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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
115 sequences found in this patent (in total)

Displaying 1 - 10 of 115 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
584
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:13872872
      AP002540
      1 of 4 hits reported for Oryza sativa Japonica Group.
    • Hit length
      167,029 bp
    • E Value
      0E0
    • BLAST Score
      1,079.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP002540
      0.35% cov
    • Alignment Length
      584 bp
    • CIGAR string
      584M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza rufipogon

    Oryza rufipogon

    • Public DB hit
      GI:53748934
      AB175917
      1 of 13 hits reported for Oryza rufipogon.
    • Hit length
      1,457 bp
    • E Value
      0E0
    • BLAST Score
      1,072.2 bits
    • Similarity
      99.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB175917
      40.01% cov
    • Alignment Length
      584 bp
    • CIGAR string
      424MD159M mismatches: 0 - insertions: 0 - deletions: 1
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
728
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:57114402
      AC084380
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      126,163 bp
    • E Value
      0E0
    • BLAST Score
      1,345.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC084380
      0.58% cov
    • Alignment Length
      728 bp
    • CIGAR string
      728M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza officinalis

    Oryza officinalis

    • Public DB hit
      GI:209969843
      AC213147
    • Hit length
      122,838 bp
    • E Value
      0E0
    • BLAST Score
      819.2 bits
    • Similarity
      91.11%
    • Coverage
      84.89%
    • Alignment (schematic)

      SEQ ID NO 2
      84.89% cov
      AC213147
      0.49% cov
    • Alignment Length
      619 bp
    • CIGAR string
      110H4MNMN2MN7MI8MN7MNMN2MDMDNMN8MN20M4D6M3D9MN14MN3M3N3MN53MD14MN12MN2M2DMD21MN42MN16MN3MN26MD8M6D9MN17MN6MN31MN21MN18MN5MN24MN7MN21MD15MN45MN38MN12M mismatches: 33 - insertions: 1 - deletions: 21
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
95
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:57114402
      AC084380
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      126,163 bp
    • E Value
      1.87E-41
    • BLAST Score
      176.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AC084380
      0.08% cov
    • Alignment Length
      95 bp
    • CIGAR string
      95M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza officinalis

    Oryza officinalis

    • Public DB hit
      GI:209969843
      AC213147
    • Hit length
      122,838 bp
    • E Value
      3.16E-34
    • BLAST Score
      152.5 bits
    • Similarity
      95.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AC213147
      0.08% cov
    • Alignment Length
      95 bp
    • CIGAR string
      34MN18MN21MN9MD9M mismatches: 3 - insertions: 0 - deletions: 1
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
120
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:57114402
      AC084380
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      126,163 bp
    • E Value
      3.28E-55
    • BLAST Score
      222.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AC084380
      0.1% cov
    • Alignment Length
      120 bp
    • CIGAR string
      120M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
225
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:291461617
      AB551389
      1 of 2 hits reported for Oryza sativa Indica Group.
    • Hit length
      6,794 bp
    • E Value
      3.02E-113
    • BLAST Score
      416.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AB551389
      3.31% cov
    • Alignment Length
      225 bp
    • CIGAR string
      225M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:30102951
      AC144491
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      132,151 bp
    • E Value
      3.02E-113
    • BLAST Score
      416.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AC144491
      0.17% cov
    • Alignment Length
      225 bp
    • CIGAR string
      225M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
770
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:7637397
      AP001633
    • Hit length
      175,072 bp
    • E Value
      0E0
    • BLAST Score
      1,423 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AP001633
      0.44% cov
    • Alignment Length
      770 bp
    • CIGAR string
      770M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
715
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:21698894
      AP003370
    • Hit length
      101,104 bp
    • E Value
      0E0
    • BLAST Score
      1,321.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AP003370
      0.71% cov
    • Alignment Length
      715 bp
    • CIGAR string
      715M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
334
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:18640658
      AC084766
    • Hit length
      130,306 bp
    • E Value
      1.2E-173
    • BLAST Score
      617.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AC084766
      0.26% cov
    • Alignment Length
      334 bp
    • CIGAR string
      334M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
355
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:33667151
      AC120509
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      122,496 bp
    • E Value
      0E0
    • BLAST Score
      656.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AC120509
      0.29% cov
    • Alignment Length
      355 bp
    • CIGAR string
      355M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
538
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:20160968
      AP003300
    • Hit length
      136,321 bp
    • E Value
      0E0
    • BLAST Score
      994.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP003300
      0.39% cov
    • Alignment Length
      538 bp
    • CIGAR string
      538M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder

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