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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
14 sequences found in this patent (in total)

Displaying 1 - 10 of 14 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
402
Type
DNA
Locations
Undetermined

Declared organism:
Mus musculus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:1513181
      U65534
      1 of 17 hits reported for Mus musculus.
    • Hit length
      1,517 bp
    • E Value
      1.48E-168
    • BLAST Score
      601.3 bits
    • Similarity
      93.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      U65534
      26.3% cov
    • Alignment Length
      402 bp
    • CIGAR string
      45MN35MN56MN10MNMN36MN9MN12M2N2MN7MN6MN56MN28MN26MNM2DM3N2MNMDMN5MN4MN33M mismatches: 22 - insertions: 0 - deletions: 3
  • Mus musculus domesticus

    Mus musculus domesticus

    • Public DB hit
      GI:309346
      L20962
      1 of 6 hits reported for Mus musculus domesticus.
    • Hit length
      399 bp
    • E Value
      1.48E-168
    • BLAST Score
      601.3 bits
    • Similarity
      93.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      L20962
      100% cov
    • Alignment Length
      403 bp
    • CIGAR string
      45MN35MN69MN36MN22M2N2MN7MN6MN56MN28MN26MN2M3ND3M2DMD2MNM2NMI4MN8MN24M mismatches: 20 - insertions: 1 - deletions: 4
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:1513185
      U65536
      1 of 2 hits reported for synthetic construct.
    • Hit length
      825 bp
    • E Value
      6.9E-167
    • BLAST Score
      595.7 bits
    • Similarity
      93.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      U65536
      48.36% cov
    • Alignment Length
      402 bp
    • CIGAR string
      45MN35MN56MN10MNMN36MN9MN12M2N2MN7MN6MN56MN17MN10MN26MNM2DM3N2MNMDMN5MN4MN33M mismatches: 23 - insertions: 0 - deletions: 3
Occurrence
59 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
134
Type
peptide
Locations
Undetermined

Declared organism:
Mus musculus

Determined organism:
  • Mus musculus domesticus

    Mus musculus domesticus

    • Public DB hit
      GI:309347
      AAB01614
      1 of 7 hits reported for Mus musculus domesticus.
    • Hit length
      133 aa
    • E Value
      2.96E-62
    • BLAST Score
      241.9 bits
    • Similarity
      92.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAB01614
      100% cov
    • Alignment Length
      134 aa
    • CIGAR string
      15MN11MN22MN19MN3MNMN28MN8M3NMD3N12M mismatches: 13 - insertions: 0 - deletions: 1
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:281307026
      3G5X_B
      1 of 17 hits reported for Mus musculus.
    • Hit length
      216 aa
    • E Value
      3.01E-62
    • BLAST Score
      241.9 bits
    • Similarity
      100%
    • Coverage
      86.57%
    • Alignment (schematic)

      SEQ ID NO 2
      86.57% cov
      3G5X_B
      53.7% cov
    • Alignment Length
      116 aa
    • CIGAR string
      18H116M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:1513186
      AAB06746
    • Hit length
      268 aa
    • E Value
      1.48E-61
    • BLAST Score
      239.6 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAB06746
      49.63% cov
    • Alignment Length
      135 aa
Occurrence
88 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
384
Type
DNA
Locations
Undetermined

Declared organism:
Mus musculus

Determined organism:
  • Mus sp.

    Mus sp.

    • Public DB hit
      GI:240534
      S72847
    • Hit length
      420 bp
    • E Value
      1.82E-167
    • BLAST Score
      597.6 bits
    • Similarity
      95.71%
    • Coverage
      96.61%
    • Alignment (schematic)

      SEQ ID NO 3
      96.61% cov
      S72847
      88.33% cov
    • Alignment Length
      373 bp
    • CIGAR string
      12H8MN111MN9MN3MNMIMD10MN14MN17MN24MN5MN4MN36MN53MN23MDMI37M1H mismatches: 12 - insertions: 2 - deletions: 2
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:52187
      X59052
      1 of 20 hits reported for Mus musculus.
    • Hit length
      337 bp
    • E Value
      1.46E-143
    • BLAST Score
      518.2 bits
    • Similarity
      94.38%
    • Coverage
      87.76%
    • Alignment (schematic)

      SEQ ID NO 3
      87.76% cov
      X59052
      100% cov
    • Alignment Length
      338 bp
    • CIGAR string
      44H74MN12M2N9MN5M2N4MN6MN13MN2MN7MN21MN15MN4MI2MN3MD21MN8MN53MN60M3H mismatches: 17 - insertions: 1 - deletions: 1
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:274138184
      AB537502
      1 of 2 hits reported for synthetic construct.
    • Hit length
      702 bp
    • E Value
      4.12E-134
    • BLAST Score
      486.8 bits
    • Similarity
      94.64%
    • Coverage
      81.77%
    • Alignment (schematic)

      SEQ ID NO 3
      81.77% cov
      AB537502
      44.73% cov
    • Alignment Length
      317 bp
  • Mus musculus domesticus

    Mus musculus domesticus

    • Public DB hit
      GI:310695292
      HM448828
      1 of 2 hits reported for Mus musculus domesticus.
    • Hit length
      300 bp
    • E Value
      5.33E-133
    • BLAST Score
      483.1 bits
    • Similarity
      95.67%
    • Coverage
      78.12%
    • Alignment (schematic)

      SEQ ID NO 3
      78.12% cov
      HM448828
      100% cov
    • Alignment Length
      300 bp
Occurrence
59 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
128
Type
peptide
Locations
Undetermined

Declared organism:
Mus musculus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:288562952
      3G5V_A
      1 of 19 hits reported for Mus musculus.
    • Hit length
      212 aa
    • E Value
      5.67E-57
    • BLAST Score
      224.6 bits
    • Similarity
      100%
    • Coverage
      84.38%
    • Alignment (schematic)

      SEQ ID NO 4
      84.38% cov
      3G5V_A
      50.94% cov
    • Alignment Length
      108 aa
    • CIGAR string
      20H38MN69M mismatches: 1 - insertions: 0 - deletions: 0
  • Mus sp.

    Mus sp.

    • Public DB hit
      GI:240535
      AAB20603
    • Hit length
      140 aa
    • E Value
      1.41E-55
    • BLAST Score
      219.9 bits
    • Similarity
      94.78%
    • Coverage
      89.84%
    • Alignment (schematic)

      SEQ ID NO 4
      89.84% cov
      AAB20603
      82.14% cov
    • Alignment Length
      115 aa
    • CIGAR string
      13H31MN2MNMN3MN4MN5MN7MNMNMN38MN12M mismatches: 10 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:274138185
      BAI53538
      1 of 4 hits reported for synthetic construct.
    • Hit length
      234 aa
    • E Value
      9.45E-51
    • BLAST Score
      203.8 bits
    • Similarity
      97.2%
    • Coverage
      83.59%
    • Alignment (schematic)

      SEQ ID NO 4
      83.59% cov
      BAI53538
      45.73% cov
    • Alignment Length
      107 aa
  • Mus musculus domesticus

    Mus musculus domesticus

    • Public DB hit
      GI:310695293
      ADP05695
    • Hit length
      100 aa
    • E Value
      4.74E-47
    • BLAST Score
      191.4 bits
    • Similarity
      97%
    • Coverage
      78.12%
    • Alignment (schematic)

      SEQ ID NO 4
      78.12% cov
      ADP05695
      100% cov
    • Alignment Length
      100 aa
Occurrence
88 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
13
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Parabacteroides sp. D13

    Parabacteroides sp. D13

    • Public DB hit
      GI:256839522
      ZP_05545031
    • Hit length
      386 aa
    • E Value
      4.7E1
    • BLAST Score
      30.8 bits
    • Similarity
      92.31%
    • Coverage
      92.31%
    • Alignment (schematic)

      SEQ ID NO 5
      92.31% cov
      ZP_05545031
      3.37% cov
    • Alignment Length
      13 aa
    • CIGAR string
      1HN4MN2MNMI2M mismatches: 3 - insertions: 1 - deletions: 0
  • Bacteroides sp. 2_1_7

    Bacteroides sp. 2_1_7

    • Public DB hit
      GI:255014143
      ZP_05286269
    • Hit length
      386 aa
    • E Value
      5.01E1
    • BLAST Score
      30.8 bits
    • Similarity
      92.31%
    • Coverage
      92.31%
    • Alignment (schematic)

      SEQ ID NO 5
      92.31% cov
      ZP_05286269
      3.37% cov
    • Alignment Length
      13 aa
    • CIGAR string
      1HN4MN2MNMI2M mismatches: 3 - insertions: 1 - deletions: 0
Occurrence
263 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
13
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Parabacteroides sp. D13

    Parabacteroides sp. D13

    • Public DB hit
      GI:256839522
      ZP_05545031
    • Hit length
      386 aa
    • E Value
      4.7E1
    • BLAST Score
      30.8 bits
    • Similarity
      92.31%
    • Coverage
      92.31%
    • Alignment (schematic)

      SEQ ID NO 6
      92.31% cov
      ZP_05545031
      3.37% cov
    • Alignment Length
      13 aa
    • CIGAR string
      1HN4MN2MNMI2M mismatches: 3 - insertions: 1 - deletions: 0
  • Bacteroides sp. 2_1_7

    Bacteroides sp. 2_1_7

    • Public DB hit
      GI:255014143
      ZP_05286269
    • Hit length
      386 aa
    • E Value
      5.01E1
    • BLAST Score
      30.8 bits
    • Similarity
      92.31%
    • Coverage
      92.31%
    • Alignment (schematic)

      SEQ ID NO 6
      92.31% cov
      ZP_05286269
      3.37% cov
    • Alignment Length
      13 aa
    • CIGAR string
      1HN4MN2MNMI2M mismatches: 3 - insertions: 1 - deletions: 0
Occurrence
263 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
6,149
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Phagemid vector pGALD9DLFN

    Phagemid vector pGALD9DLFN

    • Public DB hit
      GI:311788542
      HQ528250
    • Hit length
      4,716 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      41.21%
    • Alignment (schematic)

      SEQ ID NO 7
      41.21% cov
      HQ528250
      53.94% cov
    • Alignment Length
      2,546 bp
    • CIGAR string
      3615H341MI76M5I2M3IMI57MI80M2D151MN272MN696MN23MN21MI808M mismatches: 4 - insertions: 12 - deletions: 2
  • Phagemid vector pGALD9DL

    Phagemid vector pGALD9DL

    • Public DB hit
      GI:311788540
      HQ528249
    • Hit length
      3,676 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      41.21%
    • Alignment (schematic)

      SEQ ID NO 7
      41.21% cov
      HQ528249
      69.21% cov
    • Alignment Length
      2,546 bp
    • CIGAR string
      3615H341MI76M5I2M3IMI57MI80M2D151MN272MN696MN23MN21MI808M mismatches: 4 - insertions: 12 - deletions: 2
  • Phagemid vector pGALD9

    Phagemid vector pGALD9

    • Public DB hit
      GI:311788538
      HQ528248
    • Hit length
      3,736 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      41.21%
    • Alignment (schematic)

      SEQ ID NO 7
      41.21% cov
      HQ528248
      68.09% cov
    • Alignment Length
      2,546 bp
    • CIGAR string
      3615H341MI76M5I2M3IMI57MI80M2D151MN272MN696MN23MN21MI808M mismatches: 4 - insertions: 12 - deletions: 2
  • Phagemid vector pGALD7DLFN

    Phagemid vector pGALD7DLFN

    • Public DB hit
      GI:311788535
      HQ528247
    • Hit length
      4,719 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      41.21%
    • Alignment (schematic)

      SEQ ID NO 7
      41.21% cov
      HQ528247
      53.91% cov
    • Alignment Length
      2,546 bp
  • Phagemid vector pGALD7DL

    Phagemid vector pGALD7DL

    • Public DB hit
      GI:311788533
      HQ528246
    • Hit length
      3,679 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      41.21%
    • Alignment (schematic)

      SEQ ID NO 7
      41.21% cov
      HQ528246
      69.15% cov
    • Alignment Length
      2,546 bp
  • Phagemid vector pGALD7

    Phagemid vector pGALD7

    • Public DB hit
      GI:311788531
      HQ528245
    • Hit length
      3,739 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      41.21%
    • Alignment (schematic)

      SEQ ID NO 7
      41.21% cov
      HQ528245
      68.04% cov
    • Alignment Length
      2,546 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:2462915
      Y14584
    • Hit length
      4,864 bp
    • E Value
      0E0
    • BLAST Score
      4,579 bits
    • Similarity
      99.29%
    • Coverage
      41.11%
    • Alignment (schematic)

      SEQ ID NO 7
      41.11% cov
      Y14584
      52.18% cov
    • Alignment Length
      2,540 bp
  • Expression vector CS111

    Expression vector CS111

    • Public DB hit
      GI:108671052
      DQ649434
    • Hit length
      4,146 bp
    • E Value
      0E0
    • BLAST Score
      4,543.9 bits
    • Similarity
      99.25%
    • Coverage
      40.87%
    • Alignment (schematic)

      SEQ ID NO 7
      40.87% cov
      DQ649434
      60.83% cov
    • Alignment Length
      2,525 bp
  • Expression vector CS108

    Expression vector CS108

    • Public DB hit
      GI:108671050
      DQ649433
    • Hit length
      4,149 bp
    • E Value
      0E0
    • BLAST Score
      4,543.9 bits
    • Similarity
      99.25%
    • Coverage
      40.87%
    • Alignment (schematic)

      SEQ ID NO 7
      40.87% cov
      DQ649433
      60.79% cov
    • Alignment Length
      2,525 bp
  • Expression vector CS107

    Expression vector CS107

    • Public DB hit
      GI:108671048
      DQ649432
    • Hit length
      4,131 bp
    • E Value
      0E0
    • BLAST Score
      4,543.9 bits
    • Similarity
      99.25%
    • Coverage
      40.87%
    • Alignment (schematic)

      SEQ ID NO 7
      40.87% cov
      DQ649432
      61.05% cov
    • Alignment Length
      2,525 bp
  • Expression vector CS105

    Expression vector CS105

    • Public DB hit
      GI:108671046
      DQ649431
    • Hit length
      4,131 bp
    • E Value
      0E0
    • BLAST Score
      4,543.9 bits
    • Similarity
      99.25%
    • Coverage
      40.87%
    • Alignment (schematic)

      SEQ ID NO 7
      40.87% cov
      DQ649431
      61.05% cov
    • Alignment Length
      2,525 bp
  • Recombination vector pAdlox

    Recombination vector pAdlox

    • Public DB hit
      GI:1488684
      U62024
    • Hit length
      4,224 bp
    • E Value
      0E0
    • BLAST Score
      4,536.5 bits
    • Similarity
      99.28%
    • Coverage
      40.74%
    • Alignment (schematic)

      SEQ ID NO 7
      40.74% cov
      U62024
      59.54% cov
    • Alignment Length
      2,517 bp
  • Expression vector pCS2+zesr1

    Expression vector pCS2+zesr1

    • Public DB hit
      GI:294718145
      GU394081
    • Hit length
      6,054 bp
    • E Value
      0E0
    • BLAST Score
      4,534.6 bits
    • Similarity
      99.25%
    • Coverage
      40.79%
    • Alignment (schematic)

      SEQ ID NO 7
      40.79% cov
      GU394081
      41.58% cov
    • Alignment Length
      2,520 bp
  • Expression vector pAttR-YFP-2xHA

    Expression vector pAttR-YFP-2xHA

    • Public DB hit
      GI:315435099
      HM989367
    • Hit length
      6,572 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      HM989367
      38.24% cov
    • Alignment Length
      2,515 bp
  • Cloning vector pSIM3

    Cloning vector pSIM3

    • Public DB hit
      GI:312618309
      HM750246
    • Hit length
      15,596 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      HM750246
      16.11% cov
    • Alignment Length
      2,515 bp
  • Cloning vector pSIM1

    Cloning vector pSIM1

    • Public DB hit
      GI:312618303
      HM750245
    • Hit length
      15,584 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      HM750245
      16.13% cov
    • Alignment Length
      2,515 bp
  • Expression shuttle vector pIMB4

    Expression shuttle vector pIMB4

    • Public DB hit
      GI:304282217
      HM756283
    • Hit length
      8,703 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      HM756283
      28.88% cov
    • Alignment Length
      2,515 bp
  • Transformation vector pTtag

    Transformation vector pTtag

    • Public DB hit
      GI:225675557
      FJ789658
    • Hit length
      6,355 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      FJ789658
      39.54% cov
    • Alignment Length
      2,515 bp
  • Chloroplast transformation Vector pTox

    Chloroplast transformation Vector pTox

    • Public DB hit
      GI:182410399
      EU450674
    • Hit length
      6,977 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      EU450674
      36.02% cov
    • Alignment Length
      2,515 bp
  • Shuttle vector phcAd.DYS-FL

    Shuttle vector phcAd.DYS-FL

    • Public DB hit
      GI:158323699
      EU048698
    • Hit length
      30,440 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      EU048698
      8.26% cov
    • Alignment Length
      2,515 bp
  • Transposition vector MightyMu_GUSB

    Transposition vector MightyMu_GUSB

    • Public DB hit
      GI:159149199
      EU223249
    • Hit length
      7,773 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      EU223249
      32.33% cov
    • Alignment Length
      2,515 bp
  • Transposition vector MightyMu_ACT

    Transposition vector MightyMu_ACT

    • Public DB hit
      GI:159149197
      EU223248
    • Hit length
      5,521 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      EU223248
      45.52% cov
    • Alignment Length
      2,515 bp
  • PCR template vector pTF104

    PCR template vector pTF104

    • Public DB hit
      GI:146760347
      AB303314
    • Hit length
      4,608 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      AB303314
      54.54% cov
    • Alignment Length
      2,515 bp
  • PCR template vector pTF102

    PCR template vector pTF102

    • Public DB hit
      GI:146760344
      AB303313
    • Hit length
      4,285 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      AB303313
      58.65% cov
    • Alignment Length
      2,515 bp
  • PCR template vector pTF103

    PCR template vector pTF103

    • Public DB hit
      GI:146760341
      AB303312
    • Hit length
      4,428 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      40.71%
    • Alignment (schematic)

      SEQ ID NO 7
      40.71% cov
      AB303312
      56.75% cov
    • Alignment Length
      2,515 bp
Occurrence
44 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
6,625
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Phagemid vector pGALD9DLFN

    Phagemid vector pGALD9DLFN

    • Public DB hit
      GI:311788542
      HQ528250
    • Hit length
      4,716 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      38.25%
    • Alignment (schematic)

      SEQ ID NO 8
      38.25% cov
      HQ528250
      53.94% cov
    • Alignment Length
      2,546 bp
    • CIGAR string
      4091H341MI76M5I2M3IMI57MI80M2D151MN272MN696MN23MN21MI808M mismatches: 4 - insertions: 12 - deletions: 2
  • Phagemid vector pGALD9DL

    Phagemid vector pGALD9DL

    • Public DB hit
      GI:311788540
      HQ528249
    • Hit length
      3,676 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      38.25%
    • Alignment (schematic)

      SEQ ID NO 8
      38.25% cov
      HQ528249
      69.21% cov
    • Alignment Length
      2,546 bp
    • CIGAR string
      4091H341MI76M5I2M3IMI57MI80M2D151MN272MN696MN23MN21MI808M mismatches: 4 - insertions: 12 - deletions: 2
  • Phagemid vector pGALD9

    Phagemid vector pGALD9

    • Public DB hit
      GI:311788538
      HQ528248
    • Hit length
      3,736 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      38.25%
    • Alignment (schematic)

      SEQ ID NO 8
      38.25% cov
      HQ528248
      68.09% cov
    • Alignment Length
      2,546 bp
    • CIGAR string
      4091H341MI76M5I2M3IMI57MI80M2D151MN272MN696MN23MN21MI808M mismatches: 4 - insertions: 12 - deletions: 2
  • Phagemid vector pGALD7DLFN

    Phagemid vector pGALD7DLFN

    • Public DB hit
      GI:311788535
      HQ528247
    • Hit length
      4,719 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      38.25%
    • Alignment (schematic)

      SEQ ID NO 8
      38.25% cov
      HQ528247
      53.91% cov
    • Alignment Length
      2,546 bp
  • Phagemid vector pGALD7DL

    Phagemid vector pGALD7DL

    • Public DB hit
      GI:311788533
      HQ528246
    • Hit length
      3,679 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      38.25%
    • Alignment (schematic)

      SEQ ID NO 8
      38.25% cov
      HQ528246
      69.15% cov
    • Alignment Length
      2,546 bp
  • Phagemid vector pGALD7

    Phagemid vector pGALD7

    • Public DB hit
      GI:311788531
      HQ528245
    • Hit length
      3,739 bp
    • E Value
      0E0
    • BLAST Score
      4,590 bits
    • Similarity
      99.29%
    • Coverage
      38.25%
    • Alignment (schematic)

      SEQ ID NO 8
      38.25% cov
      HQ528245
      68.04% cov
    • Alignment Length
      2,546 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:2462915
      Y14584
    • Hit length
      4,864 bp
    • E Value
      0E0
    • BLAST Score
      4,579 bits
    • Similarity
      99.29%
    • Coverage
      38.16%
    • Alignment (schematic)

      SEQ ID NO 8
      38.16% cov
      Y14584
      52.18% cov
    • Alignment Length
      2,540 bp
  • Expression vector CS111

    Expression vector CS111

    • Public DB hit
      GI:108671052
      DQ649434
    • Hit length
      4,146 bp
    • E Value
      0E0
    • BLAST Score
      4,547.6 bits
    • Similarity
      99.25%
    • Coverage
      37.96%
    • Alignment (schematic)

      SEQ ID NO 8
      37.96% cov
      DQ649434
      60.88% cov
    • Alignment Length
      2,527 bp
  • Expression vector CS108

    Expression vector CS108

    • Public DB hit
      GI:108671050
      DQ649433
    • Hit length
      4,149 bp
    • E Value
      0E0
    • BLAST Score
      4,547.6 bits
    • Similarity
      99.25%
    • Coverage
      37.96%
    • Alignment (schematic)

      SEQ ID NO 8
      37.96% cov
      DQ649433
      60.83% cov
    • Alignment Length
      2,527 bp
  • Expression vector CS107

    Expression vector CS107

    • Public DB hit
      GI:108671048
      DQ649432
    • Hit length
      4,131 bp
    • E Value
      0E0
    • BLAST Score
      4,547.6 bits
    • Similarity
      99.25%
    • Coverage
      37.96%
    • Alignment (schematic)

      SEQ ID NO 8
      37.96% cov
      DQ649432
      61.1% cov
    • Alignment Length
      2,527 bp
  • Expression vector CS105

    Expression vector CS105

    • Public DB hit
      GI:108671046
      DQ649431
    • Hit length
      4,131 bp
    • E Value
      0E0
    • BLAST Score
      4,547.6 bits
    • Similarity
      99.25%
    • Coverage
      37.96%
    • Alignment (schematic)

      SEQ ID NO 8
      37.96% cov
      DQ649431
      61.1% cov
    • Alignment Length
      2,527 bp
  • Recombination vector pAdlox

    Recombination vector pAdlox

    • Public DB hit
      GI:1488684
      U62024
    • Hit length
      4,224 bp
    • E Value
      0E0
    • BLAST Score
      4,536.5 bits
    • Similarity
      99.28%
    • Coverage
      37.81%
    • Alignment (schematic)

      SEQ ID NO 8
      37.81% cov
      U62024
      59.54% cov
    • Alignment Length
      2,517 bp
  • Expression vector pCS2+zesr1

    Expression vector pCS2+zesr1

    • Public DB hit
      GI:294718145
      GU394081
    • Hit length
      6,054 bp
    • E Value
      0E0
    • BLAST Score
      4,534.6 bits
    • Similarity
      99.25%
    • Coverage
      37.86%
    • Alignment (schematic)

      SEQ ID NO 8
      37.86% cov
      GU394081
      41.58% cov
    • Alignment Length
      2,520 bp
  • Expression vector pAttR-YFP-2xHA

    Expression vector pAttR-YFP-2xHA

    • Public DB hit
      GI:315435099
      HM989367
    • Hit length
      6,572 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      HM989367
      38.24% cov
    • Alignment Length
      2,515 bp
  • Cloning vector pSIM3

    Cloning vector pSIM3

    • Public DB hit
      GI:312618309
      HM750246
    • Hit length
      15,596 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      HM750246
      16.11% cov
    • Alignment Length
      2,515 bp
  • Cloning vector pSIM1

    Cloning vector pSIM1

    • Public DB hit
      GI:312618303
      HM750245
    • Hit length
      15,584 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      HM750245
      16.13% cov
    • Alignment Length
      2,515 bp
  • Expression shuttle vector pIMB4

    Expression shuttle vector pIMB4

    • Public DB hit
      GI:304282217
      HM756283
    • Hit length
      8,703 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      HM756283
      28.88% cov
    • Alignment Length
      2,515 bp
  • Transformation vector pTtag

    Transformation vector pTtag

    • Public DB hit
      GI:225675557
      FJ789658
    • Hit length
      6,355 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      FJ789658
      39.54% cov
    • Alignment Length
      2,515 bp
  • Chloroplast transformation Vector pTox

    Chloroplast transformation Vector pTox

    • Public DB hit
      GI:182410399
      EU450674
    • Hit length
      6,977 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      EU450674
      36.02% cov
    • Alignment Length
      2,515 bp
  • Shuttle vector phcAd.DYS-FL

    Shuttle vector phcAd.DYS-FL

    • Public DB hit
      GI:158323699
      EU048698
    • Hit length
      30,440 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      EU048698
      8.26% cov
    • Alignment Length
      2,515 bp
  • Transposition vector MightyMu_GUSB

    Transposition vector MightyMu_GUSB

    • Public DB hit
      GI:159149199
      EU223249
    • Hit length
      7,773 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      EU223249
      32.33% cov
    • Alignment Length
      2,515 bp
  • Transposition vector MightyMu_ACT

    Transposition vector MightyMu_ACT

    • Public DB hit
      GI:159149197
      EU223248
    • Hit length
      5,521 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      EU223248
      45.52% cov
    • Alignment Length
      2,515 bp
  • PCR template vector pTF104

    PCR template vector pTF104

    • Public DB hit
      GI:146760347
      AB303314
    • Hit length
      4,608 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      AB303314
      54.54% cov
    • Alignment Length
      2,515 bp
  • PCR template vector pTF102

    PCR template vector pTF102

    • Public DB hit
      GI:146760344
      AB303313
    • Hit length
      4,285 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      AB303313
      58.65% cov
    • Alignment Length
      2,515 bp
  • PCR template vector pTF103

    PCR template vector pTF103

    • Public DB hit
      GI:146760341
      AB303312
    • Hit length
      4,428 bp
    • E Value
      0E0
    • BLAST Score
      4,532.8 bits
    • Similarity
      99.28%
    • Coverage
      37.78%
    • Alignment (schematic)

      SEQ ID NO 8
      37.78% cov
      AB303312
      56.75% cov
    • Alignment Length
      2,515 bp
Occurrence
44 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
234
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:41388186
      AAS01772
      1 of 15 hits reported for Homo sapiens.
    • Hit length
      236 aa
    • E Value
      6.58E-103
    • BLAST Score
      378.3 bits
    • Similarity
      87.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAS01772
      99.15% cov
    • Alignment Length
      234 aa
    • CIGAR string
      M3N2MNM2N7MN4MN7MNMNMN2MNMN3M2N2MNMNM3NMN2MN3M2NMN3M4NM3N11MNM2N6M2N4MN3MNM3N2MN7MN86MN23M mismatches: 45 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:15216022
      CAC51420
    • Hit length
      237 aa
    • E Value
      4.12E-102
    • BLAST Score
      375.6 bits
    • Similarity
      90.32%
    • Coverage
      92.74%
    • Alignment (schematic)

      SEQ ID NO 9
      92.74% cov
      CAC51420
      91.56% cov
    • Alignment Length
      217 aa
    • CIGAR string
      17HM2N2MN7MNMNMN2MNMN3M2NMN2MNM3NMN2MN3M2NMN3M2NMNM3N11MN2MN6M2N4MN3MN2M3N5MN3MN110M mismatches: 37 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:55670335
      1UM4_L
      1 of 4 hits reported for Mus musculus.
    • Hit length
      219 aa
    • E Value
      3.24E-101
    • BLAST Score
      372.5 bits
    • Similarity
      91.12%
    • Coverage
      91.45%
    • Alignment (schematic)

      SEQ ID NO 9
      91.45% cov
      1UM4_L
      97.72% cov
    • Alignment Length
      214 aa
  • unspecified (taxid:0)

    unspecified (taxid:0)

    • Public DB hit
      GI:122920388
      2HH0_L
      1 of 2 hits reported for taxid:0.
    • Hit length
      210 aa
    • E Value
      1.73E-99
    • BLAST Score
      367.1 bits
    • Similarity
      91.43%
    • Coverage
      89.74%
    • Alignment (schematic)

      SEQ ID NO 9
      89.74% cov
      2HH0_L
      100% cov
    • Alignment Length
      210 aa
  • Cloning vector pASK88-huHRS3-VH-EP3/1

    Cloning vector pASK88-huHRS3-VH-EP3/1

    • Public DB hit
      GI:57337320
      CAH65831
    • Hit length
      235 aa
    • E Value
      1.9E-99
    • BLAST Score
      366.7 bits
    • Similarity
      86.84%
    • Coverage
      97.01%
    • Alignment (schematic)

      SEQ ID NO 9
      97.01% cov
      CAH65831
      97.02% cov
    • Alignment Length
      228 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332813743
      XP_001141313
    • Hit length
      236 aa
    • E Value
      3.21E-99
    • BLAST Score
      365.9 bits
    • Similarity
      89.95%
    • Coverage
      93.59%
    • Alignment (schematic)

      SEQ ID NO 9
      93.59% cov
      XP_001141313
      92.8% cov
    • Alignment Length
      219 aa
Occurrence
48 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
463
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194381820
      BAG64279
      1 of 21 hits reported for Homo sapiens.
    • Hit length
      472 aa
    • E Value
      0E0
    • BLAST Score
      800.8 bits
    • Similarity
      91.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BAG64279
      98.52% cov
    • Alignment Length
      465 aa
    • CIGAR string
      M2NM4NM2NMNMNI3MN8MN5MN6MNMN6M3NMN4MN2M2N3MNMNM2N2MNMN8M5N7MNM3N3M2N3MN3M9N2MN2MN4MI68M2N168MNMN89M mismatches: 55 - insertions: 2 - deletions: 0
  • Rattus sp.

    Rattus sp.

    • Public DB hit
      GI:243866
      AAB21181
    • Hit length
      470 aa
    • E Value
      0E0
    • BLAST Score
      791.6 bits
    • Similarity
      90.99%
    • Coverage
      99.14%
    • Alignment (schematic)

      SEQ ID NO 10
      99.14% cov
      AAB21181
      98.94% cov
    • Alignment Length
      466 aa
    • CIGAR string
      4HMNMNM5N2MNMN8MN2MN11MNM3NMD2M2N2MN2MN2M2N3MNMNM5N3IMN4MNMNM5N7MNMNMN3M2N3MN3M3NM2N3IMN5MN5MI68M2N168MNMN89M mismatches: 53 - insertions: 7 - deletions: 1
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:122087338
      CAL63676
      1 of 3 hits reported for synthetic construct.
    • Hit length
      470 aa
    • E Value
      0E0
    • BLAST Score
      771.9 bits
    • Similarity
      89.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CAL63676
      100% cov
    • Alignment Length
      472 aa
Occurrence
48 times in PatSeqDB
Tools
PatSeq Finder

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