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Data obtained from: DDBJ Pat NCBI GenBank EMBL-EBI Pat USPTO Fulltext
4 sequences found in this patent (in total)

Displaying 4 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
25
Type
DNA
Locations
Detailed Description

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002729
      0% cov
    • Alignment Length
      25 bp
    • CIGAR string
      25M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP012030
      0% cov
    • Alignment Length
      25 bp
    • CIGAR string
      25M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AM946981
      0% cov
    • Alignment Length
      25 bp
    • CIGAR string
      25M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FN649414
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001846
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FN554766
      0% cov
    • Alignment Length
      25 bp
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001383
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001368
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000819
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001665
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001396
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209774905
      EU903219
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,284 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EU903219
      1.95% cov
    • Alignment Length
      25 bp
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218368405
      CU928164
    • Hit length
      5,132,068 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CU928164
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001164
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli SMS-3-5

    Escherichia coli SMS-3-5

    • Public DB hit
      GI:170517292
      CP000970
    • Hit length
      5,068,389 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000970
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000948
      0% cov
    • Alignment Length
      25 bp
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000946
      0% cov
    • Alignment Length
      25 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:169212098
      EU477376
    • Hit length
      3,394 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EU477376
      0.74% cov
    • Alignment Length
      25 bp
  • Escherichia coli HS

    Escherichia coli HS

    • Public DB hit
      GI:157065147
      CP000802
    • Hit length
      4,643,538 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000802
      0% cov
    • Alignment Length
      25 bp
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
31
Type
DNA
Locations
Detailed Description

Declared organism:
Escherichia coli

Determined organism:
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,556
Type
DNA
Locations
Detailed Description

Declared organism:
Mannheimia haemolytica

Determined organism:
  • Mannheimia haemolytica

    Mannheimia haemolytica

    • Public DB hit
      GI:451484
      U03068
      1 of 13 hits reported for Mannheimia haemolytica.
    • Hit length
      1,556 bp
    • E Value
      0E0
    • BLAST Score
      2,874.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      U03068
      100% cov
    • Alignment Length
      1,556 bp
    • CIGAR string
      1556M mismatches: 0 - insertions: 0 - deletions: 0
  • Mannheimia glucosida

    Mannheimia glucosida

    • Public DB hit
      GI:61396487
      AY847808
      1 of 5 hits reported for Mannheimia glucosida.
    • Hit length
      1,239 bp
    • E Value
      0E0
    • BLAST Score
      1,816.4 bits
    • Similarity
      93.13%
    • Coverage
      79.95%
    • Alignment (schematic)

      SEQ ID NO 3
      79.95% cov
      AY847808
      99.92% cov
    • Alignment Length
      1,252 bp
  • Actinobacillus pleuropneumoniae serovar 3 str. JL03

    Actinobacillus pleuropneumoniae serovar 3 str. JL03

    • Public DB hit
      GI:165875558
      CP000687
    • Hit length
      2,242,062 bp
    • E Value
      0E0
    • BLAST Score
      872.7 bits
    • Similarity
      79.47%
    • Coverage
      82.9%
    • Alignment (schematic)

      SEQ ID NO 3
      82.9% cov
      CP000687
      0.06% cov
    • Alignment Length
      1,320 bp
  • Actinobacillus pleuropneumoniae serovar 7 str. AP76

    Actinobacillus pleuropneumoniae serovar 7 str. AP76

    • Public DB hit
      GI:189914400
      CP001091
    • Hit length
      2,331,981 bp
    • E Value
      0E0
    • BLAST Score
      834 bits
    • Similarity
      78.94%
    • Coverage
      82.9%
    • Alignment (schematic)

      SEQ ID NO 3
      82.9% cov
      CP001091
      0.05% cov
    • Alignment Length
      1,320 bp
  • Actinobacillus pleuropneumoniae serovar 5b str. L20

    Actinobacillus pleuropneumoniae serovar 5b str. L20

    • Public DB hit
      GI:126096280
      CP000569
    • Hit length
      2,274,482 bp
    • E Value
      0E0
    • BLAST Score
      822.9 bits
    • Similarity
      78.82%
    • Coverage
      82.9%
    • Alignment (schematic)

      SEQ ID NO 3
      82.9% cov
      CP000569
      0.06% cov
    • Alignment Length
      1,322 bp
  • Haemophilus parasuis SH0165

    Haemophilus parasuis SH0165

    • Public DB hit
      GI:219690483
      CP001321
    • Hit length
      2,269,156 bp
    • E Value
      0E0
    • BLAST Score
      800.7 bits
    • Similarity
      78.67%
    • Coverage
      81.94%
    • Alignment (schematic)

      SEQ ID NO 3
      81.94% cov
      CP001321
      0.06% cov
    • Alignment Length
      1,308 bp
  • Haemophilus parasuis

    Haemophilus parasuis

    • Public DB hit
      GI:164415615
      EU330194
    • Hit length
      3,842 bp
    • E Value
      0E0
    • BLAST Score
      795.2 bits
    • Similarity
      78.56%
    • Coverage
      81.94%
    • Alignment (schematic)

      SEQ ID NO 3
      81.94% cov
      EU330194
      32.95% cov
    • Alignment Length
      1,306 bp
  • Actinobacillus pleuropneumoniae

    Actinobacillus pleuropneumoniae

    • Public DB hit
      GI:3893082
      AJ012748
    • Hit length
      1,298 bp
    • E Value
      0E0
    • BLAST Score
      787.8 bits
    • Similarity
      78.52%
    • Coverage
      81.94%
    • Alignment (schematic)

      SEQ ID NO 3
      81.94% cov
      AJ012748
      97.38% cov
    • Alignment Length
      1,308 bp
  • Actinobacillus ureae ATCC 25976

    Actinobacillus ureae ATCC 25976

    • Public DB hit
      GI:55420324
      AY775559
    • Hit length
      1,018 bp
    • E Value
      0E0
    • BLAST Score
      734.2 bits
    • Similarity
      80.64%
    • Coverage
      62.72%
    • Alignment (schematic)

      SEQ ID NO 3
      62.72% cov
      AY775559
      95.87% cov
    • Alignment Length
      997 bp
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
434
Type
peptide
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Mannheimia haemolytica

    Mannheimia haemolytica

    • Public DB hit
      GI:451485
      AAA21529
      1 of 8 hits reported for Mannheimia haemolytica.
    • Hit length
      434 aa
    • E Value
      0E0
    • BLAST Score
      892.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAA21529
      100% cov
    • Alignment Length
      434 aa
    • CIGAR string
      434M mismatches: 0 - insertions: 0 - deletions: 0
  • Mannheimia haemolytica PHL213

    Mannheimia haemolytica PHL213

    • Public DB hit
      GI:254362177
      ZP_04978293
    • Hit length
      432 aa
    • E Value
      0E0
    • BLAST Score
      845.1 bits
    • Similarity
      98.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_04978293
      100% cov
    • Alignment Length
      435 aa
    • CIGAR string
      74MN84M3N99M2NI99M3D61MN7M mismatches: 7 - insertions: 1 - deletions: 3
  • Mannheimia haemolytica serotype A2 str. BOVINE

    Mannheimia haemolytica serotype A2 str. BOVINE

    • Public DB hit
      GI:261492461
      ZP_05989016
    • Hit length
      432 aa
    • E Value
      0E0
    • BLAST Score
      842.8 bits
    • Similarity
      97.93%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_05989016
      100% cov
    • Alignment Length
      435 aa
    • CIGAR string
      74MN84M3N26MN72M2NI99M3D61MN7M mismatches: 8 - insertions: 1 - deletions: 3
  • Mannheimia haemolytica serotype A2 str. OVINE

    Mannheimia haemolytica serotype A2 str. OVINE

    • Public DB hit
      GI:261494529
      ZP_05991014
    • Hit length
      432 aa
    • E Value
      0E0
    • BLAST Score
      837 bits
    • Similarity
      97.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_05991014
      100% cov
    • Alignment Length
      435 aa
  • Mannheimia glucosida

    Mannheimia glucosida

    • Public DB hit
      GI:61396488
      AAX45943
      1 of 5 hits reported for Mannheimia glucosida.
    • Hit length
      413 aa
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      97.36%
    • Coverage
      95.62%
    • Alignment (schematic)

      SEQ ID NO 4
      95.62% cov
      AAX45943
      100% cov
    • Alignment Length
      416 aa
  • Actinobacillus minor NM305

    Actinobacillus minor NM305

    • Public DB hit
      GI:240949164
      ZP_04753511
    • Hit length
      432 aa
    • E Value
      0E0
    • BLAST Score
      753.8 bits
    • Similarity
      93.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_04753511
      99.77% cov
    • Alignment Length
      435 aa
  • Actinobacillus minor 202

    Actinobacillus minor 202

    • Public DB hit
      GI:223041457
      ZP_03611660
    • Hit length
      432 aa
    • E Value
      0E0
    • BLAST Score
      752.3 bits
    • Similarity
      92.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_03611660
      99.77% cov
    • Alignment Length
      435 aa
  • Haemophilus parasuis 29755

    Haemophilus parasuis 29755

    • Public DB hit
      GI:167855567
      ZP_02478328
    • Hit length
      437 aa
    • E Value
      0E0
    • BLAST Score
      738.8 bits
    • Similarity
      91.2%
    • Coverage
      99.31%
    • Alignment (schematic)

      SEQ ID NO 4
      99.31% cov
      ZP_02478328
      97.94% cov
    • Alignment Length
      432 aa
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder

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