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Search for Biological Sequences disclosed in Patents

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Data obtained from: USPTO Fulltext
24 sequences found in this patent (in total)

Displaying 1 - 10 of 24 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,944
Type
nucleotide
Locations
Detailed Description

Declared organism:
Human herpesvirus 8

Determined organism:
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      0E0
    • BLAST Score
      3,591 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      U75698
      1.41% cov
    • Alignment Length
      1,944 bp
    • CIGAR string
      1944M mismatches: 0 - insertions: 0 - deletions: 0
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:312275140
      HQ404500
      1 of 5 hits reported for Human herpesvirus 8.
    • Hit length
      136,100 bp
    • E Value
      0E0
    • BLAST Score
      3,579.9 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HQ404500
      1.43% cov
    • Alignment Length
      1,944 bp
    • CIGAR string
      391MN1206MN345M mismatches: 2 - insertions: 0 - deletions: 0
Occurrence
Tools
PatSeq Finder
SEQ ID NO
2
Length
836
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Human herpesvirus 8

Determined organism:
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      0E0
    • BLAST Score
      1,544.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      U75698
      0.61% cov
    • Alignment Length
      836 bp
    • CIGAR string
      836M mismatches: 0 - insertions: 0 - deletions: 0
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:312275140
      HQ404500
      1 of 4 hits reported for Human herpesvirus 8.
    • Hit length
      136,100 bp
    • E Value
      0E0
    • BLAST Score
      1,539.4 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      HQ404500
      0.61% cov
    • Alignment Length
      836 bp
    • CIGAR string
      391MN444M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
Tools
PatSeq Finder
SEQ ID NO
3
Length
771
Type
nucleotide
Locations
Detailed Description

Declared organism:
Human herpesvirus 8

Determined organism:
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:3551761
      U71366
      1 of 7 hits reported for Human herpesvirus 8.
    • Hit length
      5,777 bp
    • E Value
      0E0
    • BLAST Score
      1,424.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      U71366
      13.35% cov
    • Alignment Length
      771 bp
    • CIGAR string
      771M mismatches: 0 - insertions: 0 - deletions: 0
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      0E0
    • BLAST Score
      1,424.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      U75698
      0.56% cov
    • Alignment Length
      771 bp
    • CIGAR string
      771M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
Tools
PatSeq Finder
SEQ ID NO
4
Length
11
Type
nucleotide
Locations
Detailed Description

Declared organism:
Saccharomyces cerevisiae

Determined organism:
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
11
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Human herpesvirus 8

Determined organism:
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
21
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:312275140
      HQ404500
      1 of 4 hits reported for Human herpesvirus 8.
    • Hit length
      136,100 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ404500
      0.02% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Talaromyces marneffei

    Talaromyces marneffei

    • Public DB hit
      GI:33860251
      AY347307
    • Hit length
      35,438 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY347307
      0.06% cov
    • Alignment Length
      21 bp
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      U75698
      0.02% cov
    • Alignment Length
      21 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:126153555
      CU302198
      1 of 4 hits reported for Mus musculus.
    • Hit length
      180,540 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 6
      90.48% cov
      CU302198
      0.01% cov
    • Alignment Length
      19 bp
  • Panicum virgatum

    Panicum virgatum

    • Public DB hit
      GI:312283791
      AC243260
    • Hit length
      172,615 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AC243260
      0.01% cov
    • Alignment Length
      21 bp
Occurrence
2 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:312275140
      HQ404500
      1 of 4 hits reported for Human herpesvirus 8.
    • Hit length
      136,100 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      HQ404500
      0.01% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      U75698
      0.01% cov
    • Alignment Length
      18 bp
  • Verticillium alfalfae VaMs.102

    Verticillium alfalfae VaMs.102

    • Public DB hit
      GI:302411307
      XM_003003441
      1 of 2 hits reported for Verticillium alfalfae VaMs.102.
    • Hit length
      390 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      XM_003003441
      4.36% cov
    • Alignment Length
      17 bp
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224129243
      XM_002328890
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      1,878 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      XM_002328890
      0.91% cov
    • Alignment Length
      17 bp
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:21698893
      AP003330
      1 of 3 hits reported for Oryza sativa Japonica Group.
    • Hit length
      163,671 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 7
      94.44% cov
      AP003330
      0.01% cov
    • Alignment Length
      17 bp
Occurrence
2 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
25
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:76160824
      DQ097683
      1 of 8 hits reported for Human herpesvirus 8.
    • Hit length
      3,363 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      DQ097683
      0.74% cov
    • Alignment Length
      25 bp
    • CIGAR string
      25M mismatches: 0 - insertions: 0 - deletions: 0
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      U75698
      0.02% cov
    • Alignment Length
      25 bp
    • CIGAR string
      25M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
Tools
PatSeq Finder
SEQ ID NO
9
Length
20
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:312275140
      HQ404500
      1 of 7 hits reported for Human herpesvirus 8.
    • Hit length
      136,100 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      HQ404500
      0.01% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      U75698
      0.01% cov
    • Alignment Length
      20 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
10
Length
21
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Human herpesvirus 8

    Human herpesvirus 8

    • Public DB hit
      GI:312275140
      HQ404500
      1 of 4 hits reported for Human herpesvirus 8.
    • Hit length
      136,100 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      HQ404500
      0.02% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Talaromyces marneffei

    Talaromyces marneffei

    • Public DB hit
      GI:33860251
      AY347307
    • Hit length
      35,438 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY347307
      0.06% cov
    • Alignment Length
      21 bp
  • Human herpesvirus 8 type M

    Human herpesvirus 8 type M

    • Public DB hit
      GI:2065526
      U75698
    • Hit length
      137,508 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      U75698
      0.02% cov
    • Alignment Length
      21 bp
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:126153555
      CU302198
      1 of 4 hits reported for Mus musculus.
    • Hit length
      180,540 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      CU302198
      0.01% cov
    • Alignment Length
      19 bp
  • Panicum virgatum

    Panicum virgatum

    • Public DB hit
      GI:312283791
      AC243260
    • Hit length
      172,615 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AC243260
      0.01% cov
    • Alignment Length
      21 bp
Occurrence
2 times in PatSeqDB
Tools
PatSeq Finder

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