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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
29 sequences found in this patent (in total)

Displaying 1 - 10 of 29 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
11,068
Type
nucleotide
Locations
Detailed Description

Declared organism:
Maraba virus

Determined organism:
  • Maraba virus

    Maraba virus

    • Public DB hit
      GI:336309156
      HQ660076
    • Hit length
      11,135 bp
    • E Value
      0E0
    • BLAST Score
      20,417.7 bits
    • Similarity
      99.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HQ660076
      99.4% cov
    • Alignment Length
      11,068 bp
    • CIGAR string
      863MN2781MN1187MN38MN6195M mismatches: 4 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus

    Vesicular stomatitis Indiana virus

    • Public DB hit
      GI:335932
      M35225
      1 of 24 hits reported for Vesicular stomatitis Indiana virus.
    • Hit length
      1,657 bp
    • E Value
      9.35E-179
    • BLAST Score
      640.1 bits
    • Similarity
      75.79%
    • Coverage
      12.3%
    • Alignment (schematic)

      SEQ ID NO 1
      12.3% cov
      M35225
      82.08% cov
    • Alignment Length
      1,396 bp
    • CIGAR string
      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 mismatches: 267 - insertions: 35 - deletions: 36
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
422
Type
peptide
Locations
Detailed Description

Declared organism:
Maraba Virus N

Determined organism:
  • Maraba virus

    Maraba virus

    • Public DB hit
      GI:336309159
      AEI52255
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      872.1 bits
    • Similarity
      99.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AEI52255
      100% cov
    • Alignment Length
      422 aa
    • CIGAR string
      289MN132M mismatches: 1 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus

    Vesicular stomatitis Indiana virus

    • Public DB hit
      GI:9627230
      NP_041712
      1 of 6 hits reported for Vesicular stomatitis Indiana virus.
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      805.4 bits
    • Similarity
      95.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_041712
      100% cov
    • Alignment Length
      422 aa
    • CIGAR string
      7MN2M3NMN17MN2M2N2MN23MN10MN3MN6MN2M2N3MN3MN2M2N5M2N2MN12MN3MN2MN28MN13MN5MN28MN52MN17MN8MN58MN6MNM4N18MN13M2N6M2N19M mismatches: 43 - insertions: 0 - deletions: 0
  • Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    • Public DB hit
      GI:218457793
      ACK77580
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      805.1 bits
    • Similarity
      95.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACK77580
      100% cov
    • Alignment Length
      422 aa
    • CIGAR string
      7MN2M5N17MN2M2N2MN23MN10MN3MN6MN2M2N3MN3MN2M2N5M2N2MN12MN3MN2MN28MN13MN5MN28MN52MN17MN8MN58MN6MNM4N18MN13M2N6M2N19M mismatches: 44 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    • Public DB hit
      GI:81945902
      Q8B0H4
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      804.3 bits
    • Similarity
      95.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q8B0H4
      100% cov
    • Alignment Length
      422 aa
  • Vesicular stomatitis Indiana virus (strain 85CLB South America)

    Vesicular stomatitis Indiana virus (strain 85CLB South America)

    • Public DB hit
      GI:81945907
      Q8B0H9
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      803.5 bits
    • Similarity
      95.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q8B0H9
      100% cov
    • Alignment Length
      422 aa
  • Vesicular stomatitis Indiana virus strain Glasgow

    Vesicular stomatitis Indiana virus strain Glasgow

    • Public DB hit
      GI:127942
      P11212
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      800.4 bits
    • Similarity
      95.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P11212
      100% cov
    • Alignment Length
      422 aa
  • Cocal virus

    Cocal virus

    • Public DB hit
      GI:171673111
      ACB47434
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      782.7 bits
    • Similarity
      94.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACB47434
      100% cov
    • Alignment Length
      422 aa
  • Vesicular stomatitis Alagoas virus

    Vesicular stomatitis Alagoas virus

    • Public DB hit
      GI:171673117
      ACB47439
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      753.8 bits
    • Similarity
      93.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACB47439
      100% cov
    • Alignment Length
      422 aa
  • Vesicular stomatitis virus

    Vesicular stomatitis virus

    • Public DB hit
      GI:336066
      AAA48461
      1 of 10 hits reported for Vesicular stomatitis virus.
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      639.8 bits
    • Similarity
      84.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAA48461
      100% cov
    • Alignment Length
      422 aa
  • Vesicular stomatitis virus (serotype New Jersey / strain Ogden)

    Vesicular stomatitis virus (serotype New Jersey / strain Ogden)

    • Public DB hit
      GI:127943
      P04881
    • Hit length
      422 aa
    • E Value
      9.2E-180
    • BLAST Score
      635.2 bits
    • Similarity
      84.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P04881
      100% cov
    • Alignment Length
      422 aa
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
265
Type
peptide
Locations
Detailed Description

Declared organism:
Maraba Virus P

Determined organism:
  • Maraba virus

    Maraba virus

    • Public DB hit
      GI:336309160
      AEI52256
    • Hit length
      265 aa
    • E Value
      4.01E-153
    • BLAST Score
      545.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AEI52256
      100% cov
    • Alignment Length
      265 aa
    • CIGAR string
      265M mismatches: 0 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus (strain 85CLB South America)

    Vesicular stomatitis Indiana virus (strain 85CLB South America)

    • Public DB hit
      GI:81945906
      Q8B0H8
    • Hit length
      265 aa
    • E Value
      4.47E-97
    • BLAST Score
      359.4 bits
    • Similarity
      83.4%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      Q8B0H8
      100% cov
    • Alignment Length
      265 aa
    • CIGAR string
      2MNMN2MNMN2MNM2N5MNMNMN2MN2MN2MNM2N4MNMNM3N4M2NM8NM2NMNMNMNM8NIN2M6N3MN4MN15M2N7MNMN2MN8MN13M2N2MN2M4N2M3N14MNM2NMNM2NM2N3MN2MNM2N2MN3MNM2N3MN2MN3M2N6MN4MN3MN3MN4MN8MN2MNM1H mismatches: 95 - insertions: 1 - deletions: 0
  • Vesicular stomatitis Indiana virus (strain 98COE North America)

    Vesicular stomatitis Indiana virus (strain 98COE North America)

    • Public DB hit
      GI:81945911
      Q8B0I3
    • Hit length
      265 aa
    • E Value
      1.38E-95
    • BLAST Score
      354.4 bits
    • Similarity
      82.26%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      Q8B0I3
      100% cov
    • Alignment Length
      265 aa
    • CIGAR string
      2MNMN2MNMN2MNM2N5MNMNMN2MN2MN2MNM2N4MNMNM3N4M2NM8NM4NMNMNM2NI7N2M6N3MN4MN12MN2M2N7MNMN2MN8MN13M2N2MN2M4N2M3N14MNM2NMNM2NM2N6MNM2N2MN3M4N3MN2MN3M2N6MN4MN3MN3MN4MN8MN2MNM1H mismatches: 97 - insertions: 1 - deletions: 0
  • Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    • Public DB hit
      GI:81945901
      Q8B0H3
    • Hit length
      265 aa
    • E Value
      7.44E-95
    • BLAST Score
      352.1 bits
    • Similarity
      81.13%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      Q8B0H3
      100% cov
    • Alignment Length
      265 aa
  • Vesicular stomatitis Indiana virus

    Vesicular stomatitis Indiana virus

    • Public DB hit
      GI:75242
      MNVN
      1 of 3 hits reported for Vesicular stomatitis Indiana virus.
    • Hit length
      265 aa
    • E Value
      1.89E-94
    • BLAST Score
      350.5 bits
    • Similarity
      81.89%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      MNVN
      100% cov
    • Alignment Length
      265 aa
  • Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    • Public DB hit
      GI:218457794
      ACK77581
    • Hit length
      265 aa
    • E Value
      2.64E-94
    • BLAST Score
      350.1 bits
    • Similarity
      81.51%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      ACK77581
      100% cov
    • Alignment Length
      265 aa
  • Vesicular stomatitis Indiana virus strain Mudd-Summers

    Vesicular stomatitis Indiana virus strain Mudd-Summers

    • Public DB hit
      GI:133695
      P04880
    • Hit length
      265 aa
    • E Value
      8.09E-94
    • BLAST Score
      348.6 bits
    • Similarity
      81.89%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      P04880
      100% cov
    • Alignment Length
      265 aa
  • Cocal virus

    Cocal virus

    • Public DB hit
      GI:171673112
      ACB47435
    • Hit length
      264 aa
    • E Value
      1.38E-93
    • BLAST Score
      347.8 bits
    • Similarity
      78.95%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      ACB47435
      99.62% cov
    • Alignment Length
      266 aa
  • Vesicular stomatitis Indiana virus strain Glasgow

    Vesicular stomatitis Indiana virus strain Glasgow

    • Public DB hit
      GI:133694
      P04879
    • Hit length
      265 aa
    • E Value
      3.7E-88
    • BLAST Score
      329.7 bits
    • Similarity
      82.26%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      P04879
      100% cov
    • Alignment Length
      265 aa
  • Vesicular stomatitis Alagoas virus

    Vesicular stomatitis Alagoas virus

    • Public DB hit
      GI:171673118
      ACB47440
    • Hit length
      260 aa
    • E Value
      1.96E-85
    • BLAST Score
      320.5 bits
    • Similarity
      77.65%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 3
      99.62% cov
      ACB47440
      100% cov
    • Alignment Length
      264 aa
Occurrence
35 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
229
Type
peptide
Locations
Detailed Description, Summary

Declared organism:
Maraba Virus M

Determined organism:
  • Maraba virus

    Maraba virus

    • Public DB hit
      GI:336309161
      AEI52257
    • Hit length
      229 aa
    • E Value
      1.55E-132
    • BLAST Score
      476.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AEI52257
      100% cov
    • Alignment Length
      229 aa
    • CIGAR string
      229M mismatches: 0 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Alagoas virus

    Vesicular stomatitis Alagoas virus

    • Public DB hit
      GI:171673119
      ACB47441
    • Hit length
      229 aa
    • E Value
      6.78E-103
    • BLAST Score
      378.3 bits
    • Similarity
      91.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACB47441
      100% cov
    • Alignment Length
      229 aa
    • CIGAR string
      9MNM3N7MN7M3N2M2N4M3NMN2MN7MN11MNMN2MN2MN3M3NM3N11MN8MN2M2N16MN5MN28MN3MN3MNMN2MNMN4M2N7M2NMN2M4N2MN2MN4MNMN4MN10M mismatches: 52 - insertions: 0 - deletions: 0
  • Cocal virus

    Cocal virus

    • Public DB hit
      GI:171673113
      ACB47436
    • Hit length
      229 aa
    • E Value
      6.73E-101
    • BLAST Score
      371.7 bits
    • Similarity
      92.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACB47436
      100% cov
    • Alignment Length
      229 aa
    • CIGAR string
      9MNMN9MN8M2N2M2N4M3NMN4MN5M2N3MN6MNMN2MN2MN3MN4MN21MN3M2N2MNMN10MN5MN12MN15MN3MN3MNMNM2N10M2N6MN2M5N11MN4MN7MN2M mismatches: 46 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus (strain 85CLB South America)

    Vesicular stomatitis Indiana virus (strain 85CLB South America)

    • Public DB hit
      GI:81945905
      Q8B0H7
    • Hit length
      229 aa
    • E Value
      4.4E-99
    • BLAST Score
      365.5 bits
    • Similarity
      92.75%
    • Coverage
      90.39%
    • Alignment (schematic)

      SEQ ID NO 4
      90.39% cov
      Q8B0H7
      90.39% cov
    • Alignment Length
      207 aa
  • Vesicular stomatitis Indiana virus

    Vesicular stomatitis Indiana virus

    • Public DB hit
      GI:144678903
      ABP01782
      1 of 5 hits reported for Vesicular stomatitis Indiana virus.
    • Hit length
      229 aa
    • E Value
      6.51E-99
    • BLAST Score
      364.8 bits
    • Similarity
      92.75%
    • Coverage
      90.39%
    • Alignment (schematic)

      SEQ ID NO 4
      90.39% cov
      ABP01782
      90.39% cov
    • Alignment Length
      207 aa
  • Vesicular stomatitis Indiana virus (strain 98COE North America)

    Vesicular stomatitis Indiana virus (strain 98COE North America)

    • Public DB hit
      GI:81945910
      Q8B0I2
    • Hit length
      229 aa
    • E Value
      1.66E-98
    • BLAST Score
      363.6 bits
    • Similarity
      92.75%
    • Coverage
      90.39%
    • Alignment (schematic)

      SEQ ID NO 4
      90.39% cov
      Q8B0I2
      90.39% cov
    • Alignment Length
      207 aa
  • Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    • Public DB hit
      GI:81945900
      Q8B0H2
    • Hit length
      229 aa
    • E Value
      2.58E-98
    • BLAST Score
      362.8 bits
    • Similarity
      92.75%
    • Coverage
      90.39%
    • Alignment (schematic)

      SEQ ID NO 4
      90.39% cov
      Q8B0H2
      90.39% cov
    • Alignment Length
      207 aa
  • Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    • Public DB hit
      GI:218457795
      ACK77582
    • Hit length
      229 aa
    • E Value
      5.2E-98
    • BLAST Score
      362.1 bits
    • Similarity
      92.27%
    • Coverage
      90.39%
    • Alignment (schematic)

      SEQ ID NO 4
      90.39% cov
      ACK77582
      90.39% cov
    • Alignment Length
      207 aa
  • Vesicular stomatitis virus

    Vesicular stomatitis virus

    • Public DB hit
      GI:225445
      1303310A
      1 of 2 hits reported for Vesicular stomatitis virus.
    • Hit length
      237 aa
    • E Value
      4.26E-97
    • BLAST Score
      359 bits
    • Similarity
      91.79%
    • Coverage
      90.39%
    • Alignment (schematic)

      SEQ ID NO 4
      90.39% cov
      1303310A
      87.34% cov
    • Alignment Length
      207 aa
  • Vesicular stomatitis Indiana virus strain Glasgow

    Vesicular stomatitis Indiana virus strain Glasgow

    • Public DB hit
      GI:138759
      P04876
    • Hit length
      237 aa
    • E Value
      5.33E-96
    • BLAST Score
      355.1 bits
    • Similarity
      91.3%
    • Coverage
      90.39%
    • Alignment (schematic)

      SEQ ID NO 4
      90.39% cov
      P04876
      87.34% cov
    • Alignment Length
      207 aa
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
512
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Maraba Virus G

Determined organism:
  • Maraba virus

    Maraba virus

    • Public DB hit
      GI:336309158
      AEI52254
    • Hit length
      512 aa
    • E Value
      0E0
    • BLAST Score
      1,068.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AEI52254
      100% cov
    • Alignment Length
      512 aa
    • CIGAR string
      224MN287M mismatches: 1 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus

    Vesicular stomatitis Indiana virus

    • Public DB hit
      GI:335897
      AAA48377
      1 of 18 hits reported for Vesicular stomatitis Indiana virus.
    • Hit length
      511 aa
    • E Value
      0E0
    • BLAST Score
      876.7 bits
    • Similarity
      88.24%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 5
      99.61% cov
      AAA48377
      99.8% cov
    • Alignment Length
      510 aa
    • CIGAR string
      M2NM5NM2NM3N8MN10MN9MN4MNMNM2NMN2MN16MN20MNM2NM2N4MN8MNMN18MNMN2MN14MN3M3N4M3NMN6MN2MN3M2N3MN3MNMN9M3N4M2N11MNMN8M2N2MN9M2N5MN3MN4MN36MNMN2MN14MN23M2N2MNMN4MN10MN2MN15M2NMN17MN2MN8M2N23MN8MN3M2N4MN4M3NM4NM7NMNM2NM2N3MNMN2MN3M2H mismatches: 108 - insertions: 0 - deletions: 0
  • Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    • Public DB hit
      GI:218457797
      ACK77584
    • Hit length
      750 aa
    • E Value
      0E0
    • BLAST Score
      874.8 bits
    • Similarity
      88.04%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 5
      99.61% cov
      ACK77584
      68% cov
    • Alignment Length
      510 aa
  • Cloning vector pHCMV-VSV-G

    Cloning vector pHCMV-VSV-G

    • Public DB hit
      GI:15072764
      CAC47944
    • Hit length
      511 aa
    • E Value
      0E0
    • BLAST Score
      870.9 bits
    • Similarity
      88.04%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 5
      99.61% cov
      CAC47944
      99.8% cov
    • Alignment Length
      510 aa
  • Vesicular stomatitis Indiana virus (strain 85CLB South America)

    Vesicular stomatitis Indiana virus (strain 85CLB South America)

    • Public DB hit
      GI:81945904
      Q8B0H6
    • Hit length
      511 aa
    • E Value
      0E0
    • BLAST Score
      870.2 bits
    • Similarity
      87.65%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 5
      99.61% cov
      Q8B0H6
      99.8% cov
    • Alignment Length
      510 aa
  • Vesicular stomatitis Indiana virus strain Orsay

    Vesicular stomatitis Indiana virus strain Orsay

    • Public DB hit
      GI:138310
      P04884
    • Hit length
      511 aa
    • E Value
      0E0
    • BLAST Score
      869 bits
    • Similarity
      87.45%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 5
      99.61% cov
      P04884
      99.8% cov
    • Alignment Length
      510 aa
  • Vesicular stomatitis Indiana virus (strain 98COE North America)

    Vesicular stomatitis Indiana virus (strain 98COE North America)

    • Public DB hit
      GI:81945909
      Q8B0I1
    • Hit length
      511 aa
    • E Value
      0E0
    • BLAST Score
      865.1 bits
    • Similarity
      88.04%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 5
      99.61% cov
      Q8B0I1
      99.8% cov
    • Alignment Length
      510 aa
Occurrence
38 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
2,109
Type
peptide
Locations
Detailed Description

Declared organism:
Maraba Virus L

Determined organism:
  • Maraba virus

    Maraba virus

    • Public DB hit
      GI:336309157
      AEI52253
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      4,381.2 bits
    • Similarity
      99.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AEI52253
      100% cov
    • Alignment Length
      2,109 aa
    • CIGAR string
      80MN2028M mismatches: 1 - insertions: 0 - deletions: 0
  • Cocal virus

    Cocal virus

    • Public DB hit
      GI:171673115
      ACB47438
    • Hit length
      2,108 aa
    • E Value
      0E0
    • BLAST Score
      3,558.1 bits
    • Similarity
      88.9%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 6
      99.95% cov
      ACB47438
      99.95% cov
    • Alignment Length
      2,108 aa
    • CIGAR string
      2MN5M3NMN3MN2M3N5M2N22MN6MN4MN3MN3MN8MN2MNM2NMN3MNMNMN5MN7MN2MN6M2N8MN4MN3MNMN3M4NMN2MNMN14MN4MN3MN2MN5M2NM4NM2N5MN4M2N6MNMNMNMN2MN7MN15MN3M2NMN3MNM2NMN6M2NM3NM2N6M2N7MNMN2M2N6MN5MN2M2N2MN2MNMN2MNM3NM2N3M3N2MN16MN2MN6MN2MNMNMN2M2N2M2N23M4NM2N3MN2MN13MN2MN2MN3MN3MN4MN23M2NM2N4MN7MNMN2MNMN3M2N2M2N2MNMN14MN47MN38MN9MN23MNMN2MNMNMNM3N3MN27MN26MNMN2M2N2MN7MN2MN3MN2MN4MN17MN53M2N21MN3MN2M2N6MN4MN13MN8MN9MN5MN3MN2MN5M2N4MN2MN36MN4MN5MN12MN8MN15MN22MN9M2N6MN6M2N3M3NMN3M2N2MN2MN5MN14MNMN6MN2M2N2M2N7MN6MN3MN41M2NMN3M3N17MN23MN20MN13MNMN6M5N11MN3MNMN5M2N3MN8MN18MN4M2NMNMN29MN7MN28MN12MNMN16MN4MN36MNMN7MN18M2N2M2N3M2N3MNMN16MN12MN4MN11M2NM5N3MNM2NM2N3M4NM2N2M2N3MNM2N3MN4MN15MNM9N20MN2MN11MNM2N10MN8MN5MN4M2N4M3N5M2N2MNMN2M2N3MN8M2N2MN2MN2M4NM2NM3NMN9M6NMN2M2N2MNM2NMN3M2N16M2N9M2NMNMNMNM2N2M5N2MN3M5NMNMN3MN16MN6MNMN3M2NM2NM2N3MN12MN7M3N6MN2M2N6MN3MN2MN3M2N3M2NMN3MN6M5N2M3NMNMNMNMN5MN4MN2MN6M2N6M2NM2N2M3NM3NM3NMN2MN2MNMD2N3M2N2M2NMNMN6M2N2M4NMN3M1H mismatches: 442 - insertions: 0 - deletions: 1
  • Vesicular stomatitis Indiana virus (strain 85CLB South America)

    Vesicular stomatitis Indiana virus (strain 85CLB South America)

    • Public DB hit
      GI:81945903
      Q8B0H5
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      3,538.4 bits
    • Similarity
      89.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      Q8B0H5
      100% cov
    • Alignment Length
      2,109 aa
    • CIGAR string
      MNMN3M2NM5N3M2NMN5M3N21MN2MNMNM3N2MN3MNMNMN8MN2MN2M2NMN4MNMN5MN6MN10M2N2MN10M5NM2NM4N3M3NMN14MNMN6MN3M2N4MN2M3NM2NMN9MNM3N2MNMN3M3N8MN10MN3M2NMN6MN3M2NMN8MN4M3N6MN7MNMN3M2N3MNMN5MN2M2N2MN2MN3MN2MNM2NMN3M3N19MN2MN6MN4MNMN2M2N2M2N10MN4MN6M2NM2NM2N6MN13MN2MN2MN32MN3M2NM2N4MN7MN4MN6MN3MN2MN4MN11MN47MNMN6M2N2MN18MN6MN9MN25M2NMN3M2NM2N3MN2MN52M2N2M2N2MN7MN2MN3MN2MN22MN50MN2MN22MN6MN7MN4MN22MN9MN2MN3MN4M2N3M2N9MN2MN2MN30MN4MN4M3N6MN4MN8MN15MN22MN9M2N6MN11M2N5MNMN2MN2M2N4MN14M4N5M2N2MN2M2N7MN6MN46MN3MN2MN3MN2M2N6MNMN42MN3MN2MN17MNMNM3N15MNMN6MNMNMN5MN2M2N9MNMN5MN2MNM2NMNMN13MN8MN2MN3MN6M3N9MN39MNMN7MN2MNMN4MN29MN3MNM2N2MN16MN3MN3MN4M2N2M2N29MN2MN17M7N4M2N2MNMN2MN4M2NM2N3MNMN4MN4MN2MN16M7N22M2N11MN2MN16M2N7MN4M2N3M4N9MN4M2N3MN7M2N3MN2MNM3NMNMN2M3N10MNM5NM2N2MN2MNMN6MNMN7MNMNM2N2M4N3M2N2MNM4NM3N3M5N2MN5M5NMN3MN16MN12MN2M2NM2NMNMNMN3M3N4MN4M2NMNM2N5M2N2MNMN2MNMN3MN4MNM2N2MNMNM2NM2N6M2NM2NMNM2NMNMNMNMNMN3MNMN5MN6M2N5M6NMNMN2MNMNM3NMN4M2NM3N4MNMNMN3M2NMN3M2N5MN5MN mismatches: 457 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus

    Vesicular stomatitis Indiana virus

    • Public DB hit
      GI:144678905
      ABP01784
      1 of 5 hits reported for Vesicular stomatitis Indiana virus.
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      3,534.2 bits
    • Similarity
      89.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ABP01784
      100% cov
    • Alignment Length
      2,109 aa
  • Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    • Public DB hit
      GI:218457798
      ACK77585
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      3,533 bits
    • Similarity
      89.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ACK77585
      100% cov
    • Alignment Length
      2,109 aa
  • Vesicular stomatitis Indiana virus strain Mudd-Summers

    Vesicular stomatitis Indiana virus strain Mudd-Summers

    • Public DB hit
      GI:81965433
      Q98776
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      3,533 bits
    • Similarity
      89.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      Q98776
      100% cov
    • Alignment Length
      2,109 aa
  • Vesicular stomatitis Indiana virus (strain 98COE North America)

    Vesicular stomatitis Indiana virus (strain 98COE North America)

    • Public DB hit
      GI:81945908
      Q8B0I0
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      3,530.7 bits
    • Similarity
      89.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      Q8B0I0
      100% cov
    • Alignment Length
      2,109 aa
  • Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    • Public DB hit
      GI:81945898
      Q8B0H0
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      3,524.9 bits
    • Similarity
      89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      Q8B0H0
      100% cov
    • Alignment Length
      2,109 aa
  • Vesicular stomatitis Indiana virus strain San Juan

    Vesicular stomatitis Indiana virus strain San Juan

    • Public DB hit
      GI:1173173
      P03523
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      3,509.5 bits
    • Similarity
      88.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      P03523
      100% cov
    • Alignment Length
      2,109 aa
  • Vesicular stomatitis Alagoas virus

    Vesicular stomatitis Alagoas virus

    • Public DB hit
      GI:171673121
      ACB47443
    • Hit length
      2,108 aa
    • E Value
      0E0
    • BLAST Score
      3,446 bits
    • Similarity
      88.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      ACB47443
      100% cov
    • Alignment Length
      2,109 aa
  • Vesicular stomatitis virus (serotype New Jersey / strain Ogden)

    Vesicular stomatitis virus (serotype New Jersey / strain Ogden)

    • Public DB hit
      GI:147744573
      P16379
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      2,981.8 bits
    • Similarity
      80.54%
    • Coverage
      99.76%
    • Alignment (schematic)

      SEQ ID NO 6
      99.76% cov
      P16379
      99.91% cov
    • Alignment Length
      2,107 aa
  • Vesicular stomatitis virus

    Vesicular stomatitis virus

    • Public DB hit
      GI:27447193
      AAL73075
      1 of 2 hits reported for Vesicular stomatitis virus.
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      2,981.4 bits
    • Similarity
      80.22%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 6
      99.95% cov
      AAL73075
      99.95% cov
    • Alignment Length
      2,108 aa
  • Vesicular stomatitis virus (serotype New Jersey / strain Hazelhurst)

    Vesicular stomatitis virus (serotype New Jersey / strain Hazelhurst)

    • Public DB hit
      GI:133616
      P13615
    • Hit length
      2,109 aa
    • E Value
      0E0
    • BLAST Score
      2,922.9 bits
    • Similarity
      79.79%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 6
      99.95% cov
      P13615
      99.95% cov
    • Alignment Length
      2,108 aa
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
10,716
Type
nucleotide
Locations
Detailed Description

Declared organism:
Carajas virus

Determined organism:
  • Vesicular stomatitis virus

    Vesicular stomatitis virus

    • Public DB hit
      GI:27447192
      AY074803
      1 of 2 hits reported for Vesicular stomatitis virus.
    • Hit length
      6,330 bp
    • E Value
      0E0
    • BLAST Score
      918.9 bits
    • Similarity
      72.09%
    • Coverage
      34.68%
    • Alignment (schematic)

      SEQ ID NO 7
      34.68% cov
      AY074803
      58.7% cov
    • Alignment Length
      3,844 bp
  • Pike fry rhabdovirus

    Pike fry rhabdovirus

    • Public DB hit
      GI:227344934
      FJ872827
    • Hit length
      11,097 bp
    • E Value
      2.23E-85
    • BLAST Score
      329.8 bits
    • Similarity
      73.8%
    • Coverage
      8.86%
    • Alignment (schematic)

      SEQ ID NO 7
      8.86% cov
      FJ872827
      8.55% cov
    • Alignment Length
      981 bp
    • CIGAR string
      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 mismatches: 193 - insertions: 32 - deletions: 32
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
442
Type
peptide
Locations
Detailed Description

Declared organism:
Carajas Virus N

Determined organism:
  • Vesicular stomatitis Indiana virus (strain 85CLB South America)

    Vesicular stomatitis Indiana virus (strain 85CLB South America)

    • Public DB hit
      GI:81945907
      Q8B0H9
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      641.3 bits
    • Similarity
      87.28%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      Q8B0H9
      93.13% cov
    • Alignment Length
      393 aa
    • CIGAR string
      M3N2M2N2MN3MN17M2N2MN7MNMNM2N2M2N6MN2MN10MN5M3NM2N2MN2MNMN3MNM2NMN2MN4M2NM4N3M2NM2NM3N6MN11M2N8MN2M2N3M5NMNMN4MNMN9MN18MN2MN20MN2M2N5MN4MN8M2N3MN6MN7MN6MN10MN7MN9MN19MN9M2N3M2N2MN2M2NMNMN4MN4MN2MN2MN8M4N4M49H mismatches: 95 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus

    Vesicular stomatitis Indiana virus

    • Public DB hit
      GI:9627230
      NP_041712
      1 of 6 hits reported for Vesicular stomatitis Indiana virus.
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      641 bits
    • Similarity
      87.53%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      NP_041712
      93.13% cov
    • Alignment Length
      393 aa
    • CIGAR string
      M3N2M2N2MN3MN17M2N2MN7MNMNM2N2M2N6MN2MN10MN5M3NM2N2MN2MNMN3MNM2NMN2MN3M3NM4N3M2NM2NM3N6MN11M2N8MN2M2N3M5NMNMN4MNMN9MN18MN2MN20MN2M2N5MN4MN8M2N3MN6MN7MN6MN10MN7MN9MN19MN9M2N3M2N2MN2M2NMNMN4MN4MN2MN2MN8M4N4M49H mismatches: 96 - insertions: 0 - deletions: 0
  • Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    Vesicular stomatitis Indiana virus (strain 94GUB Central America)

    • Public DB hit
      GI:81945902
      Q8B0H4
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      640.6 bits
    • Similarity
      87.53%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      Q8B0H4
      93.13% cov
    • Alignment Length
      393 aa
    • CIGAR string
      M3N2M2N2MN3MN18MN2MN7MNMNM2N2M2N6MN2MN10MN5M3NM2N2MN2MNMN3MNM2NMN2MN3M3NM4N3M2NM2NM3N6MN11M2N8MN2M2N3M5NMNMN4MNMN9MN18MN2MN20MN2M2N5MN4MN8M2N3MN6MN7MN6MN10MN7MN9MN19MN9M2N3M2N2MN2M2NM3N4MN4MN2MN2MN8M4N4M49H mismatches: 96 - insertions: 0 - deletions: 0
  • Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP

    • Public DB hit
      GI:218457793
      ACK77580
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      640.2 bits
    • Similarity
      87.53%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      ACK77580
      93.13% cov
    • Alignment Length
      393 aa
  • Vesicular stomatitis Indiana virus strain Glasgow

    Vesicular stomatitis Indiana virus strain Glasgow

    • Public DB hit
      GI:127942
      P11212
    • Hit length
      422 aa
    • E Value
      0E0
    • BLAST Score
      639.8 bits
    • Similarity
      87.53%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      P11212
      93.13% cov
    • Alignment Length
      393 aa
  • Vesicular stomatitis Alagoas virus

    Vesicular stomatitis Alagoas virus

    • Public DB hit
      GI:171673117
      ACB47439
    • Hit length
      422 aa
    • E Value
      5.55E-180
    • BLAST Score
      636 bits
    • Similarity
      87.28%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      ACB47439
      93.13% cov
    • Alignment Length
      393 aa
  • Cocal virus

    Cocal virus

    • Public DB hit
      GI:171673111
      ACB47434
    • Hit length
      422 aa
    • E Value
      5.64E-180
    • BLAST Score
      636 bits
    • Similarity
      87.53%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      ACB47434
      93.13% cov
    • Alignment Length
      393 aa
  • Maraba virus

    Maraba virus

    • Public DB hit
      GI:336309159
      AEI52255
    • Hit length
      422 aa
    • E Value
      1.51E-179
    • BLAST Score
      634.4 bits
    • Similarity
      85.29%
    • Coverage
      92.31%
    • Alignment (schematic)

      SEQ ID NO 8
      92.31% cov
      AEI52255
      96.68% cov
    • Alignment Length
      408 aa
  • Vesicular stomatitis virus

    Vesicular stomatitis virus

    • Public DB hit
      GI:336064
      AAA48460
      1 of 10 hits reported for Vesicular stomatitis virus.
    • Hit length
      422 aa
    • E Value
      1.27E-176
    • BLAST Score
      624.8 bits
    • Similarity
      86.01%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      AAA48460
      93.13% cov
    • Alignment Length
      393 aa
  • Vesicular stomatitis virus (serotype New Jersey / strain Ogden)

    Vesicular stomatitis virus (serotype New Jersey / strain Ogden)

    • Public DB hit
      GI:127943
      P04881
    • Hit length
      422 aa
    • E Value
      1.24E-174
    • BLAST Score
      618.2 bits
    • Similarity
      85.5%
    • Coverage
      88.91%
    • Alignment (schematic)

      SEQ ID NO 8
      88.91% cov
      P04881
      93.13% cov
    • Alignment Length
      393 aa
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
261
Type
peptide
Locations
Detailed Description

Declared organism:
Carajas Virus P

Determined organism:
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
228
Type
peptide
Locations
Detailed Description

Declared organism:
Carajas Virus M

Determined organism:
Occurrence
32 times in PatSeqDB
Tools
PatSeq Finder

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