hit
      GI:156617157
      CP000057
    • Hit length
      1,914,490 bp
    • E Value
      0E0
    • BLAST Score
      3,099.8 bits
    • Similarity
      96.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000057
      0.1% cov
    • Alignment Length
      1,853 bp
  • Pasteurella multocida subsp. multocida str. Pm70

    Pasteurella multocida subsp. multocida str. Pm70

    • Public DB hit
      GI:13400023
      AE004439
    • Hit length
      2,257,487 bp
    • E Value
      0E0
    • BLAST Score
      660.4 bits
    • Similarity
      76.05%
    • Coverage
      73.85%
    • Alignment (schematic)

      SEQ ID NO 9
      73.85% cov
      AE004439
      0.06% cov
    • Alignment Length
      1,407 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
10
Length
616
Sequence Type
peptide
Locations
Detailed Description, Drawings, Summary
Declared organism
Haemophilus influenzae
Determined organism
  • Haemophilus influenzae 2019

    Haemophilus influenzae 2019

    • Public DB hit
      GI:66876723
      AAY58080
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,223 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAY58080
      100% cov
    • Alignment Length
      616 aa
    • CIGAR string
      616M mismatches: 0 - insertions: 0 - deletions: 0
  • Haemophilus influenzae 6P18H1

    Haemophilus influenzae 6P18H1

    • Public DB hit
      GI:229845449
      ZP_04465579
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,221.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_04465579
      100% cov
    • Alignment Length
      616 aa
    • CIGAR string
      444MN171M mismatches: 1 - insertions: 0 - deletions: 0
  • Haemophilus influenzae

    Haemophilus influenzae

    • Public DB hit
      GI:81340646
      Q4TVS0
      1 of 2 hits reported for Haemophilus influenzae.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,221.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      Q4TVS0
      100% cov
    • Alignment Length
      616 aa
    • CIGAR string
      28MN587M mismatches: 1 - insertions: 0 - deletions: 0
  • Haemophilus influenzae 22.1-21

    Haemophilus influenzae 22.1-21

    • Public DB hit
      GI:145628444
      ZP_01784244
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,218.4 bits
    • Similarity
      99.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_01784244
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae R2866

    Haemophilus influenzae R2866

    • Public DB hit
      GI:309750435
      ADO80419
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,215.3 bits
    • Similarity
      99.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ADO80419
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae 10810

    Haemophilus influenzae 10810

    • Public DB hit
      GI:301168800
      CBW28391
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,214.5 bits
    • Similarity
      99.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CBW28391
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae PittAA

    Haemophilus influenzae PittAA

    • Public DB hit
      GI:145635306
      ZP_01791009
      1 of 2 hits reported for Haemophilus influenzae PittAA.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,214.1 bits
    • Similarity
      99.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_01791009
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae RdAW

    Haemophilus influenzae RdAW

    • Public DB hit
      GI:260581308
      ZP_05849125
      1 of 2 hits reported for Haemophilus influenzae RdAW.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,214.1 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_05849125
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae PittGG

    Haemophilus influenzae PittGG

    • Public DB hit
      GI:148827288
      YP_001292041
      1 of 2 hits reported for Haemophilus influenzae PittGG.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,213.7 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_001292041
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae PittII

    Haemophilus influenzae PittII

    • Public DB hit
      GI:145639797
      ZP_01795399
      1 of 2 hits reported for Haemophilus influenzae PittII.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,213.7 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_01795399
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae F3047

    Haemophilus influenzae F3047

    • Public DB hit
      GI:319775981
      YP_004138469
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,213.4 bits
    • Similarity
      99.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_004138469
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae R3021

    Haemophilus influenzae R3021

    • Public DB hit
      GI:145631621
      ZP_01787386
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,212.6 bits
    • Similarity
      99.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_01787386
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae F3031

    Haemophilus influenzae F3031

    • Public DB hit
      GI:319898115
      YP_004136312
      1 of 2 hits reported for Haemophilus influenzae F3031.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,212.2 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      YP_004136312
      100% cov
    • Alignment Length
      616 aa
  • Haemophilus influenzae 3655

    Haemophilus influenzae 3655

    • Public DB hit
      GI:145633574
      ZP_01789302
      1 of 2 hits reported for Haemophilus influenzae 3655.
    • Hit length
      616 aa
    • E Value
      0E0
    • BLAST Score
      1,212.2 bits
    • Similarity
      99.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_01789302
      100% cov
    • Alignment Length
      616 aa
Occurrence
3 times in PatSeqDB
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