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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
35 sequences found in this patent (in total)

Displaying 1 - 10 of 35 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
4,907
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
5,452
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Helper vector pTKRED

    Helper vector pTKRED

    • Public DB hit
      GI:284822307
      GU327533
    • Hit length
      10,726 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      GU327533
      17.1% cov
    • Alignment Length
      1,834 bp
    • CIGAR string
      414MN1419M3618H mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      CP001396
      0.04% cov
    • Alignment Length
      1,834 bp
    • CIGAR string
      414MN1419M3618H mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector lambdaS2775

    Cloning vector lambdaS2775

    • Public DB hit
      GI:186702979
      EU421722
    • Hit length
      37,769 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      EU421722
      4.86% cov
    • Alignment Length
      1,834 bp
    • CIGAR string
      414MN1419M3618H mismatches: 1 - insertions: 0 - deletions: 0
  • Red-recombineering helper plasmid RSFRedkan

    Red-recombineering helper plasmid RSFRedkan

    • Public DB hit
      GI:210076661
      FJ347162
    • Hit length
      11,037 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      FJ347162
      16.62% cov
    • Alignment Length
      1,834 bp
  • Red-recombineering helper plasmid RSFRedTER

    Red-recombineering helper plasmid RSFRedTER

    • Public DB hit
      GI:210076654
      FJ347161
    • Hit length
      12,576 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      FJ347161
      14.58% cov
    • Alignment Length
      1,834 bp
  • Shuttle vector pUCP18-RedS

    Shuttle vector pUCP18-RedS

    • Public DB hit
      GI:154918186
      EU073163
    • Hit length
      9,659 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      EU073163
      18.99% cov
    • Alignment Length
      1,834 bp
  • Red recombinase plasmid pKD46

    Red recombinase plasmid pKD46

    • Public DB hit
      GI:15554345
      AY048746
    • Hit length
      6,329 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      AY048746
      28.98% cov
    • Alignment Length
      1,834 bp
  • Enterobacteria phage lambda

    Enterobacteria phage lambda

    • Public DB hit
      GI:215104
      J02459
    • Hit length
      48,502 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      J02459
      3.78% cov
    • Alignment Length
      1,834 bp
  • Cloning vector TLF97-3

    Cloning vector TLF97-3

    • Public DB hit
      GI:1066312
      U39286
    • Hit length
      42,531 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      U39286
      4.31% cov
    • Alignment Length
      1,834 bp
  • Cloning vector TLF97-2

    Cloning vector TLF97-2

    • Public DB hit
      GI:1066308
      U39285
    • Hit length
      42,530 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      U39285
      4.31% cov
    • Alignment Length
      1,834 bp
  • Cloning vector TLF97-1

    Cloning vector TLF97-1

    • Public DB hit
      GI:1066304
      U39284
    • Hit length
      42,529 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      U39284
      4.31% cov
    • Alignment Length
      1,834 bp
  • Cloning vector lambda TXF97

    Cloning vector lambda TXF97

    • Public DB hit
      GI:1051181
      U37692
    • Hit length
      42,704 bp
    • E Value
      0E0
    • BLAST Score
      3,382.3 bits
    • Similarity
      99.95%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      U37692
      4.29% cov
    • Alignment Length
      1,834 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      3,376.8 bits
    • Similarity
      99.89%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      AM946981
      0.04% cov
    • Alignment Length
      1,834 bp
  • Enterobacteria phage DE3

    Enterobacteria phage DE3

    • Public DB hit
      GI:194021541
      EU078592
    • Hit length
      42,925 bp
    • E Value
      0E0
    • BLAST Score
      3,376.8 bits
    • Similarity
      99.89%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      EU078592
      4.27% cov
    • Alignment Length
      1,834 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      3,376.8 bits
    • Similarity
      99.89%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      CP001665
      0.04% cov
    • Alignment Length
      1,834 bp
  • Cloning vector pKaKa1

    Cloning vector pKaKa1

    • Public DB hit
      GI:309274422
      GU074524
    • Hit length
      9,633 bp
    • E Value
      0E0
    • BLAST Score
      3,371.3 bits
    • Similarity
      99.84%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      GU074524
      19.04% cov
    • Alignment Length
      1,834 bp
  • Broad host range Red recombinase vector pRKaraRed

    Broad host range Red recombinase vector pRKaraRed

    • Public DB hit
      GI:298108757
      GU186864
    • Hit length
      10,903 bp
    • E Value
      0E0
    • BLAST Score
      3,363.9 bits
    • Similarity
      99.84%
    • Coverage
      33.58%
    • Alignment (schematic)

      SEQ ID NO 2
      33.58% cov
      GU186864
      16.78% cov
    • Alignment Length
      1,831 bp
  • Broad host range Red recombinase expression vector pRKcIRed

    Broad host range Red recombinase expression vector pRKcIRed

    • Public DB hit
      GI:55975978
      AY820185
    • Hit length
      10,790 bp
    • E Value
      0E0
    • BLAST Score
      3,363.9 bits
    • Similarity
      99.84%
    • Coverage
      33.58%
    • Alignment (schematic)

      SEQ ID NO 2
      33.58% cov
      AY820185
      16.96% cov
    • Alignment Length
      1,831 bp
  • Red recombinase plasmid pKD20

    Red recombinase plasmid pKD20

    • Public DB hit
      GI:15554338
      AY048745
    • Hit length
      6,078 bp
    • E Value
      0E0
    • BLAST Score
      3,360.2 bits
    • Similarity
      99.95%
    • Coverage
      33.42%
    • Alignment (schematic)

      SEQ ID NO 2
      33.42% cov
      AY048745
      29.98% cov
    • Alignment Length
      1,822 bp
  • Cloning vector pKaKa2

    Cloning vector pKaKa2

    • Public DB hit
      GI:309274431
      GU074525
    • Hit length
      18,909 bp
    • E Value
      0E0
    • BLAST Score
      3,356.5 bits
    • Similarity
      99.78%
    • Coverage
      33.55%
    • Alignment (schematic)

      SEQ ID NO 2
      33.55% cov
      GU074525
      9.67% cov
    • Alignment Length
      1,829 bp
  • Cloning vector pSC101BADgbaA-ISceI(amp)

    Cloning vector pSC101BADgbaA-ISceI(amp)

    • Public DB hit
      GI:138754318
      AM403094
    • Hit length
      10,672 bp
    • E Value
      0E0
    • BLAST Score
      3,356.5 bits
    • Similarity
      99.95%
    • Coverage
      33.38%
    • Alignment (schematic)

      SEQ ID NO 2
      33.38% cov
      AM403094
      17.05% cov
    • Alignment Length
      1,820 bp
  • Escherichia coli 536

    Escherichia coli 536

    • Public DB hit
      GI:110341805
      CP000247
    • Hit length
      4,938,920 bp
    • E Value
      0E0
    • BLAST Score
      3,171.8 bits
    • Similarity
      97.87%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      CP000247
      0.04% cov
    • Alignment Length
      1,834 bp
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      3,166.3 bits
    • Similarity
      97.82%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      CU928145
      0.04% cov
    • Alignment Length
      1,835 bp
  • Escherichia coli UMN026

    Escherichia coli UMN026

    • Public DB hit
      GI:218430358
      CU928163
    • Hit length
      5,202,090 bp
    • E Value
      0E0
    • BLAST Score
      3,160.7 bits
    • Similarity
      97.76%
    • Coverage
      33.64%
    • Alignment (schematic)

      SEQ ID NO 2
      33.64% cov
      CU928163
      0.04% cov
    • Alignment Length
      1,834 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
6,171
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Size marker plasmid pKF339

    Size marker plasmid pKF339

    • Public DB hit
      GI:1208491
      D45834
    • Hit length
      11,943 bp
    • E Value
      0E0
    • BLAST Score
      4,082.2 bits
    • Similarity
      99.95%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      D45834
      18.53% cov
    • Alignment Length
      2,213 bp
    • CIGAR string
      3958H1297MN915M mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector pAmin81

    Cloning vector pAmin81

    • Public DB hit
      GI:334306144
      HQ283398
    • Hit length
      3,654 bp
    • E Value
      0E0
    • BLAST Score
      4,073 bits
    • Similarity
      99.86%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      HQ283398
      60.65% cov
    • Alignment Length
      2,216 bp
    • CIGAR string
      3958H73M3I2140M mismatches: 0 - insertions: 3 - deletions: 0
  • Single-copy integration vector pLL39

    Single-copy integration vector pLL39

    • Public DB hit
      GI:146330301
      EF540896
    • Hit length
      8,019 bp
    • E Value
      0E0
    • BLAST Score
      4,067.4 bits
    • Similarity
      99.82%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      EF540896
      27.63% cov
    • Alignment Length
      2,216 bp
    • CIGAR string
      3958H73M3I1552MN587M mismatches: 1 - insertions: 3 - deletions: 0
  • Single-copy integtation vector pLL29

    Single-copy integtation vector pLL29

    • Public DB hit
      GI:146330297
      EF540895
    • Hit length
      7,029 bp
    • E Value
      0E0
    • BLAST Score
      4,067.4 bits
    • Similarity
      99.82%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      EF540895
      31.53% cov
    • Alignment Length
      2,216 bp
  • Single-copy integration vector pCL25

    Single-copy integration vector pCL25

    • Public DB hit
      GI:146330293
      EF540894
    • Hit length
      6,624 bp
    • E Value
      0E0
    • BLAST Score
      4,067.4 bits
    • Similarity
      99.82%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      EF540894
      33.45% cov
    • Alignment Length
      2,216 bp
  • HIS3/URA3 reporter vector pH3U3

    HIS3/URA3 reporter vector pH3U3

    • Public DB hit
      GI:94963135
      DQ515893
    • Hit length
      5,834 bp
    • E Value
      0E0
    • BLAST Score
      4,065.6 bits
    • Similarity
      99.82%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      DQ515893
      37.93% cov
    • Alignment Length
      2,213 bp
  • Expression vector pZS4Int-1

    Expression vector pZS4Int-1

    • Public DB hit
      GI:2315854
      U66308
    • Hit length
      6,000 bp
    • E Value
      0E0
    • BLAST Score
      4,065.6 bits
    • Similarity
      99.82%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      U66308
      36.88% cov
    • Alignment Length
      2,213 bp
  • Salmonella enterica subsp. enterica serovar Typhimurium

    Salmonella enterica subsp. enterica serovar Typhimurium

    • Public DB hit
      GI:47833
      X01654
    • Hit length
      9,263 bp
    • E Value
      0E0
    • BLAST Score
      4,065.6 bits
    • Similarity
      99.82%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      X01654
      23.89% cov
    • Alignment Length
      2,213 bp
  • uncultured bacterium

    uncultured bacterium

    • Public DB hit
      GI:204789630
      FJ158001
    • Hit length
      9,323 bp
    • E Value
      0E0
    • BLAST Score
      4,061.9 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      FJ158001
      23.77% cov
    • Alignment Length
      2,216 bp
  • Cloning vector pMAK705

    Cloning vector pMAK705

    • Public DB hit
      GI:21617574
      AF519766
    • Hit length
      5,593 bp
    • E Value
      0E0
    • BLAST Score
      4,061.9 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AF519766
      39.62% cov
    • Alignment Length
      2,216 bp
  • Cloning vector pSC101BADgbaA-ISceI(amp)

    Cloning vector pSC101BADgbaA-ISceI(amp)

    • Public DB hit
      GI:138754318
      AM403094
    • Hit length
      10,672 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AM403094
      20.74% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINTs-Kan2

    Cloning vector pBRINTs-Kan2

    • Public DB hit
      GI:11061062
      AJ278280
    • Hit length
      8,405 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AJ278280
      26.33% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINTs-Gen4

    Cloning vector pBRINTs-Gen4

    • Public DB hit
      GI:11061053
      AJ278279
    • Hit length
      8,017 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AJ278279
      27.6% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINTs-Cat2

    Cloning vector pBRINTs-Cat2

    • Public DB hit
      GI:11061044
      AJ278278
    • Hit length
      8,201 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AJ278278
      26.98% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINT-TsKm

    Cloning vector pBRINT-TsKm

    • Public DB hit
      GI:8250032
      AJ278283
    • Hit length
      8,310 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AJ278283
      26.63% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINT-TsGm

    Cloning vector pBRINT-TsGm

    • Public DB hit
      GI:8250026
      AJ278282
    • Hit length
      7,922 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AJ278282
      27.93% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINT-TsCm

    Cloning vector pBRINT-TsCm

    • Public DB hit
      GI:8250016
      AJ278281
    • Hit length
      8,094 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      AJ278281
      27.34% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pCL1920

    Cloning vector pCL1920

    • Public DB hit
      GI:77799775
      AB236930
    • Hit length
      4,549 bp
    • E Value
      0E0
    • BLAST Score
      4,047.1 bits
    • Similarity
      99.86%
    • Coverage
      35.63%
    • Alignment (schematic)

      SEQ ID NO 3
      35.63% cov
      AB236930
      48.41% cov
    • Alignment Length
      2,202 bp
  • Cloning vector pAmin82

    Cloning vector pAmin82

    • Public DB hit
      GI:334306142
      HQ283397
    • Hit length
      3,654 bp
    • E Value
      0E0
    • BLAST Score
      4,045.3 bits
    • Similarity
      99.64%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      HQ283397
      60.65% cov
    • Alignment Length
      2,216 bp
  • Expression vector pUHS*2Plac/ara-1 MCS1

    Expression vector pUHS*2Plac/ara-1 MCS1

    • Public DB hit
      GI:2315859
      U66313
    • Hit length
      4,004 bp
    • E Value
      0E0
    • BLAST Score
      4,037.9 bits
    • Similarity
      99.59%
    • Coverage
      35.86%
    • Alignment (schematic)

      SEQ ID NO 3
      35.86% cov
      U66313
      55.27% cov
    • Alignment Length
      2,213 bp
  • Tn7 delivery vector pGRG36

    Tn7 delivery vector pGRG36

    • Public DB hit
      GI:92429681
      DQ460223
    • Hit length
      12,549 bp
    • E Value
      0E0
    • BLAST Score
      3,927.1 bits
    • Similarity
      99.91%
    • Coverage
      34.55%
    • Alignment (schematic)

      SEQ ID NO 3
      34.55% cov
      DQ460223
      16.99% cov
    • Alignment Length
      2,132 bp
  • Cloning vector pMW219

    Cloning vector pMW219

    • Public DB hit
      GI:67968380
      AB005478
    • Hit length
      3,923 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      34.42%
    • Alignment (schematic)

      SEQ ID NO 3
      34.42% cov
      AB005478
      54.14% cov
    • Alignment Length
      2,124 bp
  • Cloning vector pMW218

    Cloning vector pMW218

    • Public DB hit
      GI:67968378
      AB005477
    • Hit length
      3,923 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      34.42%
    • Alignment (schematic)

      SEQ ID NO 3
      34.42% cov
      AB005477
      54.14% cov
    • Alignment Length
      2,124 bp
  • Cloning vector pMW119

    Cloning vector pMW119

    • Public DB hit
      GI:67968376
      AB005476
    • Hit length
      4,211 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      34.42%
    • Alignment (schematic)

      SEQ ID NO 3
      34.42% cov
      AB005476
      50.44% cov
    • Alignment Length
      2,124 bp
  • Cloning vector pMW118

    Cloning vector pMW118

    • Public DB hit
      GI:67423788
      AB005475
    • Hit length
      4,211 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      34.42%
    • Alignment (schematic)

      SEQ ID NO 3
      34.42% cov
      AB005475
      50.44% cov
    • Alignment Length
      2,124 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
6,716
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Size marker plasmid pKF339

    Size marker plasmid pKF339

    • Public DB hit
      GI:1208491
      D45834
    • Hit length
      11,943 bp
    • E Value
      0E0
    • BLAST Score
      4,082.2 bits
    • Similarity
      99.95%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      D45834
      18.53% cov
    • Alignment Length
      2,213 bp
    • CIGAR string
      4503H1297MN915M mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector pAmin81

    Cloning vector pAmin81

    • Public DB hit
      GI:334306144
      HQ283398
    • Hit length
      3,654 bp
    • E Value
      0E0
    • BLAST Score
      4,073 bits
    • Similarity
      99.86%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      HQ283398
      60.65% cov
    • Alignment Length
      2,216 bp
    • CIGAR string
      4503H73M3I2140M mismatches: 0 - insertions: 3 - deletions: 0
  • Single-copy integration vector pLL39

    Single-copy integration vector pLL39

    • Public DB hit
      GI:146330301
      EF540896
    • Hit length
      8,019 bp
    • E Value
      0E0
    • BLAST Score
      4,067.4 bits
    • Similarity
      99.82%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      EF540896
      27.63% cov
    • Alignment Length
      2,216 bp
    • CIGAR string
      4503H73M3I1552MN587M mismatches: 1 - insertions: 3 - deletions: 0
  • Single-copy integtation vector pLL29

    Single-copy integtation vector pLL29

    • Public DB hit
      GI:146330297
      EF540895
    • Hit length
      7,029 bp
    • E Value
      0E0
    • BLAST Score
      4,067.4 bits
    • Similarity
      99.82%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      EF540895
      31.53% cov
    • Alignment Length
      2,216 bp
  • Single-copy integration vector pCL25

    Single-copy integration vector pCL25

    • Public DB hit
      GI:146330293
      EF540894
    • Hit length
      6,624 bp
    • E Value
      0E0
    • BLAST Score
      4,067.4 bits
    • Similarity
      99.82%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      EF540894
      33.45% cov
    • Alignment Length
      2,216 bp
  • HIS3/URA3 reporter vector pH3U3

    HIS3/URA3 reporter vector pH3U3

    • Public DB hit
      GI:94963135
      DQ515893
    • Hit length
      5,834 bp
    • E Value
      0E0
    • BLAST Score
      4,065.6 bits
    • Similarity
      99.82%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      DQ515893
      37.93% cov
    • Alignment Length
      2,213 bp
  • Expression vector pZS4Int-1

    Expression vector pZS4Int-1

    • Public DB hit
      GI:2315854
      U66308
    • Hit length
      6,000 bp
    • E Value
      0E0
    • BLAST Score
      4,065.6 bits
    • Similarity
      99.82%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      U66308
      36.88% cov
    • Alignment Length
      2,213 bp
  • Salmonella enterica subsp. enterica serovar Typhimurium

    Salmonella enterica subsp. enterica serovar Typhimurium

    • Public DB hit
      GI:47833
      X01654
    • Hit length
      9,263 bp
    • E Value
      0E0
    • BLAST Score
      4,065.6 bits
    • Similarity
      99.82%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      X01654
      23.89% cov
    • Alignment Length
      2,213 bp
  • uncultured bacterium

    uncultured bacterium

    • Public DB hit
      GI:204789630
      FJ158001
    • Hit length
      9,323 bp
    • E Value
      0E0
    • BLAST Score
      4,061.9 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      FJ158001
      23.77% cov
    • Alignment Length
      2,216 bp
  • Cloning vector pMAK705

    Cloning vector pMAK705

    • Public DB hit
      GI:21617574
      AF519766
    • Hit length
      5,593 bp
    • E Value
      0E0
    • BLAST Score
      4,061.9 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AF519766
      39.62% cov
    • Alignment Length
      2,216 bp
  • Cloning vector pSC101BADgbaA-ISceI(amp)

    Cloning vector pSC101BADgbaA-ISceI(amp)

    • Public DB hit
      GI:138754318
      AM403094
    • Hit length
      10,672 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AM403094
      20.74% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINTs-Kan2

    Cloning vector pBRINTs-Kan2

    • Public DB hit
      GI:11061062
      AJ278280
    • Hit length
      8,405 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AJ278280
      26.33% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINTs-Gen4

    Cloning vector pBRINTs-Gen4

    • Public DB hit
      GI:11061053
      AJ278279
    • Hit length
      8,017 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AJ278279
      27.6% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINTs-Cat2

    Cloning vector pBRINTs-Cat2

    • Public DB hit
      GI:11061044
      AJ278278
    • Hit length
      8,201 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AJ278278
      26.98% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINT-TsKm

    Cloning vector pBRINT-TsKm

    • Public DB hit
      GI:8250032
      AJ278283
    • Hit length
      8,310 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AJ278283
      26.63% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINT-TsGm

    Cloning vector pBRINT-TsGm

    • Public DB hit
      GI:8250026
      AJ278282
    • Hit length
      7,922 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AJ278282
      27.93% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pBRINT-TsCm

    Cloning vector pBRINT-TsCm

    • Public DB hit
      GI:8250016
      AJ278281
    • Hit length
      8,094 bp
    • E Value
      0E0
    • BLAST Score
      4,060.1 bits
    • Similarity
      99.77%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      AJ278281
      27.34% cov
    • Alignment Length
      2,213 bp
  • Cloning vector pCL1920

    Cloning vector pCL1920

    • Public DB hit
      GI:77799775
      AB236930
    • Hit length
      4,549 bp
    • E Value
      0E0
    • BLAST Score
      4,047.1 bits
    • Similarity
      99.86%
    • Coverage
      32.74%
    • Alignment (schematic)

      SEQ ID NO 4
      32.74% cov
      AB236930
      48.41% cov
    • Alignment Length
      2,202 bp
  • Cloning vector pAmin82

    Cloning vector pAmin82

    • Public DB hit
      GI:334306142
      HQ283397
    • Hit length
      3,654 bp
    • E Value
      0E0
    • BLAST Score
      4,045.3 bits
    • Similarity
      99.64%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      HQ283397
      60.65% cov
    • Alignment Length
      2,216 bp
  • Expression vector pUHS*2Plac/ara-1 MCS1

    Expression vector pUHS*2Plac/ara-1 MCS1

    • Public DB hit
      GI:2315859
      U66313
    • Hit length
      4,004 bp
    • E Value
      0E0
    • BLAST Score
      4,037.9 bits
    • Similarity
      99.59%
    • Coverage
      32.95%
    • Alignment (schematic)

      SEQ ID NO 4
      32.95% cov
      U66313
      55.27% cov
    • Alignment Length
      2,213 bp
  • Tn7 delivery vector pGRG36

    Tn7 delivery vector pGRG36

    • Public DB hit
      GI:92429681
      DQ460223
    • Hit length
      12,549 bp
    • E Value
      0E0
    • BLAST Score
      3,927.1 bits
    • Similarity
      99.91%
    • Coverage
      31.75%
    • Alignment (schematic)

      SEQ ID NO 4
      31.75% cov
      DQ460223
      16.99% cov
    • Alignment Length
      2,132 bp
  • Cloning vector pMW219

    Cloning vector pMW219

    • Public DB hit
      GI:67968380
      AB005478
    • Hit length
      3,923 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      31.63%
    • Alignment (schematic)

      SEQ ID NO 4
      31.63% cov
      AB005478
      54.14% cov
    • Alignment Length
      2,124 bp
  • Cloning vector pMW218

    Cloning vector pMW218

    • Public DB hit
      GI:67968378
      AB005477
    • Hit length
      3,923 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      31.63%
    • Alignment (schematic)

      SEQ ID NO 4
      31.63% cov
      AB005477
      54.14% cov
    • Alignment Length
      2,124 bp
  • Cloning vector pMW119

    Cloning vector pMW119

    • Public DB hit
      GI:67968376
      AB005476
    • Hit length
      4,211 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      31.63%
    • Alignment (schematic)

      SEQ ID NO 4
      31.63% cov
      AB005476
      50.44% cov
    • Alignment Length
      2,124 bp
  • Cloning vector pMW118

    Cloning vector pMW118

    • Public DB hit
      GI:67423788
      AB005475
    • Hit length
      4,211 bp
    • E Value
      0E0
    • BLAST Score
      3,912.3 bits
    • Similarity
      99.91%
    • Coverage
      31.63%
    • Alignment (schematic)

      SEQ ID NO 4
      31.63% cov
      AB005475
      50.44% cov
    • Alignment Length
      2,124 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
5,676
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      CP001396
      0.04% cov
    • Alignment Length
      1,938 bp
    • CIGAR string
      22H518MN1419M3716H mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector lambdaS2775

    Cloning vector lambdaS2775

    • Public DB hit
      GI:186702979
      EU421722
    • Hit length
      37,769 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      EU421722
      5.13% cov
    • Alignment Length
      1,938 bp
    • CIGAR string
      22H518MN1419M3716H mismatches: 1 - insertions: 0 - deletions: 0
  • Red-recombineering helper plasmid RSFRedkan

    Red-recombineering helper plasmid RSFRedkan

    • Public DB hit
      GI:210076661
      FJ347162
    • Hit length
      11,037 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      FJ347162
      17.56% cov
    • Alignment Length
      1,938 bp
    • CIGAR string
      22H518MN1419M3716H mismatches: 1 - insertions: 0 - deletions: 0
  • Red-recombineering helper plasmid RSFRedTER

    Red-recombineering helper plasmid RSFRedTER

    • Public DB hit
      GI:210076654
      FJ347161
    • Hit length
      12,576 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      FJ347161
      15.41% cov
    • Alignment Length
      1,938 bp
  • Red recombinase plasmid pKD46

    Red recombinase plasmid pKD46

    • Public DB hit
      GI:15554345
      AY048746
    • Hit length
      6,329 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      AY048746
      30.62% cov
    • Alignment Length
      1,938 bp
  • Enterobacteria phage lambda

    Enterobacteria phage lambda

    • Public DB hit
      GI:215104
      J02459
    • Hit length
      48,502 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      J02459
      4% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-3

    Cloning vector TLF97-3

    • Public DB hit
      GI:1066312
      U39286
    • Hit length
      42,531 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      U39286
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-2

    Cloning vector TLF97-2

    • Public DB hit
      GI:1066308
      U39285
    • Hit length
      42,530 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      U39285
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-1

    Cloning vector TLF97-1

    • Public DB hit
      GI:1066304
      U39284
    • Hit length
      42,529 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      U39284
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector lambda TXF97

    Cloning vector lambda TXF97

    • Public DB hit
      GI:1051181
      U37692
    • Hit length
      42,704 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      U37692
      4.54% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      AM946981
      0.04% cov
    • Alignment Length
      1,938 bp
  • Enterobacteria phage DE3

    Enterobacteria phage DE3

    • Public DB hit
      GI:194021541
      EU078592
    • Hit length
      42,925 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      EU078592
      4.51% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      CP001665
      0.04% cov
    • Alignment Length
      1,938 bp
  • Cloning vector pKaKa1

    Cloning vector pKaKa1

    • Public DB hit
      GI:309274422
      GU074524
    • Hit length
      9,633 bp
    • E Value
      0E0
    • BLAST Score
      3,563.3 bits
    • Similarity
      99.85%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      GU074524
      20.12% cov
    • Alignment Length
      1,938 bp
  • Helper vector pTKRED

    Helper vector pTKRED

    • Public DB hit
      GI:284822307
      GU327533
    • Hit length
      10,726 bp
    • E Value
      0E0
    • BLAST Score
      3,443.3 bits
    • Similarity
      99.89%
    • Coverage
      32.96%
    • Alignment (schematic)

      SEQ ID NO 5
      32.96% cov
      GU327533
      17.43% cov
    • Alignment Length
      1,871 bp
  • Shuttle vector pUCP18-RedS

    Shuttle vector pUCP18-RedS

    • Public DB hit
      GI:154918186
      EU073163
    • Hit length
      9,659 bp
    • E Value
      0E0
    • BLAST Score
      3,393.4 bits
    • Similarity
      99.95%
    • Coverage
      32.42%
    • Alignment (schematic)

      SEQ ID NO 5
      32.42% cov
      EU073163
      19.05% cov
    • Alignment Length
      1,840 bp
  • Broad host range Red recombinase vector pRKaraRed

    Broad host range Red recombinase vector pRKaraRed

    • Public DB hit
      GI:298108757
      GU186864
    • Hit length
      10,903 bp
    • E Value
      0E0
    • BLAST Score
      3,363.9 bits
    • Similarity
      99.84%
    • Coverage
      32.26%
    • Alignment (schematic)

      SEQ ID NO 5
      32.26% cov
      GU186864
      16.78% cov
    • Alignment Length
      1,831 bp
  • Broad host range Red recombinase expression vector pRKcIRed

    Broad host range Red recombinase expression vector pRKcIRed

    • Public DB hit
      GI:55975978
      AY820185
    • Hit length
      10,790 bp
    • E Value
      0E0
    • BLAST Score
      3,363.9 bits
    • Similarity
      99.84%
    • Coverage
      32.26%
    • Alignment (schematic)

      SEQ ID NO 5
      32.26% cov
      AY820185
      16.96% cov
    • Alignment Length
      1,831 bp
  • Red recombinase plasmid pKD20

    Red recombinase plasmid pKD20

    • Public DB hit
      GI:15554338
      AY048745
    • Hit length
      6,078 bp
    • E Value
      0E0
    • BLAST Score
      3,360.2 bits
    • Similarity
      99.95%
    • Coverage
      32.1%
    • Alignment (schematic)

      SEQ ID NO 5
      32.1% cov
      AY048745
      29.98% cov
    • Alignment Length
      1,822 bp
  • Cloning vector pKaKa2

    Cloning vector pKaKa2

    • Public DB hit
      GI:309274431
      GU074525
    • Hit length
      18,909 bp
    • E Value
      0E0
    • BLAST Score
      3,356.5 bits
    • Similarity
      99.78%
    • Coverage
      32.22%
    • Alignment (schematic)

      SEQ ID NO 5
      32.22% cov
      GU074525
      9.67% cov
    • Alignment Length
      1,829 bp
  • Cloning vector pSC101BADgbaA-ISceI(amp)

    Cloning vector pSC101BADgbaA-ISceI(amp)

    • Public DB hit
      GI:138754318
      AM403094
    • Hit length
      10,672 bp
    • E Value
      0E0
    • BLAST Score
      3,356.5 bits
    • Similarity
      99.95%
    • Coverage
      32.06%
    • Alignment (schematic)

      SEQ ID NO 5
      32.06% cov
      AM403094
      17.05% cov
    • Alignment Length
      1,820 bp
  • Escherichia coli 536

    Escherichia coli 536

    • Public DB hit
      GI:110341805
      CP000247
    • Hit length
      4,938,920 bp
    • E Value
      0E0
    • BLAST Score
      3,347.2 bits
    • Similarity
      97.83%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      CP000247
      0.04% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli UMN026

    Escherichia coli UMN026

    • Public DB hit
      GI:218430358
      CU928163
    • Hit length
      5,202,090 bp
    • E Value
      0E0
    • BLAST Score
      3,336.2 bits
    • Similarity
      97.73%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      CU928163
      0.04% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      3,336.2 bits
    • Similarity
      97.73%
    • Coverage
      34.14%
    • Alignment (schematic)

      SEQ ID NO 5
      34.14% cov
      CU928145
      0.04% cov
    • Alignment Length
      1,939 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
6,221
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      CP001396
      0.04% cov
    • Alignment Length
      1,938 bp
    • CIGAR string
      22H518MN1419M4261H mismatches: 1 - insertions: 0 - deletions: 0
  • Cloning vector lambdaS2775

    Cloning vector lambdaS2775

    • Public DB hit
      GI:186702979
      EU421722
    • Hit length
      37,769 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      EU421722
      5.13% cov
    • Alignment Length
      1,938 bp
    • CIGAR string
      22H518MN1419M4261H mismatches: 1 - insertions: 0 - deletions: 0
  • Red-recombineering helper plasmid RSFRedkan

    Red-recombineering helper plasmid RSFRedkan

    • Public DB hit
      GI:210076661
      FJ347162
    • Hit length
      11,037 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      FJ347162
      17.56% cov
    • Alignment Length
      1,938 bp
    • CIGAR string
      22H518MN1419M4261H mismatches: 1 - insertions: 0 - deletions: 0
  • Red-recombineering helper plasmid RSFRedTER

    Red-recombineering helper plasmid RSFRedTER

    • Public DB hit
      GI:210076654
      FJ347161
    • Hit length
      12,576 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      FJ347161
      15.41% cov
    • Alignment Length
      1,938 bp
  • Red recombinase plasmid pKD46

    Red recombinase plasmid pKD46

    • Public DB hit
      GI:15554345
      AY048746
    • Hit length
      6,329 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      AY048746
      30.62% cov
    • Alignment Length
      1,938 bp
  • Enterobacteria phage lambda

    Enterobacteria phage lambda

    • Public DB hit
      GI:215104
      J02459
    • Hit length
      48,502 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      J02459
      4% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-3

    Cloning vector TLF97-3

    • Public DB hit
      GI:1066312
      U39286
    • Hit length
      42,531 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      U39286
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-2

    Cloning vector TLF97-2

    • Public DB hit
      GI:1066308
      U39285
    • Hit length
      42,530 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      U39285
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-1

    Cloning vector TLF97-1

    • Public DB hit
      GI:1066304
      U39284
    • Hit length
      42,529 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      U39284
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector lambda TXF97

    Cloning vector lambda TXF97

    • Public DB hit
      GI:1051181
      U37692
    • Hit length
      42,704 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      U37692
      4.54% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      AM946981
      0.04% cov
    • Alignment Length
      1,938 bp
  • Enterobacteria phage DE3

    Enterobacteria phage DE3

    • Public DB hit
      GI:194021541
      EU078592
    • Hit length
      42,925 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      EU078592
      4.51% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      CP001665
      0.04% cov
    • Alignment Length
      1,938 bp
  • Cloning vector pKaKa1

    Cloning vector pKaKa1

    • Public DB hit
      GI:309274422
      GU074524
    • Hit length
      9,633 bp
    • E Value
      0E0
    • BLAST Score
      3,563.3 bits
    • Similarity
      99.85%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      GU074524
      20.12% cov
    • Alignment Length
      1,938 bp
  • Helper vector pTKRED

    Helper vector pTKRED

    • Public DB hit
      GI:284822307
      GU327533
    • Hit length
      10,726 bp
    • E Value
      0E0
    • BLAST Score
      3,443.3 bits
    • Similarity
      99.89%
    • Coverage
      30.08%
    • Alignment (schematic)

      SEQ ID NO 6
      30.08% cov
      GU327533
      17.43% cov
    • Alignment Length
      1,871 bp
  • Shuttle vector pUCP18-RedS

    Shuttle vector pUCP18-RedS

    • Public DB hit
      GI:154918186
      EU073163
    • Hit length
      9,659 bp
    • E Value
      0E0
    • BLAST Score
      3,393.4 bits
    • Similarity
      99.95%
    • Coverage
      29.58%
    • Alignment (schematic)

      SEQ ID NO 6
      29.58% cov
      EU073163
      19.05% cov
    • Alignment Length
      1,840 bp
  • Broad host range Red recombinase vector pRKaraRed

    Broad host range Red recombinase vector pRKaraRed

    • Public DB hit
      GI:298108757
      GU186864
    • Hit length
      10,903 bp
    • E Value
      0E0
    • BLAST Score
      3,363.9 bits
    • Similarity
      99.84%
    • Coverage
      29.43%
    • Alignment (schematic)

      SEQ ID NO 6
      29.43% cov
      GU186864
      16.78% cov
    • Alignment Length
      1,831 bp
  • Broad host range Red recombinase expression vector pRKcIRed

    Broad host range Red recombinase expression vector pRKcIRed

    • Public DB hit
      GI:55975978
      AY820185
    • Hit length
      10,790 bp
    • E Value
      0E0
    • BLAST Score
      3,363.9 bits
    • Similarity
      99.84%
    • Coverage
      29.43%
    • Alignment (schematic)

      SEQ ID NO 6
      29.43% cov
      AY820185
      16.96% cov
    • Alignment Length
      1,831 bp
  • Red recombinase plasmid pKD20

    Red recombinase plasmid pKD20

    • Public DB hit
      GI:15554338
      AY048745
    • Hit length
      6,078 bp
    • E Value
      0E0
    • BLAST Score
      3,360.2 bits
    • Similarity
      99.95%
    • Coverage
      29.29%
    • Alignment (schematic)

      SEQ ID NO 6
      29.29% cov
      AY048745
      29.98% cov
    • Alignment Length
      1,822 bp
  • Cloning vector pKaKa2

    Cloning vector pKaKa2

    • Public DB hit
      GI:309274431
      GU074525
    • Hit length
      18,909 bp
    • E Value
      0E0
    • BLAST Score
      3,356.5 bits
    • Similarity
      99.78%
    • Coverage
      29.4%
    • Alignment (schematic)

      SEQ ID NO 6
      29.4% cov
      GU074525
      9.67% cov
    • Alignment Length
      1,829 bp
  • Cloning vector pSC101BADgbaA-ISceI(amp)

    Cloning vector pSC101BADgbaA-ISceI(amp)

    • Public DB hit
      GI:138754318
      AM403094
    • Hit length
      10,672 bp
    • E Value
      0E0
    • BLAST Score
      3,356.5 bits
    • Similarity
      99.95%
    • Coverage
      29.26%
    • Alignment (schematic)

      SEQ ID NO 6
      29.26% cov
      AM403094
      17.05% cov
    • Alignment Length
      1,820 bp
  • Escherichia coli 536

    Escherichia coli 536

    • Public DB hit
      GI:110341805
      CP000247
    • Hit length
      4,938,920 bp
    • E Value
      0E0
    • BLAST Score
      3,347.2 bits
    • Similarity
      97.83%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      CP000247
      0.04% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli UMN026

    Escherichia coli UMN026

    • Public DB hit
      GI:218430358
      CU928163
    • Hit length
      5,202,090 bp
    • E Value
      0E0
    • BLAST Score
      3,336.2 bits
    • Similarity
      97.73%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      CU928163
      0.04% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218350208
      CU928145
    • Hit length
      5,154,862 bp
    • E Value
      0E0
    • BLAST Score
      3,336.2 bits
    • Similarity
      97.73%
    • Coverage
      31.15%
    • Alignment (schematic)

      SEQ ID NO 6
      31.15% cov
      CU928145
      0.04% cov
    • Alignment Length
      1,939 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
6,435
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Cloning vector pRU1212

    Cloning vector pRU1212

    • Public DB hit
      GI:55724897
      AJ851293
    • Hit length
      14,829 bp
    • E Value
      0E0
    • BLAST Score
      4,446 bits
    • Similarity
      99%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AJ851293
      16.76% cov
    • Alignment Length
      2,489 bp
    • CIGAR string
      3957H228MNMN325MIM3I25M3I10MN238MN71MI94MN28MDMI38MNMD3MNMIM2N50MN1028MIMD18MN301M mismatches: 11 - insertions: 11 - deletions: 3
  • Cloning vector pRU1156

    Cloning vector pRU1156

    • Public DB hit
      GI:55724894
      AJ851292
    • Hit length
      13,116 bp
    • E Value
      0E0
    • BLAST Score
      4,446 bits
    • Similarity
      99%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AJ851292
      18.95% cov
    • Alignment Length
      2,489 bp
    • CIGAR string
      3957H228MNMN325MIM3I25M3I10MN238MN71MI94MN28MDMI38MNMD3MNMIM2N50MN1028MIMD18MN301M mismatches: 11 - insertions: 11 - deletions: 3
  • Cloning vector pRU1161

    Cloning vector pRU1161

    • Public DB hit
      GI:55724891
      AJ851291
    • Hit length
      13,079 bp
    • E Value
      0E0
    • BLAST Score
      4,446 bits
    • Similarity
      99%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AJ851291
      19.01% cov
    • Alignment Length
      2,489 bp
    • CIGAR string
      3957H228MNMN325MIM3I25M3I10MN238MN71MI94MN28MDMI38MNMD3MNMIM2N50MN1028MIMD18MN301M mismatches: 11 - insertions: 11 - deletions: 3
  • Cloning vector pRU1076

    Cloning vector pRU1076

    • Public DB hit
      GI:55724888
      AJ851290
    • Hit length
      13,079 bp
    • E Value
      0E0
    • BLAST Score
      4,446 bits
    • Similarity
      99%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AJ851290
      19.01% cov
    • Alignment Length
      2,489 bp
  • Cloning vector pRU1075

    Cloning vector pRU1075

    • Public DB hit
      GI:55724885
      AJ851289
    • Hit length
      13,079 bp
    • E Value
      0E0
    • BLAST Score
      4,446 bits
    • Similarity
      99%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AJ851289
      19.01% cov
    • Alignment Length
      2,489 bp
  • Cloning vector pRU1064

    Cloning vector pRU1064

    • Public DB hit
      GI:55724882
      AJ851288
    • Hit length
      13,103 bp
    • E Value
      0E0
    • BLAST Score
      4,446 bits
    • Similarity
      99%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AJ851288
      18.97% cov
    • Alignment Length
      2,489 bp
  • Cosmid vector pRR54

    Cosmid vector pRR54

    • Public DB hit
      GI:31745705
      AY297462
    • Hit length
      10,082 bp
    • E Value
      0E0
    • BLAST Score
      4,423.8 bits
    • Similarity
      98.84%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AY297462
      24.66% cov
    • Alignment Length
      2,490 bp
  • Cloning vector pMR10

    Cloning vector pMR10

    • Public DB hit
      GI:38343908
      AJ606312
    • Hit length
      8,798 bp
    • E Value
      0E0
    • BLAST Score
      4,422 bits
    • Similarity
      98.8%
    • Coverage
      38.51%
    • Alignment (schematic)

      SEQ ID NO 7
      38.51% cov
      AJ606312
      28.3% cov
    • Alignment Length
      2,493 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      CP001396
      0.04% cov
    • Alignment Length
      1,938 bp
  • Cloning vector lambdaS2775

    Cloning vector lambdaS2775

    • Public DB hit
      GI:186702979
      EU421722
    • Hit length
      37,769 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      EU421722
      5.13% cov
    • Alignment Length
      1,938 bp
  • Red-recombineering helper plasmid RSFRedkan

    Red-recombineering helper plasmid RSFRedkan

    • Public DB hit
      GI:210076661
      FJ347162
    • Hit length
      11,037 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      FJ347162
      17.56% cov
    • Alignment Length
      1,938 bp
  • Red-recombineering helper plasmid RSFRedTER

    Red-recombineering helper plasmid RSFRedTER

    • Public DB hit
      GI:210076654
      FJ347161
    • Hit length
      12,576 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      FJ347161
      15.41% cov
    • Alignment Length
      1,938 bp
  • Red recombinase plasmid pKD46

    Red recombinase plasmid pKD46

    • Public DB hit
      GI:15554345
      AY048746
    • Hit length
      6,329 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      AY048746
      30.62% cov
    • Alignment Length
      1,938 bp
  • Enterobacteria phage lambda

    Enterobacteria phage lambda

    • Public DB hit
      GI:215104
      J02459
    • Hit length
      48,502 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      J02459
      4% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-3

    Cloning vector TLF97-3

    • Public DB hit
      GI:1066312
      U39286
    • Hit length
      42,531 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      U39286
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-2

    Cloning vector TLF97-2

    • Public DB hit
      GI:1066308
      U39285
    • Hit length
      42,530 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      U39285
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector TLF97-1

    Cloning vector TLF97-1

    • Public DB hit
      GI:1066304
      U39284
    • Hit length
      42,529 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      U39284
      4.56% cov
    • Alignment Length
      1,938 bp
  • Cloning vector lambda TXF97

    Cloning vector lambda TXF97

    • Public DB hit
      GI:1051181
      U37692
    • Hit length
      42,704 bp
    • E Value
      0E0
    • BLAST Score
      3,574.4 bits
    • Similarity
      99.95%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      U37692
      4.54% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      AM946981
      0.04% cov
    • Alignment Length
      1,938 bp
  • Enterobacteria phage DE3

    Enterobacteria phage DE3

    • Public DB hit
      GI:194021541
      EU078592
    • Hit length
      42,925 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      EU078592
      4.51% cov
    • Alignment Length
      1,938 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      0E0
    • BLAST Score
      3,568.8 bits
    • Similarity
      99.9%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      CP001665
      0.04% cov
    • Alignment Length
      1,938 bp
  • Cloning vector pKaKa1

    Cloning vector pKaKa1

    • Public DB hit
      GI:309274422
      GU074524
    • Hit length
      9,633 bp
    • E Value
      0E0
    • BLAST Score
      3,563.3 bits
    • Similarity
      99.85%
    • Coverage
      30.12%
    • Alignment (schematic)

      SEQ ID NO 7
      30.12% cov
      GU074524
      20.12% cov
    • Alignment Length
      1,938 bp
  • Helper vector pTKRED

    Helper vector pTKRED

    • Public DB hit
      GI:284822307
      GU327533
    • Hit length
      10,726 bp
    • E Value
      0E0
    • BLAST Score
      3,443.3 bits
    • Similarity
      99.89%
    • Coverage
      29.08%
    • Alignment (schematic)

      SEQ ID NO 7
      29.08% cov
      GU327533
      17.43% cov
    • Alignment Length
      1,871 bp
  • Shuttle vector pUCP18-RedS

    Shuttle vector pUCP18-RedS

    • Public DB hit
      GI:154918186
      EU073163
    • Hit length
      9,659 bp
    • E Value
      0E0
    • BLAST Score
      3,393.4 bits
    • Similarity
      99.95%
    • Coverage
      28.59%
    • Alignment (schematic)

      SEQ ID NO 7
      28.59% cov
      EU073163
      19.05% cov
    • Alignment Length
      1,840 bp
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
3,914
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
4,459
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
237
Type
peptide
Locations
Detailed Description, Drawings

Declared organism:
Enterobacteria phage lambda

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:27261132
      AAN86071
    • Hit length
      367 aa
    • E Value
      3.28E-137
    • BLAST Score
      492.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAN86071
      64.58% cov
    • Alignment Length
      237 aa
    • CIGAR string
      237M mismatches: 0 - insertions: 0 - deletions: 0
  • Tyzzerella nexilis DSM 1787

    Tyzzerella nexilis DSM 1787

    • Public DB hit
      GI:210610265
      ZP_03288320
    • Hit length
      237 aa
    • E Value
      8.41E-137
    • BLAST Score
      490.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_03288320
      100% cov
    • Alignment Length
      237 aa
    • CIGAR string
      237M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pPL450

    Cloning vector pPL450

    • Public DB hit
      GI:87159694
      BAE79430
    • Hit length
      237 aa
    • E Value
      3.07E-136
    • BLAST Score
      489.2 bits
    • Similarity
      99.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BAE79430
      100% cov
    • Alignment Length
      237 aa
    • CIGAR string
      66MN170M mismatches: 1 - insertions: 0 - deletions: 0
  • Bifidobacterium bifidum NCIMB 41171

    Bifidobacterium bifidum NCIMB 41171

    • Public DB hit
      GI:224284017
      ZP_03647339
      1 of 2 hits reported for Bifidobacterium bifidum NCIMB 41171.
    • Hit length
      281 aa
    • E Value
      7.49E-136
    • BLAST Score
      487.6 bits
    • Similarity
      100%
    • Coverage
      98.73%
    • Alignment (schematic)

      SEQ ID NO 10
      98.73% cov
      ZP_03647339
      83.27% cov
    • Alignment Length
      234 aa
  • Enterobacteria phage lambda

    Enterobacteria phage lambda

    • Public DB hit
      GI:9626292
      NP_040628
      1 of 2 hits reported for Enterobacteria phage lambda.
    • Hit length
      237 aa
    • E Value
      8.78E-136
    • BLAST Score
      487.6 bits
    • Similarity
      99.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_040628
      100% cov
    • Alignment Length
      237 aa
  • Enterobacteria phage HK244

    Enterobacteria phage HK244

    • Public DB hit
      GI:133873987
      ABO40681
    • Hit length
      237 aa
    • E Value
      2.97E-135
    • BLAST Score
      485.7 bits
    • Similarity
      99.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABO40681
      100% cov
    • Alignment Length
      237 aa
  • Enterobacteria phage HK544

    Enterobacteria phage HK544

    • Public DB hit
      GI:133873970
      ABO40666
    • Hit length
      237 aa
    • E Value
      7.49E-135
    • BLAST Score
      484.6 bits
    • Similarity
      99.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABO40666
      100% cov
    • Alignment Length
      237 aa
  • Enterobacteria phage HK97

    Enterobacteria phage HK97

    • Public DB hit
      GI:9634163
      NP_037735
    • Hit length
      237 aa
    • E Value
      1.03E-134
    • BLAST Score
      483.8 bits
    • Similarity
      98.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_037735
      100% cov
    • Alignment Length
      237 aa
  • Enterobacteria phage HK542

    Enterobacteria phage HK542

    • Public DB hit
      GI:133873996
      ABO40689
    • Hit length
      237 aa
    • E Value
      1.8E-134
    • BLAST Score
      483 bits
    • Similarity
      98.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABO40689
      100% cov
    • Alignment Length
      237 aa
  • Escherichia coli 2362-75

    Escherichia coli 2362-75

    • Public DB hit
      GI:312965228
      ZP_07779464
    • Hit length
      237 aa
    • E Value
      2.45E-134
    • BLAST Score
      482.6 bits
    • Similarity
      98.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_07779464
      100% cov
    • Alignment Length
      237 aa
  • Escherichia coli MS 84-1

    Escherichia coli MS 84-1

    • Public DB hit
      GI:300907046
      ZP_07124714
    • Hit length
      237 aa
    • E Value
      6.45E-134
    • BLAST Score
      481.5 bits
    • Similarity
      98.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_07124714
      100% cov
    • Alignment Length
      237 aa
  • Escherichia coli MS 182-1

    Escherichia coli MS 182-1

    • Public DB hit
      GI:300922482
      ZP_07138595
    • Hit length
      237 aa
    • E Value
      7.43E-134
    • BLAST Score
      481.1 bits
    • Similarity
      98.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_07138595
      100% cov
    • Alignment Length
      237 aa
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15799951
      NP_285963
    • Hit length
      237 aa
    • E Value
      2.69E-133
    • BLAST Score
      479.2 bits
    • Similarity
      98.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_285963
      100% cov
    • Alignment Length
      237 aa
  • Enterobacteria phage mEp332

    Enterobacteria phage mEp332

    • Public DB hit
      GI:133873978
      ABO40673
    • Hit length
      237 aa
    • E Value
      1.89E-131
    • BLAST Score
      473 bits
    • Similarity
      97.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABO40673
      100% cov
    • Alignment Length
      237 aa
Occurrence
91 times in PatSeqDB
Tools
PatSeq Finder

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