Plant Retroelements And Methods Related Thereto

Data obtained from: EMBL-EBI Pat NCBI GenBank USPTO Fulltext DDBJ Pat
334 sequences found in this patent (in total)

Filter sequences

Clear
Download sequences in fasta format: 228 peptides 106 nucleotides

Displaying 1 - 10 of 334 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
18
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Glycine max
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:332656411
      CP002687
      1 of 25 hits reported for Arabidopsis thaliana.
    • Hit length
      18,585,056 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002687
      0% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
2
Length
18
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Glycine max
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:332640072
      CP002686
      1 of 2 hits reported for Arabidopsis thaliana.
    • Hit length
      23,459,830 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002686
      0% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Solanum lycopersicum

    Solanum lycopersicum

    • Public DB hit
      GI:332164834
      AC244571
      1 of 2 hits reported for Solanum lycopersicum.
    • Hit length
      138,181 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC244571
      0.01% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Panicum virgatum

    Panicum virgatum

    • Public DB hit
      GI:312283753
      AC243222
    • Hit length
      134,170 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC243222
      0.01% cov
    • Alignment Length
      18 bp
  • Gossypioides kirkii

    Gossypioides kirkii

    • Public DB hit
      GI:312032524
      AC243091
      1 of 2 hits reported for Gossypioides kirkii.
    • Hit length
      195,252 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC243091
      0.01% cov
    • Alignment Length
      18 bp
  • Triticum aestivum

    Triticum aestivum

    • Public DB hit
      GI:300681569
      FN564436
      1 of 7 hits reported for Triticum aestivum.
    • Hit length
      711,534 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FN564436
      0% cov
    • Alignment Length
      18 bp
  • Pinus taeda

    Pinus taeda

    • Public DB hit
      GI:297747388
      AC241267
    • Hit length
      80,505 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC241267
      0.02% cov
    • Alignment Length
      18 bp
  • Arachis duranensis

    Arachis duranensis

    • Public DB hit
      GI:290796032
      GU480450
    • Hit length
      83,992 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GU480450
      0.02% cov
    • Alignment Length
      18 bp
  • Picea glauca

    Picea glauca

    • Public DB hit
      GI:270145480
      BT112432
      1 of 2 hits reported for Picea glauca.
    • Hit length
      1,205 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      BT112432
      1.49% cov
    • Alignment Length
      18 bp
  • Pteris vittata

    Pteris vittata

    • Public DB hit
      GI:261260453
      GQ927246
    • Hit length
      262 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      GQ927246
      6.87% cov
    • Alignment Length
      18 bp
  • Glycine max

    Glycine max

    • Public DB hit
      GI:229608992
      AC236296
      1 of 6 hits reported for Glycine max.
    • Hit length
      189,943 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC236296
      0.01% cov
    • Alignment Length
      18 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
3
Length
6
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Glycine max
Determined organism
Occurrence
36 times in PatSeqDB
Tools
SEQ ID NO
4
Length
7
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Podospora anserina S mat+

    Podospora anserina S mat+

    • Public DB hit
      GI:171694271
      XP_001912060
    • Hit length
      307 aa
    • E Value
      1E3
    • BLAST Score
      25.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001912060
      2.28% cov
    • Alignment Length
      7 aa
    • CIGAR string
      7M mismatches: 0 - insertions: 0 - deletions: 0
  • Neurospora tetrasperma FGSC 2508

    Neurospora tetrasperma FGSC 2508

    • Public DB hit
      GI:336472125
      EGO60285
    • Hit length
      278 aa
    • E Value
      1.22E3
    • BLAST Score
      25.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EGO60285
      2.52% cov
    • Alignment Length
      7 aa
    • CIGAR string
      7M mismatches: 0 - insertions: 0 - deletions: 0
  • Neurospora crassa OR74A

    Neurospora crassa OR74A

    • Public DB hit
      GI:85100986
      XP_961064
    • Hit length
      304 aa
    • E Value
      1.48E3
    • BLAST Score
      25.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_961064
      2.3% cov
    • Alignment Length
      7 aa
    • CIGAR string
      7M mismatches: 0 - insertions: 0 - deletions: 0
  • Ixodes scapularis

    Ixodes scapularis

    • Public DB hit
      GI:241691397
      XP_002411783
      1 of 2 hits reported for Ixodes scapularis.
    • Hit length
      336 aa
    • E Value
      1.63E3
    • BLAST Score
      25.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002411783
      2.08% cov
    • Alignment Length
      7 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:296087521
      CBI34110
    • Hit length
      644 aa
    • E Value
      1.63E3
    • BLAST Score
      25.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CBI34110
      1.09% cov
    • Alignment Length
      7 aa
  • Bacteroides fluxus YIT 12057

    Bacteroides fluxus YIT 12057

    • Public DB hit
      GI:329961990
      ZP_08300001
    • Hit length
      698 aa
    • E Value
      2.42E3
    • BLAST Score
      24.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_08300001
      1% cov
    • Alignment Length
      7 aa
  • Verticillium alfalfae VaMs.102

    Verticillium alfalfae VaMs.102

    • Public DB hit
      GI:302405929
      XP_003000801
    • Hit length
      777 aa
    • E Value
      6.13E3
    • BLAST Score
      23.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003000801
      0.9% cov
    • Alignment Length
      7 aa
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,263
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Glycine max

    Glycine max

    • Public DB hit
      GI:6671123
      AF186183
      1 of 8 hits reported for Glycine max.
    • Hit length
      12,886 bp
    • E Value
      0E0
    • BLAST Score
      2,294.7 bits
    • Similarity
      99.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF186183
      9.8% cov
    • Alignment Length
      1,263 bp
    • CIGAR string
      9MN6MNM2N649MN272MN173MN146M mismatches: 7 - insertions: 0 - deletions: 0
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
6
Length
421
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
7
Length
1,596
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Glycine max

    Glycine max

    • Public DB hit
      GI:6671122
      AF186182
      1 of 9 hits reported for Glycine max.
    • Hit length
      10,128 bp
    • E Value
      0E0
    • BLAST Score
      2,854.2 bits
    • Similarity
      99.06%
    • Coverage
      99.81%
    • Alignment (schematic)

      SEQ ID NO 7
      99.81% cov
      AF186182
      15.68% cov
    • Alignment Length
      1,595 bp
    • CIGAR string
      3H256MD404MD752MDMD14MN2MI3MI12MN98M2NM2N7M3D30M mismatches: 6 - insertions: 2 - deletions: 7
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
8
Length
532
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
9
Length
603
Sequence Type
nucleotide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Glycine max

    Glycine max

    • Public DB hit
      GI:6671124
      AF186184
      1 of 11 hits reported for Glycine max.
    • Hit length
      8,573 bp
    • E Value
      0E0
    • BLAST Score
      987.2 bits
    • Similarity
      96.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF186184
      7.03% cov
    • Alignment Length
      604 bp
    • CIGAR string
      11MN9MN46MN14MDMI26MN7MN6MN63M2N52MN3MN27MN61MN21MN7MN63MN14MN17MN61MN26MN9MN4MN33M mismatches: 21 - insertions: 1 - deletions: 1
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
10
Length
201
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Artificial
Determined organism
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:10177643
      BAB10790
      1 of 4 hits reported for Arabidopsis thaliana.
    • Hit length
      1,864 aa
    • E Value
      4.52E-89
    • BLAST Score
      331.6 bits
    • Similarity
      84.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BAB10790
      10.78% cov
    • Alignment Length
      201 aa
    • CIGAR string
      2MN3MNMN8M3NMN6MN15MN17MNM2N5MNM2NM2N2MN6M2N3MNMN2MNM6NM4NMN11MN2MN6MNMN4MNMN7MN18M2N2MNMN3MN11MN2MN6M mismatches: 48 - insertions: 0 - deletions: 0
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:147855150
      CAN81739
      1 of 14 hits reported for Vitis vinifera.
    • Hit length
      2,377 aa
    • E Value
      4.3E-84
    • BLAST Score
      315.1 bits
    • Similarity
      85.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CAN81739
      8.46% cov
    • Alignment Length
      201 aa
  • Asparagus officinalis

    Asparagus officinalis

    • Public DB hit
      GI:89179406
      ABD63142
    • Hit length
      1,788 aa
    • E Value
      1.82E-82
    • BLAST Score
      309.7 bits
    • Similarity
      86.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABD63142
      11.24% cov
    • Alignment Length
      201 aa
Occurrence
8 times in PatSeqDB
Tools

Download Citation


Feedback