Bank Vole Prion Protein As A Broad-spectrum Substrate For Rt-quic-based Detection And Discrimination Of Prion Strains

Data obtained from: EMBL-EBI Pat WIPO-PCT EPO Sequence Listings
26 sequences found in this patent (in total)

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Download sequences in fasta format: 26 peptides

Displaying 1 - 10 of 26 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
208
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Myodes glareolus (Bank vole)
Determined organism
Occurrence
Tools
SEQ ID NO
2
Length
231
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mesocricetus auratus (golden hamster)
Determined organism
Occurrence
Tools
SEQ ID NO
3
Length
209
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:290965849
      ADD71057
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      246 aa
    • E Value
      1.01E-117
    • BLAST Score
      427.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ADD71057
      84.96% cov
    • Alignment Length
      209 aa
    • CIGAR string
      180MN28M mismatches: 1 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:60834334
      AAX37089
      1 of 2 hits reported for synthetic construct.
    • Hit length
      254 aa
    • E Value
      1.96E-117
    • BLAST Score
      426 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAX37089
      82.28% cov
    • Alignment Length
      209 aa
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:563209
      AAA68633
    • Hit length
      253 aa
    • E Value
      2.62E-117
    • BLAST Score
      425.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAA68633
      82.61% cov
    • Alignment Length
      209 aa
  • Gorilla gorilla gorilla

    Gorilla gorilla gorilla

    • Public DB hit
      GI:730390
      P40252
    • Hit length
      253 aa
    • E Value
      2.69E-117
    • BLAST Score
      425.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      P40252
      82.61% cov
    • Alignment Length
      209 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:57114055
      NP_001009093
    • Hit length
      253 aa
    • E Value
      8.37E-117
    • BLAST Score
      424.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_001009093
      82.61% cov
    • Alignment Length
      209 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197102382
      NP_001124544
    • Hit length
      253 aa
    • E Value
      9.02E-116
    • BLAST Score
      420.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_001124544
      82.61% cov
    • Alignment Length
      209 aa
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
4
Length
209
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:15277486
      AAH12844
      1 of 18 hits reported for Homo sapiens.
    • Hit length
      253 aa
    • E Value
      1.23E-117
    • BLAST Score
      426.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAH12844
      82.61% cov
    • Alignment Length
      209 aa
    • CIGAR string
      209M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:60834334
      AAX37089
      1 of 2 hits reported for synthetic construct.
    • Hit length
      254 aa
    • E Value
      2.56E-117
    • BLAST Score
      425.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAX37089
      82.28% cov
    • Alignment Length
      209 aa
    • CIGAR string
      106MN102M mismatches: 1 - insertions: 0 - deletions: 0
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:563209
      AAA68633
    • Hit length
      253 aa
    • E Value
      8.44E-117
    • BLAST Score
      424.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAA68633
      82.61% cov
    • Alignment Length
      209 aa
  • Gorilla gorilla gorilla

    Gorilla gorilla gorilla

    • Public DB hit
      GI:730390
      P40252
    • Hit length
      253 aa
    • E Value
      8.44E-117
    • BLAST Score
      424.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      P40252
      82.61% cov
    • Alignment Length
      209 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:57114055
      NP_001009093
    • Hit length
      253 aa
    • E Value
      3E-116
    • BLAST Score
      422.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001009093
      82.61% cov
    • Alignment Length
      209 aa
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
5
Length
209
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Artificial
Determined organism
Occurrence
Tools
SEQ ID NO
6
Length
209
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mesocricetus auratus (golden hamster)
Determined organism
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
7
Length
141
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Mesocricetus auratus (golden hamster)
Determined organism
Occurrence
Tools
SEQ ID NO
8
Length
226
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Myodes glareolus (Bank vole)
Determined organism
Occurrence
Tools
SEQ ID NO
9
Length
210
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Ovis aries (sheep)
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
10
Length
218
Sequence Type
peptide
Locations
Claims, Fulltext
Declared organism
Bos taurus (cattle)
Determined organism
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:130910
      P10279
      1 of 14 hits reported for Bos taurus.
    • Hit length
      264 aa
    • E Value
      1.08E-121
    • BLAST Score
      440.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      P10279
      82.58% cov
    • Alignment Length
      218 aa
    • CIGAR string
      218M mismatches: 0 - insertions: 0 - deletions: 0
  • Bison bison

    Bison bison

    • Public DB hit
      GI:54125485
      AAV30502
    • Hit length
      264 aa
    • E Value
      1.1E-121
    • BLAST Score
      440.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAV30502
      82.58% cov
    • Alignment Length
      218 aa
    • CIGAR string
      218M mismatches: 0 - insertions: 0 - deletions: 0
  • Bos grunniens

    Bos grunniens

    • Public DB hit
      GI:34334030
      AAQ64642
    • Hit length
      264 aa
    • E Value
      2.82E-121
    • BLAST Score
      439.1 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAQ64642
      82.58% cov
    • Alignment Length
      218 aa
  • Bos frontalis

    Bos frontalis

    • Public DB hit
      GI:289466130
      ADC94832
      1 of 2 hits reported for Bos frontalis.
    • Hit length
      264 aa
    • E Value
      2.85E-121
    • BLAST Score
      439.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ADC94832
      82.58% cov
    • Alignment Length
      218 aa
  • Bos javanicus

    Bos javanicus

    • Public DB hit
      GI:54125477
      AAV30498
      1 of 2 hits reported for Bos javanicus.
    • Hit length
      264 aa
    • E Value
      3.02E-121
    • BLAST Score
      439.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAV30498
      82.58% cov
    • Alignment Length
      218 aa
  • Bos indicus

    Bos indicus

    • Public DB hit
      GI:62900678
      Q5UJI7
    • Hit length
      264 aa
    • E Value
      4.18E-121
    • BLAST Score
      438.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      Q5UJI7
      82.58% cov
    • Alignment Length
      218 aa
  • Bos indicus x Bos taurus

    Bos indicus x Bos taurus

    • Public DB hit
      GI:197114556
      ACH43175
    • Hit length
      264 aa
    • E Value
      7.68E-121
    • BLAST Score
      437.6 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ACH43175
      82.58% cov
    • Alignment Length
      218 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:75043390
      Q6EH52
    • Hit length
      264 aa
    • E Value
      1.13E-120
    • BLAST Score
      437.2 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      Q6EH52
      82.58% cov
    • Alignment Length
      218 aa
  • Bubalus bubalis

    Bubalus bubalis

    • Public DB hit
      GI:54125509
      AAV30514
    • Hit length
      264 aa
    • E Value
      3.78E-120
    • BLAST Score
      435.3 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAV30514
      82.58% cov
    • Alignment Length
      218 aa
Occurrence
12 times in PatSeqDB
Tools

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