Human Neuronal Nicotinic Acetylcholine Receptor Compositions And Methods Employing Same

Data obtained from: USPTO Fulltext EMBL-EBI Pat DDBJ Pat NCBI GenBank
20 sequences found in this patent (in total)

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Displaying 1 - 10 of 20 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
2,664
Sequence Type
nucleotide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1458109
      U62431
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      2,664 bp
    • E Value
      0E0
    • BLAST Score
      4,920.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      U62431
      100% cov
    • Alignment Length
      2,664 bp
    • CIGAR string
      2664M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682551
      XM_002818935
    • Hit length
      2,391 bp
    • E Value
      0E0
    • BLAST Score
      3,055.5 bits
    • Similarity
      97.96%
    • Coverage
      66.14%
    • Alignment (schematic)

      SEQ ID NO 1
      66.14% cov
      XM_002818935
      73.69% cov
    • Alignment Length
      1,763 bp
    • CIGAR string
      413H4MN3MN40MN84MN13MN31MN62MN19MN2MN41MN3MN55MN35MN173MN218MN13MN15MN50MN29MN8MN14MN152MN68MN76MN67MN14MI4MD51MN16MN95MN50MN21MN38MN29MN121MN7MN6M489H mismatches: 34 - insertions: 1 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332247608
      XM_003272904
    • Hit length
      2,242 bp
    • E Value
      0E0
    • BLAST Score
      3,003.8 bits
    • Similarity
      97.24%
    • Coverage
      66.55%
    • Alignment (schematic)

      SEQ ID NO 1
      66.55% cov
      XM_003272904
      79.08% cov
    • Alignment Length
      1,773 bp
    • CIGAR string
      402H6MN12MN31MN8MN36MN78MN4MN141MN55MN26MN8MN107MN56MN8MN218MN47MN29MN32MN80MN44MN50MN92MN41MN8MNMN67MN12MN5MN18MN20MN2MN8MN5MN49M2N38MN30MN2MN33MN21MN14MN23MN20MN8MN14MN68MN3MN29MN3MN14M489H mismatches: 49 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297299132
      XM_001109335
    • Hit length
      2,127 bp
    • E Value
      0E0
    • BLAST Score
      2,693.5 bits
    • Similarity
      96.01%
    • Coverage
      62.16%
    • Alignment (schematic)

      SEQ ID NO 1
      62.16% cov
      XM_001109335
      77.86% cov
    • Alignment Length
      1,656 bp
    • CIGAR string
      519H28MN18MN6MN24MN41MN32MN23MN14MN2MN6MN2MN91MN26MN83MN5MN5MN12MN37MN164MN53MN29MN11MN38MN5MN14MN2MN14MN17MN17MN14MN20MN23MN29MN14MN26MN74MN70MN59M2N3MN2MN18MNMN7MN17MN10MN4MN49MN11MN6MN40MN2MN24MN25MN7MN21MN2MN26MN8MN29MN2MN11MN68MN3MN30MN2MN14M489H mismatches: 66 - insertions: 0 - deletions: 0
Occurrence
45 times in PatSeqDB
Tools
SEQ ID NO
2
Length
529
Sequence Type
peptide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1458110
      AAB40109
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      529 aa
    • E Value
      0E0
    • BLAST Score
      1,088.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAB40109
      100% cov
    • Alignment Length
      529 aa
    • CIGAR string
      529M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:76677947
      NP_001029107
    • Hit length
      529 aa
    • E Value
      0E0
    • BLAST Score
      1,082.4 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001029107
      100% cov
    • Alignment Length
      529 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332247609
      XP_003272952
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      529 aa
    • E Value
      0E0
    • BLAST Score
      1,070.8 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003272952
      100% cov
    • Alignment Length
      529 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682552
      XP_002818981
    • Hit length
      529 aa
    • E Value
      0E0
    • BLAST Score
      1,017.7 bits
    • Similarity
      97.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002818981
      100% cov
    • Alignment Length
      529 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109085980
      XP_001109335
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      529 aa
    • E Value
      0E0
    • BLAST Score
      1,014.2 bits
    • Similarity
      98.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001109335
      100% cov
    • Alignment Length
      529 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296221690
      XP_002756861
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      529 aa
    • E Value
      0E0
    • BLAST Score
      1,008.1 bits
    • Similarity
      97.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002756861
      100% cov
    • Alignment Length
      529 aa
  • Saimiri boliviensis

    Saimiri boliviensis

    • Public DB hit
      GI:56122236
      AAV74269
    • Hit length
      514 aa
    • E Value
      0E0
    • BLAST Score
      963.4 bits
    • Similarity
      96.89%
    • Coverage
      97.16%
    • Alignment (schematic)

      SEQ ID NO 2
      97.16% cov
      AAV74269
      100% cov
    • Alignment Length
      514 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301757232
      XP_002914481
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      863.6 bits
    • Similarity
      87.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002914481
      100% cov
    • Alignment Length
      529 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73993952
      XP_543227
    • Hit length
      490 aa
    • E Value
      0E0
    • BLAST Score
      854.7 bits
    • Similarity
      91.79%
    • Coverage
      91.68%
    • Alignment (schematic)

      SEQ ID NO 2
      91.68% cov
      XP_543227
      99.39% cov
    • Alignment Length
      487 aa
Occurrence
60 times in PatSeqDB
Tools
SEQ ID NO
3
Length
1,908
Sequence Type
nucleotide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:68534212
      BC098443
      1 of 11 hits reported for Homo sapiens.
    • Hit length
      3,220 bp
    • E Value
      0E0
    • BLAST Score
      3,524.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      BC098443
      59.25% cov
    • Alignment Length
      1,908 bp
    • CIGAR string
      1908M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332844472
      XM_003314809
    • Hit length
      3,588 bp
    • E Value
      0E0
    • BLAST Score
      3,424.8 bits
    • Similarity
      99.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_003314809
      53.01% cov
    • Alignment Length
      1,909 bp
    • CIGAR string
      168MN66MDM2D37MN67MN317MN194MN276MN284MN399MN7MD2MD2M2D31MNI41M mismatches: 9 - insertions: 1 - deletions: 7
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297697237
      XM_002825726
    • Hit length
      2,537 bp
    • E Value
      0E0
    • BLAST Score
      3,338 bits
    • Similarity
      98.32%
    • Coverage
      99.69%
    • Alignment (schematic)

      SEQ ID NO 3
      99.69% cov
      XM_002825726
      75.05% cov
    • Alignment Length
      1,905 bp
    • CIGAR string
      6H4MN48MN17MN68MN69MN13MN9M3I104MN11MN137MN8MN44MN113MN83MN143MN26MN68MN8MN41MN59MN29MN5MN83MN541MN11MN2MN63MN26MD18M2N22M mismatches: 28 - insertions: 3 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332252737
      XM_003275465
    • Hit length
      3,310 bp
    • E Value
      0E0
    • BLAST Score
      3,262.3 bits
    • Similarity
      97.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_003275465
      57.43% cov
    • Alignment Length
      1,908 bp
    • CIGAR string
      13M3N13MN8MN12MN19MN4MN137MN20MDM2D105MN11MN146MN20MN137MN8MN32MN29MN32MN29MN74MN122MN23MN50MN11MN14MN29MN23MN14MN44MN54MN73MN2MN35MN182MN171MN36MN55MD2MD2M2D3MN45M2N22M mismatches: 39 - insertions: 0 - deletions: 7
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297297039
      XR_092234
    • Hit length
      2,261 bp
    • E Value
      0E0
    • BLAST Score
      3,000.1 bits
    • Similarity
      95.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XR_092234
      83.99% cov
    • Alignment Length
      1,922 bp
    • CIGAR string
      13MN13MN22MN13MN13MNMN6MN30MN10MN5MN11MN46M2D2M5DM3DM2DMDM2D2M3DN14MDM2D48MN56MN11MN97MN46MN85MN47MN5MN20MN5MN5MN29MN29MN20MN11MN20MN35MN11MN182MN8MN8MN44MN44MN6MN16MN35MN29MN74MN10MDMI35MN42MN61MN212MN49MN54MNMN5MN35MN30MN9M2NMND2MI9MI3MNIMIMI2M5IMI2M2I9M2N22M mismatches: 56 - insertions: 14 - deletions: 23
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:60656064
      AY889805
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,518 bp
    • E Value
      0E0
    • BLAST Score
      2,782.2 bits
    • Similarity
      99.8%
    • Coverage
      79.35%
    • Alignment (schematic)

      SEQ ID NO 3
      79.35% cov
      AY889805
      99.93% cov
    • Alignment Length
      1,517 bp
    • CIGAR string
      189H46MIM2I1467M205H mismatches: 0 - insertions: 3 - deletions: 0
Occurrence
11 times in PatSeqDB
Tools
SEQ ID NO
4
Length
504
Sequence Type
peptide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1458112
      AAB40110
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      504 aa
    • E Value
      0E0
    • BLAST Score
      1,039.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAB40110
      100% cov
    • Alignment Length
      504 aa
    • CIGAR string
      504M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297697238
      XP_002825772
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      1,002.3 bits
    • Similarity
      99.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002825772
      100% cov
    • Alignment Length
      505 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30584045
      AAP36271
    • Hit length
      506 aa
    • E Value
      0E0
    • BLAST Score
      993.4 bits
    • Similarity
      99.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAP36271
      99.8% cov
    • Alignment Length
      505 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332252738
      XP_003275513
    • Hit length
      503 aa
    • E Value
      0E0
    • BLAST Score
      989.9 bits
    • Similarity
      99.79%
    • Coverage
      94.84%
    • Alignment (schematic)

      SEQ ID NO 4
      94.84% cov
      XP_003275513
      95.03% cov
    • Alignment Length
      478 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332844473
      XP_003314857
    • Hit length
      568 aa
    • E Value
      0E0
    • BLAST Score
      989.6 bits
    • Similarity
      99.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003314857
      88.56% cov
    • Alignment Length
      504 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:27807295
      NP_777144
      1 of 3 hits reported for Bos taurus.
    • Hit length
      495 aa
    • E Value
      0E0
    • BLAST Score
      957.6 bits
    • Similarity
      97.29%
    • Coverage
      95.04%
    • Alignment (schematic)

      SEQ ID NO 4
      95.04% cov
      NP_777144
      96.77% cov
    • Alignment Length
      479 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335292251
      XP_001925795
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      951.4 bits
    • Similarity
      97.48%
    • Coverage
      94.64%
    • Alignment (schematic)

      SEQ ID NO 4
      94.64% cov
      XP_001925795
      94.46% cov
    • Alignment Length
      477 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194206424
      XP_001492753
    • Hit length
      488 aa
    • E Value
      0E0
    • BLAST Score
      948.7 bits
    • Similarity
      96.47%
    • Coverage
      95.44%
    • Alignment (schematic)

      SEQ ID NO 4
      95.44% cov
      XP_001492753
      98.57% cov
    • Alignment Length
      481 aa
Occurrence
11 times in PatSeqDB
Tools
SEQ ID NO
5
Length
3,496
Sequence Type
nucleotide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1458113
      U62433
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      3,343 bp
    • E Value
      0E0
    • BLAST Score
      6,174.5 bits
    • Similarity
      100%
    • Coverage
      95.62%
    • Alignment (schematic)

      SEQ ID NO 5
      95.62% cov
      U62433
      100% cov
    • Alignment Length
      3,343 bp
    • CIGAR string
      3343M153H mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262299
      XM_003280151
    • Hit length
      2,128 bp
    • E Value
      0E0
    • BLAST Score
      3,229.1 bits
    • Similarity
      94.15%
    • Coverage
      60.61%
    • Alignment (schematic)

      SEQ ID NO 5
      60.61% cov
      XM_003280151
      100% cov
    • Alignment Length
      2,137 bp
    • CIGAR string
      210H29MN11MN155MN32MN20MN50MN2MN29MN47MN23MN11MN71MN90MD3MIMIMNM2N2MNM2I2MNMINMIMNMN2MI2MDN2MDMD2NMIMNMI3MNMI2MI2M2I2MNMI2MD2MIMNMDMN5MDMIMN4MD2MDN3MNMI3NMI4M2N19MNMN5MN2MN9MN4MN26MN80MN86MN11MN74MN23MN47MN8MN23MN35MN17MN20MN11MN12MN6MN2MN6MN47MN3MN6MN22MN3MN8MN55MN67MN113MN29MN11MN11MN29MN15MN16MN7MN42MN131MN36MN23MNM2N12MNMN8MN4MN7MN23MN14MN18MN3MN22MN16MN15MN6MN5MN12MN2M2N7M1167H mismatches: 98 - insertions: 18 - deletions: 9
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
6
Length
627
Sequence Type
peptide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4502827
      NP_000735
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      627 aa
    • E Value
      0E0
    • BLAST Score
      1,288.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_000735
      100% cov
    • Alignment Length
      627 aa
    • CIGAR string
      627M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:77628021
      NP_001029286
    • Hit length
      627 aa
    • E Value
      0E0
    • BLAST Score
      1,270.4 bits
    • Similarity
      98.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001029286
      100% cov
    • Alignment Length
      627 aa
    • CIGAR string
      409MN20MN12MN37MN16M2N2MN21MN22MN7MN71M mismatches: 10 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297259377
      XP_001114265
    • Hit length
      697 aa
    • E Value
      0E0
    • BLAST Score
      1,168.7 bits
    • Similarity
      96.39%
    • Coverage
      97.13%
    • Alignment (schematic)

      SEQ ID NO 6
      97.13% cov
      XP_001114265
      87.23% cov
    • Alignment Length
      609 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332262300
      XP_003280199
    • Hit length
      630 aa
    • E Value
      0E0
    • BLAST Score
      1,112.1 bits
    • Similarity
      93.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003280199
      100% cov
    • Alignment Length
      630 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296200891
      XP_002747818
    • Hit length
      591 aa
    • E Value
      0E0
    • BLAST Score
      1,058.5 bits
    • Similarity
      93.88%
    • Coverage
      93.78%
    • Alignment (schematic)

      SEQ ID NO 6
      93.78% cov
      XP_002747818
      99.49% cov
    • Alignment Length
      588 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:281343225
      EFB18809
    • Hit length
      599 aa
    • E Value
      0E0
    • BLAST Score
      1,044.6 bits
    • Similarity
      90.37%
    • Coverage
      95.85%
    • Alignment (schematic)

      SEQ ID NO 6
      95.85% cov
      EFB18809
      100% cov
    • Alignment Length
      602 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73992736
      XP_543097
    • Hit length
      681 aa
    • E Value
      0E0
    • BLAST Score
      1,033.9 bits
    • Similarity
      88.49%
    • Coverage
      97.45%
    • Alignment (schematic)

      SEQ ID NO 6
      97.45% cov
      XP_543097
      88.99% cov
    • Alignment Length
      617 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:31542393
      NP_056545
      1 of 5 hits reported for Mus musculus.
    • Hit length
      629 aa
    • E Value
      0E0
    • BLAST Score
      1,024.6 bits
    • Similarity
      87.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_056545
      100% cov
    • Alignment Length
      631 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:300798278
      NP_001179829
    • Hit length
      614 aa
    • E Value
      0E0
    • BLAST Score
      1,013.8 bits
    • Similarity
      88.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001179829
      100% cov
    • Alignment Length
      628 aa
Occurrence
66 times in PatSeqDB
Tools
SEQ ID NO
7
Length
1,828
Sequence Type
nucleotide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1458115
      U62434
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      1,828 bp
    • E Value
      0E0
    • BLAST Score
      3,376.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      U62434
      100% cov
    • Alignment Length
      1,828 bp
    • CIGAR string
      1828M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297697236
      XR_095100
    • Hit length
      2,488 bp
    • E Value
      0E0
    • BLAST Score
      3,179.2 bits
    • Similarity
      98.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XR_095100
      73.51% cov
    • Alignment Length
      1,831 bp
    • CIGAR string
      14MN13MN2MN9MN30MN5MD3MN63MN24MN248MN176MN80MN17MN35MN45MN31MN14MN14MN224MN23MN56MN5MN47MN4MN23MN36MN49MI2MD56MN95MN134MN70M2I12MN31MN45MN60M mismatches: 31 - insertions: 3 - deletions: 2
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297297038
      XM_001108279
    • Hit length
      2,010 bp
    • E Value
      0E0
    • BLAST Score
      2,929.9 bits
    • Similarity
      95.42%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001108279
      90.95% cov
    • Alignment Length
      1,836 bp
    • CIGAR string
      10MN3MN2MN13MN22MN17MN5MN3MN10MN12MN39MN15MN8MN48MN10MNMN22MN121MN59MN19M2DM2D2MDMDMN7M2I2MNMD2MN4MDN2M10N46MN57MN34MN53MN35MN77MN14MN41MN77MN119MN2MN20MN23MN91MN23MN36MN17MN27MN23MN8MN181MN17MN30MN9MN17MN4MN7MN2MN34MN21M2I14MN49MN14MI9MNMN4MN6M2I3MI14MN31M mismatches: 68 - insertions: 8 - deletions: 8
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332252666
      XM_003275427
    • Hit length
      3,412 bp
    • E Value
      0E0
    • BLAST Score
      2,841.3 bits
    • Similarity
      97.87%
    • Coverage
      89.77%
    • Alignment (schematic)

      SEQ ID NO 7
      89.77% cov
      XM_003275427
      48.24% cov
    • Alignment Length
      1,647 bp
    • CIGAR string
      187H4MI24MD15MN24MN121MN44MN113MN59MN68MN5MN5MN17MN113MN14MN14MN104MN119MN2MN20MN115MN23MN36MN63MN14MN26MN54MN125MN123M2I64MN25MN11M2I3MI13MN32M mismatches: 28 - insertions: 6 - deletions: 1
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:157928605
      EU176798
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,447 bp
    • E Value
      0E0
    • BLAST Score
      2,590.1 bits
    • Similarity
      99.93%
    • Coverage
      76.86%
    • Alignment (schematic)

      SEQ ID NO 7
      76.86% cov
      EU176798
      97.1% cov
    • Alignment Length
      1,405 bp
    • CIGAR string
      154H1191MN213M269H mismatches: 1 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:76677944
      NM_001033934
    • Hit length
      1,407 bp
    • E Value
      0E0
    • BLAST Score
      2,549.5 bits
    • Similarity
      99.36%
    • Coverage
      76.97%
    • Alignment (schematic)

      SEQ ID NO 7
      76.97% cov
      NM_001033934
      100% cov
    • Alignment Length
      1,407 bp
    • CIGAR string
      154H6MN24MN546MN77MN278MN115MN139MN5MN6MN202M267H mismatches: 9 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296228627
      XM_002759847
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      2,296.5 bits
    • Similarity
      96.1%
    • Coverage
      76.97%
    • Alignment (schematic)

      SEQ ID NO 7
      76.97% cov
      XM_002759847
      100% cov
    • Alignment Length
      1,410 bp
    • CIGAR string
      154H17MN3MN22MI2M2I16MN13MN25MN6MN59MN3MN50MN62MN50MN53MN74MN38MN8MN14MN8MN2MN35MN8MN126MN45MN6MN17MN71MN5MN5MN5MN11MN23MN23MN11MN44MN53MN4MN3MN19MN32M2N2MN17MN3MN41MN10MN3MN29MN34MN85MN6MN21MN16MN4MN13M267H mismatches: 52 - insertions: 3 - deletions: 0
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194206421
      XM_001492676
    • Hit length
      1,347 bp
    • E Value
      0E0
    • BLAST Score
      1,941.9 bits
    • Similarity
      93.52%
    • Coverage
      71.28%
    • Alignment (schematic)

      SEQ ID NO 7
      71.28% cov
      XM_001492676
      97.18% cov
    • Alignment Length
      1,312 bp
    • CIGAR string
      258H7MN7MIMN3MDMN23MN5MN67MN5MN17MN38MN29MN39MN10MN12MN7MN8MN36MN13MN3MN7M2N22MN23MN23MN5MN2MN2MN8MN23MN24MN52MN14MD4MI16MN20MN2M2N3MDMI14MN5MN29MN29MN43MN9MN11MN41MN14MN8MN17MN23MN11MN2MN5MN9MN31MN5MN4MN21MNMN6MN3MN25MN8MN21MN46M2N10MN2MN12MN10MN3MN11M5IMI62MNMN5MN54MN2MN5MN26M267H mismatches: 73 - insertions: 9 - deletions: 3
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:31341783
      NM_174514
    • Hit length
      1,645 bp
    • E Value
      0E0
    • BLAST Score
      1,797.9 bits
    • Similarity
      89.99%
    • Coverage
      76.2%
    • Alignment (schematic)

      SEQ ID NO 7
      76.2% cov
      NM_174514
      84.68% cov
    • Alignment Length
      1,399 bp
    • CIGAR string
      203H13MN8MN4M2NMN8MN8MN2MDMIN8MN7MIMNMNMDMN4MN5MN12MN60MN12MN2MN2MN2MN11MN2MN35MN2MN17MN11MN2MN2MN20MN12MN10MN12MN7MN5MN39MN7MN5MN3MN8MNMN5MN2MN32MN8MN2MN5MN14MN2MN2MN32MN2MN21MNMN50MN5MN2MN47MN2M2N10MN8MN5MN26MN2MN71MN27MN16MN20MN8MN14MN11MN5MN2MN2MN20MN2MN5MN2MN5MN17MN14MN2M2NMN2MN5MN2MNMN23MN3MN2MN15MN24MN6MN6MN2MIMD3M2NM2N7MNMN13MNM2N10MN2M2N4M2N7MN2MN9MN10MNM2N75MNMN6MN34MN18MN2MN5MN15MN10MIMDMNMI4MN3MND2MN4MNIMD10M232H mismatches: 128 - insertions: 6 - deletions: 6
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335292254
      XM_001924570
    • Hit length
      1,565 bp
    • E Value
      0E0
    • BLAST Score
      1,713 bits
    • Similarity
      89.5%
    • Coverage
      74.18%
    • Alignment (schematic)

      SEQ ID NO 7
      74.18% cov
      XM_001924570
      86.65% cov
    • Alignment Length
      1,362 bp
    • CIGAR string
      205H8MN2MN8MN2MNMN4MN6MN8MN2M2N9MN7MIMN3MDMNMN8MN12MN79MN17MN26MN5MN2MN2MN37MIMD8MN8MN5MN8MN8MN12MN7MN38MN6MN7MN5MN3MN8MNMN8MN7MDMI26MN5MN8MN17MN2MN17MN14MN8MN11MN3MNMN2MN11MN17MN5MN11MN8MN2MN2MD4MI34MN2MN2M2N16MN2MN11MN8MN14MN20MN8MN56MN8MN3MN4MN8MN2MN2MN17MN2MN5MN8MN5MN11MN5MN11MN14MN2MN5MN2MN5MN2MN8MN5MN5MN2MDMI4MN2MN2MN8MN2MNMN23MN9MN12MI3MDMN2MN15M2N6MN8MN5M2NMN8M3N10MN4M2N4MN2MN5M2N13MN2MN2MN6MNMN8MN44MN29MN2M2NMN60MN2MN5MN26M267H mismatches: 131 - insertions: 6 - deletions: 6
Occurrence
14 times in PatSeqDB
Tools
SEQ ID NO
8
Length
468
Sequence Type
peptide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1458116
      AAB40112
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      468 aa
    • E Value
      0E0
    • BLAST Score
      964.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAB40112
      100% cov
    • Alignment Length
      468 aa
    • CIGAR string
      468M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:76677945
      NP_001029106
    • Hit length
      468 aa
    • E Value
      0E0
    • BLAST Score
      951.4 bits
    • Similarity
      99.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001029106
      100% cov
    • Alignment Length
      468 aa
    • CIGAR string
      2MN7MN339MN46MNMNMN66M mismatches: 6 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335292255
      XP_001924605
    • Hit length
      475 aa
    • E Value
      0E0
    • BLAST Score
      890.6 bits
    • Similarity
      94.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_001924605
      100% cov
    • Alignment Length
      475 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332252667
      XP_003275475
    • Hit length
      457 aa
    • E Value
      0E0
    • BLAST Score
      880.9 bits
    • Similarity
      97.81%
    • Coverage
      97.65%
    • Alignment (schematic)

      SEQ ID NO 8
      97.65% cov
      XP_003275475
      100% cov
    • Alignment Length
      457 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296228628
      XP_002759893
    • Hit length
      469 aa
    • E Value
      0E0
    • BLAST Score
      865.1 bits
    • Similarity
      98.61%
    • Coverage
      92.09%
    • Alignment (schematic)

      SEQ ID NO 8
      92.09% cov
      XP_002759893
      91.9% cov
    • Alignment Length
      431 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:27806245
      NP_776939
    • Hit length
      475 aa
    • E Value
      0E0
    • BLAST Score
      862.1 bits
    • Similarity
      94.83%
    • Coverage
      99.15%
    • Alignment (schematic)

      SEQ ID NO 8
      99.15% cov
      NP_776939
      97.68% cov
    • Alignment Length
      464 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109082074
      XP_001108279
    • Hit length
      466 aa
    • E Value
      0E0
    • BLAST Score
      861.3 bits
    • Similarity
      96.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_001108279
      100% cov
    • Alignment Length
      468 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194206422
      XP_001492726
    • Hit length
      448 aa
    • E Value
      0E0
    • BLAST Score
      849.4 bits
    • Similarity
      97.02%
    • Coverage
      92.74%
    • Alignment (schematic)

      SEQ ID NO 8
      92.74% cov
      XP_001492726
      97.32% cov
    • Alignment Length
      436 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:46371165
      AAS90351
      1 of 3 hits reported for Rattus norvegicus.
    • Hit length
      452 aa
    • E Value
      0E0
    • BLAST Score
      842 bits
    • Similarity
      94.26%
    • Coverage
      96.79%
    • Alignment (schematic)

      SEQ ID NO 8
      96.79% cov
      AAS90351
      100% cov
    • Alignment Length
      453 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301775282
      XP_002923062
    • Hit length
      435 aa
    • E Value
      0E0
    • BLAST Score
      825.9 bits
    • Similarity
      96.07%
    • Coverage
      92.52%
    • Alignment (schematic)

      SEQ ID NO 8
      92.52% cov
      XP_002923062
      99.54% cov
    • Alignment Length
      433 aa
  • Ornithorhynchus anatinus

    Ornithorhynchus anatinus

    • Public DB hit
      GI:149633636
      XP_001513156
    • Hit length
      484 aa
    • E Value
      0E0
    • BLAST Score
      823.9 bits
    • Similarity
      94.92%
    • Coverage
      92.52%
    • Alignment (schematic)

      SEQ ID NO 8
      92.52% cov
      XP_001513156
      89.46% cov
    • Alignment Length
      433 aa
Occurrence
17 times in PatSeqDB
Tools
SEQ ID NO
9
Length
1,743
Sequence Type
nucleotide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:1458117
      U62435
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      1,743 bp
    • E Value
      0E0
    • BLAST Score
      3,219.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      U62435
      100% cov
    • Alignment Length
      1,743 bp
    • CIGAR string
      1743M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682798
      XM_002819051
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,384 bp
    • E Value
      0E0
    • BLAST Score
      3,031.5 bits
    • Similarity
      98.16%
    • Coverage
      99.66%
    • Alignment (schematic)

      SEQ ID NO 9
      99.66% cov
      XM_002819051
      72.86% cov
    • Alignment Length
      1,737 bp
    • CIGAR string
      3H25MN85MN9MN21MN27MN26MN25MN8M2N56MN145MN33MN62MN149MN23MN53MN5MN167MN83MN72MN45MN6MN66MN32MN48MN2MN84MN5MN3MN95MN37MN176MN32M3H mismatches: 32 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332241041
      XM_003269649
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      2,373 bp
    • E Value
      0E0
    • BLAST Score
      2,948.4 bits
    • Similarity
      97.35%
    • Coverage
      99.66%
    • Alignment (schematic)

      SEQ ID NO 9
      99.66% cov
      XM_003269649
      72.95% cov
    • Alignment Length
      1,737 bp
    • CIGAR string
      3H78MN32MN31MN7MDM5D13M2N32MN18MN30MN35MN20MN123MN34MN2MN59MN143MN89MN251MN59MN20MN11MN21MN10MN19M2N68MN58M2N8MN8MN41MN26MN9MN22MN61MN24MN126MN33MN58M2N6MN5M3H mismatches: 40 - insertions: 0 - deletions: 6
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297299332
      XM_001099152
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      2,224 bp
    • E Value
      0E0
    • BLAST Score
      2,878.2 bits
    • Similarity
      96.6%
    • Coverage
      99.54%
    • Alignment (schematic)

      SEQ ID NO 9
      99.54% cov
      XM_001099152
      78.01% cov
    • Alignment Length
      1,736 bp
    • CIGAR string
      3H12MN13MN55MN28MN23MN7MN22MN4M2N9MN37MN3MN24MN41MN14MN5MN8MN143MN5MN2MN59M2N7MN164MN53MN26MN80MN17MN47MN74MN8MN44MN69MN4MN5MN44MN33MN17MN41MN9MN33MNMN15MN8MN8MN5MI2MD9MN9MN4MN7MN42MN8MN107MN40MN20MN6MN62MN15MN20M5H mismatches: 57 - insertions: 1 - deletions: 1
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296222099
      XM_002757013
    • Hit length
      1,795 bp
    • E Value
      0E0
    • BLAST Score
      2,763.7 bits
    • Similarity
      95.45%
    • Coverage
      99.54%
    • Alignment (schematic)

      SEQ ID NO 9
      99.54% cov
      XM_002757013
      96.49% cov
    • Alignment Length
      1,737 bp
    • CIGAR string
      3H6MN5MN11MNMN38M2DNMD2MDMN36MIN26MN3MIMDN8MN70M2N5MN46MN12MN8MN2MN17MN26MN53MN34MN6MN2MN17MN2MN5MN17MN17MN23MN8MN28MN39MN44MN104MN29MN17MN2MN74MN23MN113MN107MN2MN6MNMN30MN73MN4MN15M2N4MN6MN4MN4MN60MN26MN9MN3MN9MN8MN32MN31MN84MN11MN56MN14MNMN9MN17MN17MN12MN11MN5MN5M5H mismatches: 72 - insertions: 2 - deletions: 5
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:312152597
      HQ448331
    • Hit length
      1,584 bp
    • E Value
      0E0
    • BLAST Score
      2,743.4 bits
    • Similarity
      100%
    • Coverage
      85.2%
    • Alignment (schematic)

      SEQ ID NO 9
      85.2% cov
      HQ448331
      93.75% cov
    • Alignment Length
      1,485 bp
    • CIGAR string
      141H1485M117H mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:77539749
      NM_001034094
    • Hit length
      1,485 bp
    • E Value
      0E0
    • BLAST Score
      2,710.2 bits
    • Similarity
      99.6%
    • Coverage
      85.2%
    • Alignment (schematic)

      SEQ ID NO 9
      85.2% cov
      NM_001034094
      100% cov
    • Alignment Length
      1,485 bp
    • CIGAR string
      142H327MN304MN86MN149MN197MN173MN243M116H mismatches: 6 - insertions: 0 - deletions: 0
Occurrence
15 times in PatSeqDB
Tools
SEQ ID NO
10
Length
494
Sequence Type
peptide
Locations
Claims, Detailed Description
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4757982
      NP_004189
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      494 aa
    • E Value
      0E0
    • BLAST Score
      1,023.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_004189
      100% cov
    • Alignment Length
      494 aa
    • CIGAR string
      494M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:77539750
      NP_001029266
    • Hit length
      494 aa
    • E Value
      0E0
    • BLAST Score
      1,021.5 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001029266
      100% cov
    • Alignment Length
      494 aa
    • CIGAR string
      109MN303MN80M mismatches: 2 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682799
      XP_002819097
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      494 aa
    • E Value
      0E0
    • BLAST Score
      1,002.3 bits
    • Similarity
      98.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002819097
      100% cov
    • Alignment Length
      494 aa
    • CIGAR string
      MN26MN2MN67MN218MN14MN24MN10MN15M2N31MN31MN43M mismatches: 12 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296222100
      XP_002757059
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      519 aa
    • E Value
      0E0
    • BLAST Score
      998.4 bits
    • Similarity
      97.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002757059
      95.18% cov
    • Alignment Length
      494 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332241042
      XP_003269697
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      492 aa
    • E Value
      0E0
    • BLAST Score
      991.1 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003269697
      100% cov
    • Alignment Length
      494 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109086283
      XP_001099152
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      494 aa
    • E Value
      0E0
    • BLAST Score
      984.2 bits
    • Similarity
      97.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001099152
      100% cov
    • Alignment Length
      494 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149742492
      XP_001488629
    • Hit length
      493 aa
    • E Value
      0E0
    • BLAST Score
      906 bits
    • Similarity
      93.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001488629
      100% cov
    • Alignment Length
      494 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335304353
      XP_003359919
    • Hit length
      494 aa
    • E Value
      0E0
    • BLAST Score
      899.8 bits
    • Similarity
      92.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003359919
      100% cov
    • Alignment Length
      494 aa
Occurrence
53 times in PatSeqDB
Tools

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