Nucleic Acids Encoding Hedgehog Proteins

  • Published: Dec 26, 2000
  • Earliest Priority: Dec 30 1993
  • Family: 4
  • Cited Works: 94
  • Cited by: 57
  • Cites: 0
  • Sequences: 62
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat USPTO Fulltext NCBI GenBank DDBJ Pat
62 sequences found in this patent (in total)

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Displaying 1 - 10 of 62 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,277
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:45382238
      NM_204821
      1 of 2 hits reported for Gallus gallus.
    • Hit length
      1,535 bp
    • E Value
      0E0
    • BLAST Score
      2,359.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_204821
      83.19% cov
    • Alignment Length
      1,277 bp
    • CIGAR string
      1277M mismatches: 0 - insertions: 0 - deletions: 0
  • Taeniopygia guttata

    Taeniopygia guttata

    • Public DB hit
      GI:224044656
      XM_002190708
    • Hit length
      1,278 bp
    • E Value
      0E0
    • BLAST Score
      1,615.1 bits
    • Similarity
      89.82%
    • Coverage
      98.98%
    • Alignment (schematic)

      SEQ ID NO 1
      98.98% cov
      XM_002190708
      98.9% cov
    • Alignment Length
      1,277 bp
    • CIGAR string
      4MN104M2N6MN13MN197MN2MN32MN2MN11MN20MN5MN11MN17MN20MN5MN20MN14MN11MN14MN56MN2MN5MN2MN2MN20MN5MN6MNMN2MN2MN23MN5MN3MNMN7MD2MIMN3MN4MN5MN2MN8MN23MI2MD4MN6MDMI47MN8MN8MN5MN14MN8M2N4MDMND3MD2M2N3MN4MN6MN9M2N4M2N3MN5MN2MN4MDMI19MN2MN13MNMN2MN3MN4MN2M2N16MN2MN8MN2MN27MN4MN3MN7MN26MN5MN2MN11MN2MN6MN2MD3MI3MNIMD16MI3MN2IM2NMI3MN2D4MNDMI2MNMIMNIMD2MNM2N2MNMN8MN8MN42MNMN5MN12MN3M13H mismatches: 104 - insertions: 13 - deletions: 13
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:161484664
      NM_009170
      1 of 5 hits reported for Mus musculus.
    • Hit length
      2,727 bp
    • E Value
      0E0
    • BLAST Score
      898.6 bits
    • Similarity
      82.27%
    • Coverage
      83.32%
    • Alignment (schematic)

      SEQ ID NO 1
      83.32% cov
      NM_009170
      38.91% cov
    • Alignment Length
      1,083 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332870270
      XM_001147185
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      859.8 bits
    • Similarity
      86.51%
    • Coverage
      61.71%
    • Alignment (schematic)

      SEQ ID NO 1
      61.71% cov
      XM_001147185
      50% cov
    • Alignment Length
      793 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332263734
      XM_003280860
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      854.3 bits
    • Similarity
      86.36%
    • Coverage
      61.71%
    • Alignment (schematic)

      SEQ ID NO 1
      61.71% cov
      XM_003280860
      50% cov
    • Alignment Length
      792 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:21071042
      NM_000193
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      1,576 bp
    • E Value
      0E0
    • BLAST Score
      854.3 bits
    • Similarity
      86.38%
    • Coverage
      61.71%
    • Alignment (schematic)

      SEQ ID NO 1
      61.71% cov
      NM_000193
      49.81% cov
    • Alignment Length
      793 bp
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:8394266
      NM_017221
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      1,715 bp
    • E Value
      0E0
    • BLAST Score
      854.3 bits
    • Similarity
      81.67%
    • Coverage
      82.62%
    • Alignment (schematic)

      SEQ ID NO 1
      82.62% cov
      NM_017221
      61.34% cov
    • Alignment Length
      1,075 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:208967465
      AB464234
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,403 bp
    • E Value
      0E0
    • BLAST Score
      854.3 bits
    • Similarity
      86.38%
    • Coverage
      61.71%
    • Alignment (schematic)

      SEQ ID NO 1
      61.71% cov
      AB464234
      55.95% cov
    • Alignment Length
      793 bp
Occurrence
112 times in PatSeqDB
Tools
SEQ ID NO
2
Length
1,190
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:164565413
      NM_007857
      1 of 4 hits reported for Mus musculus.
    • Hit length
      2,381 bp
    • E Value
      0E0
    • BLAST Score
      2,198.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NM_007857
      49.98% cov
    • Alignment Length
      1,190 bp
    • CIGAR string
      1190M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:162319587
      BC156905
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,252 bp
    • E Value
      0E0
    • BLAST Score
      2,196.8 bits
    • Similarity
      100%
    • Coverage
      99.92%
    • Alignment (schematic)

      SEQ ID NO 2
      99.92% cov
      BC156905
      94.97% cov
    • Alignment Length
      1,189 bp
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:274327781
      NM_053367
    • Hit length
      2,479 bp
    • E Value
      0E0
    • BLAST Score
      1,966 bits
    • Similarity
      96.55%
    • Coverage
      99.75%
    • Alignment (schematic)

      SEQ ID NO 2
      99.75% cov
      NM_053367
      47.88% cov
    • Alignment Length
      1,187 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211563
      XM_002752427
    • Hit length
      1,456 bp
    • E Value
      0E0
    • BLAST Score
      1,461.8 bits
    • Similarity
      88.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_002752427
      81.73% cov
    • Alignment Length
      1,196 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:23346635
      NM_021044
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      1,971 bp
    • E Value
      0E0
    • BLAST Score
      1,434.1 bits
    • Similarity
      88.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NM_021044
      60.38% cov
    • Alignment Length
      1,196 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:297474550
      XM_002687306
      1 of 4 hits reported for Bos taurus.
    • Hit length
      1,191 bp
    • E Value
      0E0
    • BLAST Score
      1,419.3 bits
    • Similarity
      88.42%
    • Coverage
      99.08%
    • Alignment (schematic)

      SEQ ID NO 2
      99.08% cov
      XM_002687306
      98.99% cov
    • Alignment Length
      1,183 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332206331
      XM_003252196
    • Hit length
      2,352 bp
    • E Value
      0E0
    • BLAST Score
      1,417.5 bits
    • Similarity
      88.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_003252196
      50.6% cov
    • Alignment Length
      1,197 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297691734
      XM_002823183
    • Hit length
      1,844 bp
    • E Value
      0E0
    • BLAST Score
      1,412 bits
    • Similarity
      88.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_002823183
      64.53% cov
    • Alignment Length
      1,196 bp
Occurrence
107 times in PatSeqDB
Tools
SEQ ID NO
3
Length
1,281
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:31981670
      NM_010544
      1 of 4 hits reported for Mus musculus.
    • Hit length
      2,464 bp
    • E Value
      0E0
    • BLAST Score
      2,342.7 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_010544
      51.95% cov
    • Alignment Length
      1,281 bp
    • CIGAR string
      396MN750M2N124MD7M mismatches: 3 - insertions: 0 - deletions: 1
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:213688397
      NM_053384
    • Hit length
      2,272 bp
    • E Value
      0E0
    • BLAST Score
      2,049.1 bits
    • Similarity
      95.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_053384
      56.34% cov
    • Alignment Length
      1,282 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264928
      XM_001092385
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      2,066 bp
    • E Value
      0E0
    • BLAST Score
      1,550.5 bits
    • Similarity
      88.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_001092385
      61.91% cov
    • Alignment Length
      1,281 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:289577264
      NM_002181
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      2,074 bp
    • E Value
      0E0
    • BLAST Score
      1,550.5 bits
    • Similarity
      88.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_002181
      61.67% cov
    • Alignment Length
      1,281 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332815556
      XM_526034
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,066 bp
    • E Value
      0E0
    • BLAST Score
      1,539.4 bits
    • Similarity
      88.38%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_526034
      61.91% cov
    • Alignment Length
      1,282 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297669470
      XM_002812870
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,023 bp
    • E Value
      0E0
    • BLAST Score
      1,539.4 bits
    • Similarity
      88.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002812870
      63.22% cov
    • Alignment Length
      1,281 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392258
      XM_002712595
    • Hit length
      1,290 bp
    • E Value
      0E0
    • BLAST Score
      1,465.5 bits
    • Similarity
      88.14%
    • Coverage
      96.49%
    • Alignment (schematic)

      SEQ ID NO 3
      96.49% cov
      XM_002712595
      95.58% cov
    • Alignment Length
      1,239 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311273082
      XM_001925486
      1 of 2 hits reported for Sus scrofa.
    • Hit length
      2,214 bp
    • E Value
      0E0
    • BLAST Score
      1,452.6 bits
    • Similarity
      87.44%
    • Coverage
      98.99%
    • Alignment (schematic)

      SEQ ID NO 3
      98.99% cov
      XM_001925486
      57.09% cov
    • Alignment Length
      1,274 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296205628
      XM_002749801
    • Hit length
      1,336 bp
    • E Value
      0E0
    • BLAST Score
      1,445.2 bits
    • Similarity
      87.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002749801
      95.73% cov
    • Alignment Length
      1,283 bp
Occurrence
102 times in PatSeqDB
Tools
SEQ ID NO
4
Length
1,313
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:161484664
      NM_009170
      1 of 5 hits reported for Mus musculus.
    • Hit length
      2,727 bp
    • E Value
      0E0
    • BLAST Score
      2,420.2 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_009170
      48.15% cov
    • Alignment Length
      1,313 bp
    • CIGAR string
      364MN948M mismatches: 1 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:8394266
      NM_017221
    • Hit length
      1,715 bp
    • E Value
      0E0
    • BLAST Score
      2,076.8 bits
    • Similarity
      95.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_017221
      76.56% cov
    • Alignment Length
      1,316 bp
  • Meriones unguiculatus

    Meriones unguiculatus

    • Public DB hit
      GI:50508062
      AB185174
      1 of 2 hits reported for Meriones unguiculatus.
    • Hit length
      1,679 bp
    • E Value
      0E0
    • BLAST Score
      1,966 bits
    • Similarity
      93.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB185174
      78.2% cov
    • Alignment Length
      1,315 bp
  • Suncus murinus

    Suncus murinus

    • Public DB hit
      GI:158053031
      AB256041
    • Hit length
      2,230 bp
    • E Value
      0E0
    • BLAST Score
      1,142.3 bits
    • Similarity
      85.03%
    • Coverage
      86.52%
    • Alignment (schematic)

      SEQ ID NO 4
      86.52% cov
      AB256041
      50.81% cov
    • Alignment Length
      1,149 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194210183
      XM_001914885
    • Hit length
      1,209 bp
    • E Value
      0E0
    • BLAST Score
      1,136.8 bits
    • Similarity
      91.08%
    • Coverage
      63.98%
    • Alignment (schematic)

      SEQ ID NO 4
      63.98% cov
      XM_001914885
      69.48% cov
    • Alignment Length
      841 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296210141
      XM_002807047
    • Hit length
      1,434 bp
    • E Value
      0E0
    • BLAST Score
      1,120.2 bits
    • Similarity
      90.74%
    • Coverage
      63.98%
    • Alignment (schematic)

      SEQ ID NO 4
      63.98% cov
      XM_002807047
      58.58% cov
    • Alignment Length
      842 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332263734
      XM_003280860
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      1,109.1 bits
    • Similarity
      90.5%
    • Coverage
      63.98%
    • Alignment (schematic)

      SEQ ID NO 4
      63.98% cov
      XM_003280860
      53.5% cov
    • Alignment Length
      842 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291397345
      XM_002715022
    • Hit length
      1,356 bp
    • E Value
      0E0
    • BLAST Score
      1,105.4 bits
    • Similarity
      90.52%
    • Coverage
      63.82%
    • Alignment (schematic)

      SEQ ID NO 4
      63.82% cov
      XM_002715022
      61.8% cov
    • Alignment Length
      844 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682094
      XM_002818721
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      1,090.6 bits
    • Similarity
      90.05%
    • Coverage
      63.98%
    • Alignment (schematic)

      SEQ ID NO 4
      63.98% cov
      XM_002818721
      53.5% cov
    • Alignment Length
      844 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297289744
      XM_001106515
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      1,083.3 bits
    • Similarity
      90.02%
    • Coverage
      63.82%
    • Alignment (schematic)

      SEQ ID NO 4
      63.82% cov
      XM_001106515
      53.38% cov
    • Alignment Length
      842 bp
Occurrence
112 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,256
Sequence Type
DNA
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Not specified
Determined organism
  • Danio rerio

    Danio rerio

    • Public DB hit
      GI:18859356
      NM_131063
      1 of 5 hits reported for Danio rerio.
    • Hit length
      2,600 bp
    • E Value
      0E0
    • BLAST Score
      2,309.4 bits
    • Similarity
      99.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_131063
      48.31% cov
    • Alignment Length
      1,257 bp
    • CIGAR string
      1111MI74MD70M mismatches: 0 - insertions: 1 - deletions: 1
  • Cyprinus carpio

    Cyprinus carpio

    • Public DB hit
      GI:38373943
      AY460200
    • Hit length
      1,703 bp
    • E Value
      0E0
    • BLAST Score
      1,829.3 bits
    • Similarity
      93.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY460200
      73.58% cov
    • Alignment Length
      1,259 bp
  • Polypterus bichir

    Polypterus bichir

    • Public DB hit
      GI:145586984
      AB301497
    • Hit length
      1,263 bp
    • E Value
      0E0
    • BLAST Score
      1,159 bits
    • Similarity
      84.85%
    • Coverage
      93.15%
    • Alignment (schematic)

      SEQ ID NO 5
      93.15% cov
      AB301497
      93.11% cov
    • Alignment Length
      1,201 bp
  • Paralichthys olivaceus

    Paralichthys olivaceus

    • Public DB hit
      GI:5441264
      AB029748
    • Hit length
      1,718 bp
    • E Value
      6.28E-172
    • BLAST Score
      614.2 bits
    • Similarity
      76.76%
    • Coverage
      95.7%
    • Alignment (schematic)

      SEQ ID NO 5
      95.7% cov
      AB029748
      69.27% cov
    • Alignment Length
      1,239 bp
  • Astyanax mexicanus

    Astyanax mexicanus

    • Public DB hit
      GI:51511315
      AY661431
    • Hit length
      1,550 bp
    • E Value
      5.03E-148
    • BLAST Score
      534.8 bits
    • Similarity
      79.67%
    • Coverage
      61.23%
    • Alignment (schematic)

      SEQ ID NO 5
      61.23% cov
      AY661431
      49.61% cov
    • Alignment Length
      787 bp
Occurrence
112 times in PatSeqDB
Tools
SEQ ID NO
6
Length
1,425
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:663156
      L38518
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      1,576 bp
    • E Value
      0E0
    • BLAST Score
      2,621.5 bits
    • Similarity
      99.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      L38518
      90.42% cov
    • Alignment Length
      1,425 bp
    • CIGAR string
      1386M3N36M mismatches: 3 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332870270
      XM_001147185
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      2,597.5 bits
    • Similarity
      99.51%
    • Coverage
      99.93%
    • Alignment (schematic)

      SEQ ID NO 6
      99.93% cov
      XM_001147185
      90.7% cov
    • Alignment Length
      1,424 bp
    • CIGAR string
      575MN274MN393M2N140M3N35M1H mismatches: 7 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:208967465
      AB464234
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,403 bp
    • E Value
      0E0
    • BLAST Score
      2,560.6 bits
    • Similarity
      100%
    • Coverage
      97.26%
    • Alignment (schematic)

      SEQ ID NO 6
      97.26% cov
      AB464234
      98.79% cov
    • Alignment Length
      1,386 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332263734
      XM_003280860
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      2,470.1 bits
    • Similarity
      97.89%
    • Coverage
      99.93%
    • Alignment (schematic)

      SEQ ID NO 6
      99.93% cov
      XM_003280860
      90.7% cov
    • Alignment Length
      1,424 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297682094
      XM_002818721
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      2,462.7 bits
    • Similarity
      97.76%
    • Coverage
      99.93%
    • Alignment (schematic)

      SEQ ID NO 6
      99.93% cov
      XM_002818721
      90.7% cov
    • Alignment Length
      1,426 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297289744
      XM_001106515
    • Hit length
      1,570 bp
    • E Value
      0E0
    • BLAST Score
      2,331.6 bits
    • Similarity
      96.14%
    • Coverage
      99.93%
    • Alignment (schematic)

      SEQ ID NO 6
      99.93% cov
      XM_001106515
      90.7% cov
    • Alignment Length
      1,425 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296210141
      XM_002807047
    • Hit length
      1,434 bp
    • E Value
      0E0
    • BLAST Score
      1,860.7 bits
    • Similarity
      94.02%
    • Coverage
      86.25%
    • Alignment (schematic)

      SEQ ID NO 6
      86.25% cov
      XM_002807047
      85.7% cov
    • Alignment Length
      1,237 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73978765
      XM_845357
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      1,386 bp
    • E Value
      0E0
    • BLAST Score
      1,786.8 bits
    • Similarity
      90.07%
    • Coverage
      97.26%
    • Alignment (schematic)

      SEQ ID NO 6
      97.26% cov
      XM_845357
      99.78% cov
    • Alignment Length
      1,400 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291397345
      XM_002715022
    • Hit length
      1,356 bp
    • E Value
      0E0
    • BLAST Score
      1,652 bits
    • Similarity
      91.36%
    • Coverage
      84.91%
    • Alignment (schematic)

      SEQ ID NO 6
      84.91% cov
      XM_002715022
      89.16% cov
    • Alignment Length
      1,215 bp
Occurrence
113 times in PatSeqDB
Tools
SEQ ID NO
7
Length
939
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:663154
      L38517
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      1,277 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      L38517
      73.53% cov
    • Alignment Length
      939 bp
    • CIGAR string
      939M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332815556
      XM_526034
    • Hit length
      2,066 bp
    • E Value
      0E0
    • BLAST Score
      1,685.3 bits
    • Similarity
      99.15%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 7
      99.68% cov
      XM_526034
      45.3% cov
    • Alignment Length
      936 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297669470
      XM_002812870
    • Hit length
      2,023 bp
    • E Value
      0E0
    • BLAST Score
      1,668.6 bits
    • Similarity
      98.82%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 7
      99.68% cov
      XM_002812870
      46.27% cov
    • Alignment Length
      936 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264928
      XM_001092385
    • Hit length
      2,066 bp
    • E Value
      0E0
    • BLAST Score
      1,624.3 bits
    • Similarity
      97.97%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 7
      99.68% cov
      XM_001092385
      45.3% cov
    • Alignment Length
      936 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168745827
      CU689958
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,326 bp
    • E Value
      0E0
    • BLAST Score
      1,572.6 bits
    • Similarity
      98.87%
    • Coverage
      93.82%
    • Alignment (schematic)

      SEQ ID NO 7
      93.82% cov
      CU689958
      66.52% cov
    • Alignment Length
      884 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296205628
      XM_002749801
    • Hit length
      1,336 bp
    • E Value
      0E0
    • BLAST Score
      1,519.1 bits
    • Similarity
      95.94%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 7
      99.68% cov
      XM_002749801
      70.06% cov
    • Alignment Length
      936 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:164448607
      NM_001076870
    • Hit length
      1,911 bp
    • E Value
      0E0
    • BLAST Score
      1,303 bits
    • Similarity
      91.77%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 7
      99.68% cov
      NM_001076870
      48.98% cov
    • Alignment Length
      936 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332246582
      XM_003272384
    • Hit length
      2,022 bp
    • E Value
      0E0
    • BLAST Score
      1,286.4 bits
    • Similarity
      97.85%
    • Coverage
      79.34%
    • Alignment (schematic)

      SEQ ID NO 7
      79.34% cov
      XM_003272384
      36.8% cov
    • Alignment Length
      745 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301755724
      XM_002913694
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      1,071 bp
    • E Value
      0E0
    • BLAST Score
      1,280.8 bits
    • Similarity
      91.35%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 7
      99.68% cov
      XM_002913694
      87.39% cov
    • Alignment Length
      936 bp
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392258
      XM_002712595
      1 of 2 hits reported for Oryctolagus cuniculus.
    • Hit length
      1,290 bp
    • E Value
      0E0
    • BLAST Score
      1,280.8 bits
    • Similarity
      91.36%
    • Coverage
      99.68%
    • Alignment (schematic)

      SEQ ID NO 7
      99.68% cov
      XM_002712595
      72.56% cov
    • Alignment Length
      937 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194211319
      XM_001491778
    • Hit length
      1,032 bp
    • E Value
      0E0
    • BLAST Score
      1,275.3 bits
    • Similarity
      91.57%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 7
      98.4% cov
      XM_001491778
      89.53% cov
    • Alignment Length
      925 bp
Occurrence
29 times in PatSeqDB
Tools
SEQ ID NO
8
Length
425
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Not specified
Determined organism
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:45382239
      NP_990152
    • Hit length
      425 aa
    • E Value
      0E0
    • BLAST Score
      879 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_990152
      100% cov
    • Alignment Length
      425 aa
    • CIGAR string
      425M mismatches: 0 - insertions: 0 - deletions: 0
  • Taeniopygia guttata

    Taeniopygia guttata

    • Public DB hit
      GI:224044657
      XP_002190744
    • Hit length
      425 aa
    • E Value
      0E0
    • BLAST Score
      786.6 bits
    • Similarity
      93.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002190744
      100% cov
    • Alignment Length
      426 aa
    • CIGAR string
      MN34MN2MN168MN2MN9MN6MN2M2N14MNMNMN28MN3MNMDM2N2MN5MNMN5MN6M2N4MN2MN22MN25MNM2N6M2NMINMNM5N20MN6M4NM mismatches: 42 - insertions: 1 - deletions: 1
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:309951106
      NP_001185482
    • Hit length
      477 aa
    • E Value
      0E0
    • BLAST Score
      692.6 bits
    • Similarity
      79.92%
    • Coverage
      99.29%
    • Alignment (schematic)

      SEQ ID NO 8
      99.29% cov
      NP_001185482
      100% cov
    • Alignment Length
      478 aa
    • CIGAR string
      3H6MN3M5N2MN4MN6MN36MN141MN19M2N9MN4MNM3NMN7MN2MN14MD2MNM2N12INM2N2M14IMN4M3N7M2NM2IM3N4MN6MN3MNMN39M2N3MNMNM3N28INMNM2N2MN6MN3MN2MNMN2MNMN6M4NM mismatches: 62 - insertions: 56 - deletions: 1
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:149031428
      EDL86418
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      437 aa
    • E Value
      0E0
    • BLAST Score
      686.4 bits
    • Similarity
      85.45%
    • Coverage
      99.29%
    • Alignment (schematic)

      SEQ ID NO 8
      99.29% cov
      EDL86418
      99.77% cov
    • Alignment Length
      440 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73978764
      XP_861428
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      434 aa
    • E Value
      0E0
    • BLAST Score
      684.5 bits
    • Similarity
      85.78%
    • Coverage
      99.29%
    • Alignment (schematic)

      SEQ ID NO 8
      99.29% cov
      XP_861428
      100% cov
    • Alignment Length
      436 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:21617861
      NP_033196
      1 of 2 hits reported for Mus musculus.
    • Hit length
      437 aa
    • E Value
      0E0
    • BLAST Score
      683.3 bits
    • Similarity
      85.19%
    • Coverage
      99.29%
    • Alignment (schematic)

      SEQ ID NO 8
      99.29% cov
      NP_033196
      99.77% cov
    • Alignment Length
      439 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291397346
      XP_002715068
    • Hit length
      451 aa
    • E Value
      0E0
    • BLAST Score
      672.9 bits
    • Similarity
      83.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002715068
      100% cov
    • Alignment Length
      452 aa
  • Meriones unguiculatus

    Meriones unguiculatus

    • Public DB hit
      GI:50508063
      BAD30089
    • Hit length
      437 aa
    • E Value
      0E0
    • BLAST Score
      670.6 bits
    • Similarity
      83.79%
    • Coverage
      99.06%
    • Alignment (schematic)

      SEQ ID NO 8
      99.06% cov
      BAD30089
      99.54% cov
    • Alignment Length
      438 aa
  • Suncus murinus

    Suncus murinus

    • Public DB hit
      GI:158053032
      BAF81895
    • Hit length
      431 aa
    • E Value
      0E0
    • BLAST Score
      666 bits
    • Similarity
      83.29%
    • Coverage
      96%
    • Alignment (schematic)

      SEQ ID NO 8
      96% cov
      BAF81895
      96.29% cov
    • Alignment Length
      419 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4506939
      NP_000184
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      462 aa
    • E Value
      0E0
    • BLAST Score
      662.5 bits
    • Similarity
      81.53%
    • Coverage
      94.59%
    • Alignment (schematic)

      SEQ ID NO 8
      94.59% cov
      NP_000184
      95.67% cov
    • Alignment Length
      444 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297289745
      XP_001106515
    • Hit length
      465 aa
    • E Value
      0E0
    • BLAST Score
      661 bits
    • Similarity
      81.26%
    • Coverage
      94.59%
    • Alignment (schematic)

      SEQ ID NO 8
      94.59% cov
      XP_001106515
      95.05% cov
    • Alignment Length
      443 aa
Occurrence
127 times in PatSeqDB
Tools
SEQ ID NO
9
Length
396
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Not specified
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:6681181
      NP_031883
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      796.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_031883
      100% cov
    • Alignment Length
      396 aa
    • CIGAR string
      396M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:274327782
      NP_445819
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      793.5 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_445819
      100% cov
    • Alignment Length
      396 aa
    • CIGAR string
      19MN288MN87M mismatches: 2 - insertions: 0 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:194666942
      XP_001788921
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      783.1 bits
    • Similarity
      99.49%
    • Coverage
      99.75%
    • Alignment (schematic)

      SEQ ID NO 9
      99.75% cov
      XP_001788921
      99.75% cov
    • Alignment Length
      395 aa
    • CIGAR string
      7MN10MN32MN129MN126MN76MN8MN1H mismatches: 7 - insertions: 0 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301783637
      XP_002927234
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      755.7 bits
    • Similarity
      98.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_002927234
      100% cov
    • Alignment Length
      396 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296211564
      XP_002752473
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      749.6 bits
    • Similarity
      98.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_002752473
      100% cov
    • Alignment Length
      396 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:19482158
      NP_066382
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      740.3 bits
    • Similarity
      98.67%
    • Coverage
      94.95%
    • Alignment (schematic)

      SEQ ID NO 9
      94.95% cov
      NP_066382
      94.95% cov
    • Alignment Length
      376 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332206332
      XP_003252244
    • Hit length
      396 aa
    • E Value
      0E0
    • BLAST Score
      703 bits
    • Similarity
      95.21%
    • Coverage
      94.95%
    • Alignment (schematic)

      SEQ ID NO 9
      94.95% cov
      XP_003252244
      94.95% cov
    • Alignment Length
      376 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194211949
      XP_001915405
    • Hit length
      398 aa
    • E Value
      0E0
    • BLAST Score
      684.1 bits
    • Similarity
      92.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_001915405
      100% cov
    • Alignment Length
      399 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297262274
      XP_001099775
    • Hit length
      558 aa
    • E Value
      6.8E-164
    • BLAST Score
      582 bits
    • Similarity
      99.32%
    • Coverage
      74.75%
    • Alignment (schematic)

      SEQ ID NO 9
      74.75% cov
      XP_001099775
      53.05% cov
    • Alignment Length
      296 aa
  • Anolis carolinensis

    Anolis carolinensis

    • Public DB hit
      GI:327277053
      XP_003223280
    • Hit length
      410 aa
    • E Value
      5.21E-158
    • BLAST Score
      562.8 bits
    • Similarity
      80.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_003223280
      98.54% cov
    • Alignment Length
      406 aa
  • Xenopus (Silurana) tropicalis

    Xenopus (Silurana) tropicalis

    • Public DB hit
      GI:148232136
      NP_001090638
    • Hit length
      396 aa
    • E Value
      3.48E-143
    • BLAST Score
      513.5 bits
    • Similarity
      77.63%
    • Coverage
      97.98%
    • Alignment (schematic)

      SEQ ID NO 9
      97.98% cov
      NP_001090638
      96.72% cov
    • Alignment Length
      389 aa
  • Xenopus laevis

    Xenopus laevis

    • Public DB hit
      GI:148223535
      NP_001079260
    • Hit length
      396 aa
    • E Value
      1.33E-140
    • BLAST Score
      505 bits
    • Similarity
      77.18%
    • Coverage
      98.23%
    • Alignment (schematic)

      SEQ ID NO 9
      98.23% cov
      NP_001079260
      96.97% cov
    • Alignment Length
      390 aa
Occurrence
150 times in PatSeqDB
Tools
SEQ ID NO
10
Length
411
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Not specified
Determined organism
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:14149643
      NP_034674
      1 of 3 hits reported for Mus musculus.
    • Hit length
      449 aa
    • E Value
      0E0
    • BLAST Score
      837 bits
    • Similarity
      99.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_034674
      91.54% cov
    • Alignment Length
      411 aa
    • CIGAR string
      132MN249MN28M mismatches: 2 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264929
      XP_001092385
    • Hit length
      411 aa
    • E Value
      0E0
    • BLAST Score
      761.9 bits
    • Similarity
      97.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001092385
      100% cov
    • Alignment Length
      411 aa
    • CIGAR string
      4MN5MN3MN5MN4MN106MN80MNMN7MN12MN14MN26MN9MN17MN20MN39MN9MN4MN3MN11M2N11M mismatches: 21 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:213688398
      NP_445836
    • Hit length
      411 aa
    • E Value
      0E0
    • BLAST Score
      761.1 bits
    • Similarity
      98.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_445836
      100% cov
    • Alignment Length
      411 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297669471
      XP_002812916
    • Hit length
      411 aa
    • E Value
      0E0
    • BLAST Score
      759.2 bits
    • Similarity
      96.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002812916
      100% cov
    • Alignment Length
      411 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:119392086
      NP_002172
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      411 aa
    • E Value
      0E0
    • BLAST Score
      758.1 bits
    • Similarity
      97.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_002172
      100% cov
    • Alignment Length
      411 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114583388
      XP_526034
    • Hit length
      411 aa
    • E Value
      0E0
    • BLAST Score
      753.1 bits
    • Similarity
      96.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_526034
      100% cov
    • Alignment Length
      411 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296205629
      XP_002749847
    • Hit length
      411 aa
    • E Value
      0E0
    • BLAST Score
      747.7 bits
    • Similarity
      95.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002749847
      100% cov
    • Alignment Length
      411 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291392259
      XP_002712641
    • Hit length
      429 aa
    • E Value
      0E0
    • BLAST Score
      739.2 bits
    • Similarity
      97.18%
    • Coverage
      94.89%
    • Alignment (schematic)

      SEQ ID NO 10
      94.89% cov
      XP_002712641
      90.91% cov
    • Alignment Length
      390 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311273083
      XP_001925521
    • Hit length
      410 aa
    • E Value
      0E0
    • BLAST Score
      738.4 bits
    • Similarity
      97.18%
    • Coverage
      94.89%
    • Alignment (schematic)

      SEQ ID NO 10
      94.89% cov
      XP_001925521
      95.12% cov
    • Alignment Length
      390 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332246583
      XP_003272432
    • Hit length
      411 aa
    • E Value
      0E0
    • BLAST Score
      736.5 bits
    • Similarity
      94.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003272432
      100% cov
    • Alignment Length
      411 aa
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:126337804
      XP_001364321
    • Hit length
      599 aa
    • E Value
      0E0
    • BLAST Score
      687.6 bits
    • Similarity
      93.51%
    • Coverage
      93.67%
    • Alignment (schematic)

      SEQ ID NO 10
      93.67% cov
      XP_001364321
      64.27% cov
    • Alignment Length
      385 aa
Occurrence
111 times in PatSeqDB
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