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Search for Biological Sequences disclosed in Patents

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Data obtained from: EPO Sequence Listings
301 sequences found in this patent (in total)

Displaying 1 - 10 of 301 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
630
Type
DNA
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:186510185
      NM_112684
      1 of 7 hits reported for Arabidopsis thaliana.
    • Hit length
      1,192 bp
    • E Value
      0E0
    • BLAST Score
      1,164.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_112684
      52.85% cov
    • Alignment Length
      630 bp
    • CIGAR string
      630M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834709
      XM_002885191
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      919 bp
    • E Value
      0E0
    • BLAST Score
      1,042.6 bits
    • Similarity
      96.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002885191
      68.55% cov
    • Alignment Length
      632 bp
    • CIGAR string
      29MN8MN14MN17MN14MN29MN5MN20MN8MN3MN13MN65MN89MI2MD65MN18MN56MN45MD3MI13MN8MN70MN16M mismatches: 18 - insertions: 2 - deletions: 2
  • Glycine max

    Glycine max

    • Public DB hit
      GI:255636753
      BT094392
    • Hit length
      1,331 bp
    • E Value
      7.71E-64
    • BLAST Score
      254.1 bits
    • Similarity
      75.57%
    • Coverage
      87.94%
    • Alignment (schematic)

      SEQ ID NO 1
      87.94% cov
      BT094392
      41.62% cov
    • Alignment Length
      569 bp
    • CIGAR string
      51H8MN2MDMIMN5MN5MN5MN2MN2MN5M2N7MDN2MI5MN2MN5MN3MNMN11MN2MN5MN2M2D2MNMIN2MNMIN4MNMN6MNMN4MIMNMDN2M2NMI4MDMN2MN2MNMN3MN2MN2MN5MN14MN5MN2MDMIMN6M2N3MN8MN6MNMDMI2N5MN3MNM2NMN5MN5MN2MN2MN2MN4MI4MD14MN3MD2MI5MN5MN2MN2MN2MN3MNMN5MN8MNMN3MN3MNMN8MN5MN5MN29M2N5MD2M2ND4M2I7MN2MN2MN2M2NMN2MN2MN2MN3MNMNMIMD5MND2MI2MN5MN2MN2MN2MN5MN2MN8MN6MIMND2MN2MN2MN5MN2MN7M2N5M2N7M25H mismatches: 109 - insertions: 15 - deletions: 15
Occurrence
16 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
209
Type
peptide
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15229569
      NP_188430
      1 of 4 hits reported for Arabidopsis thaliana.
    • Hit length
      209 aa
    • E Value
      3.75E-120
    • BLAST Score
      435.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_188430
      100% cov
    • Alignment Length
      209 aa
    • CIGAR string
      209M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834710
      XP_002885237
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      209 aa
    • E Value
      8.87E-119
    • BLAST Score
      430.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002885237
      100% cov
    • Alignment Length
      209 aa
    • CIGAR string
      9MN42MN78MN72MN4M mismatches: 4 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255570655
      XP_002526282
    • Hit length
      212 aa
    • E Value
      7.42E-99
    • BLAST Score
      364.4 bits
    • Similarity
      91.22%
    • Coverage
      98.09%
    • Alignment (schematic)

      SEQ ID NO 2
      98.09% cov
      XP_002526282
      96.7% cov
    • Alignment Length
      205 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:118483279
      ABK93542
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      217 aa
    • E Value
      4.29E-94
    • BLAST Score
      348.6 bits
    • Similarity
      95.7%
    • Coverage
      89%
    • Alignment (schematic)

      SEQ ID NO 2
      89% cov
      ABK93542
      85.71% cov
    • Alignment Length
      186 aa
  • Glycine max

    Glycine max

    • Public DB hit
      GI:255636754
      ACU18711
      1 of 2 hits reported for Glycine max.
    • Hit length
      214 aa
    • E Value
      4.47E-94
    • BLAST Score
      348.6 bits
    • Similarity
      91.28%
    • Coverage
      93.3%
    • Alignment (schematic)

      SEQ ID NO 2
      93.3% cov
      ACU18711
      91.12% cov
    • Alignment Length
      195 aa
  • Cucumis melo subsp. melo

    Cucumis melo subsp. melo

    • Public DB hit
      GI:307136125
      ADN33971
    • Hit length
      212 aa
    • E Value
      7.82E-93
    • BLAST Score
      344.4 bits
    • Similarity
      88.67%
    • Coverage
      97.13%
    • Alignment (schematic)

      SEQ ID NO 2
      97.13% cov
      ADN33971
      95.75% cov
    • Alignment Length
      203 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225456777
      XP_002276829
      1 of 3 hits reported for Vitis vinifera.
    • Hit length
      214 aa
    • E Value
      2.58E-89
    • BLAST Score
      332.8 bits
    • Similarity
      89.8%
    • Coverage
      93.78%
    • Alignment (schematic)

      SEQ ID NO 2
      93.78% cov
      XP_002276829
      91.59% cov
    • Alignment Length
      196 aa
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242095048
      XP_002438014
    • Hit length
      220 aa
    • E Value
      1.69E-85
    • BLAST Score
      320.1 bits
    • Similarity
      87.56%
    • Coverage
      92.34%
    • Alignment (schematic)

      SEQ ID NO 2
      92.34% cov
      XP_002438014
      87.73% cov
    • Alignment Length
      193 aa
Occurrence
65 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
37
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
33
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
1,243
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:37726101
      AY166659
    • Hit length
      2,411 bp
    • E Value
      0E0
    • BLAST Score
      2,279.9 bits
    • Similarity
      99.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY166659
      51.56% cov
    • Alignment Length
      1,243 bp
    • CIGAR string
      755MN303MN58MN124M mismatches: 3 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:20198551
      AC020666
    • Hit length
      158,550 bp
    • E Value
      0E0
    • BLAST Score
      2,274.3 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AC020666
      0.78% cov
    • Alignment Length
      1,244 bp
    • CIGAR string
      755MN303MN58MN82MI42M mismatches: 3 - insertions: 1 - deletions: 0
Occurrence
48 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
34
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
98
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
171
Type
peptide
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15229569
      NP_188430
      1 of 4 hits reported for Arabidopsis thaliana.
    • Hit length
      209 aa
    • E Value
      1.1E-121
    • BLAST Score
      353.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_188430
      81.82% cov
    • Alignment Length
      171 aa
    • CIGAR string
      171M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297834710
      XP_002885237
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      209 aa
    • E Value
      7.71E-121
    • BLAST Score
      351.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002885237
      81.82% cov
    • Alignment Length
      171 aa
    • CIGAR string
      34MN78MN57M mismatches: 2 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255570655
      XP_002526282
    • Hit length
      212 aa
    • E Value
      1.81E-111
    • BLAST Score
      327.8 bits
    • Similarity
      95.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002526282
      80.66% cov
    • Alignment Length
      171 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:118483279
      ABK93542
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      217 aa
    • E Value
      5.74E-110
    • BLAST Score
      323.9 bits
    • Similarity
      96.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ABK93542
      78.8% cov
    • Alignment Length
      171 aa
  • Medicago truncatula

    Medicago truncatula

    • Public DB hit
      GI:357514735
      XP_003627656
      1 of 2 hits reported for Medicago truncatula.
    • Hit length
      212 aa
    • E Value
      4.6E-106
    • BLAST Score
      313.9 bits
    • Similarity
      93.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003627656
      80.66% cov
    • Alignment Length
      171 aa
  • Glycine max

    Glycine max

    • Public DB hit
      GI:359807604
      NP_001240905
      1 of 2 hits reported for Glycine max.
    • Hit length
      214 aa
    • E Value
      4.97E-106
    • BLAST Score
      313.9 bits
    • Similarity
      92.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001240905
      79.91% cov
    • Alignment Length
      171 aa
  • Cucumis melo subsp. melo

    Cucumis melo subsp. melo

    • Public DB hit
      GI:307136125
      ADN33971
    • Hit length
      212 aa
    • E Value
      2.16E-105
    • BLAST Score
      312 bits
    • Similarity
      92.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ADN33971
      80.66% cov
    • Alignment Length
      171 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225456777
      XP_002276829
    • Hit length
      214 aa
    • E Value
      6.05E-103
    • BLAST Score
      306.2 bits
    • Similarity
      92.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002276829
      79.91% cov
    • Alignment Length
      171 aa
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
606
Type
DNA
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:334183166
      NM_202265
      1 of 5 hits reported for Arabidopsis thaliana.
    • Hit length
      644 bp
    • E Value
      0E0
    • BLAST Score
      1,120.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_202265
      94.1% cov
    • Alignment Length
      606 bp
    • CIGAR string
      606M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297852477
      XM_002894074
    • Hit length
      1,272 bp
    • E Value
      0E0
    • BLAST Score
      966.9 bits
    • Similarity
      95.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002894074
      47.88% cov
    • Alignment Length
      610 bp
    • CIGAR string
      9MN16MIM2I42MN16MN41MN5MN3MN4MN2MN23MN2MNMI2MD58MN2MN119MN17MN6MN58MN23MN2MN35MN8MN41MN17MN14MN15M mismatches: 23 - insertions: 4 - deletions: 1
  • Solanum lycopersicum

    Solanum lycopersicum

    • Public DB hit
      GI:225314468
      AK327818
    • Hit length
      1,008 bp
    • E Value
      1.2E-81
    • BLAST Score
      313.2 bits
    • Similarity
      77.58%
    • Coverage
      89.27%
    • Alignment (schematic)

      SEQ ID NO 9
      89.27% cov
      AK327818
      53.67% cov
    • Alignment Length
      553 bp
    • CIGAR string
      33H7MI2MDMN2MN2MN29MNDMI6MN2MNMN6MN2MN8MN5MN5MN2MN2M2NMN3MNMN5MI2MD4MNMN2MN3MN4MN2MN2M2NMI2MD3MNMN3MN5MN5MN2MN8MNMD2MI4MN12M3N2MN2MN2MN2MN6MNMIMDMN9MN5MNMN5MN8MN2MN6MI2MNMND8MN5M2N10MD2MNI2MN2MN2MN2MN3MN10MN2MNM2N5MNI2MD5MN5MN2MN5MN2MN11MN5MN11MN6MNM2NM2N7MN9MNMN2MN2MN2MN2MDMIM2I3MN4M2D2MN2MN8MN2MN2MN8MN8MN8MN2MN2MN2MN5MN5MN4M2N7M32H mismatches: 100 - insertions: 12 - deletions: 12
  • Glycine max

    Glycine max

    • Public DB hit
      GI:255636753
      BT094392
    • Hit length
      1,331 bp
    • E Value
      9.64E-58
    • BLAST Score
      233.8 bits
    • Similarity
      75.09%
    • Coverage
      91.58%
    • Alignment (schematic)

      SEQ ID NO 9
      91.58% cov
      BT094392
      41.7% cov
    • Alignment Length
      574 bp
    • CIGAR string
      25H10MN2MNMI2MD4MN5MN5MN5MN3MNM2NMIN2MN2MI2M2D5MN2MN11MN8MN2MN2MD2MI3MN2M2NMN2MD2MNMIN4MNMIMD5MN6MNMNMN2M2NMN2MDMI2MN4MDMNMD8M2I5MN14MN5MN2MD3MI6M3N2MN5MN2MN4MI2MDMDMI2N5MN3MNMN3MN4MN5MN2MN2MN2MN4MIMN2MDMN12MN5MN5MN6MI2MD8MN2M2N4MN5MN2MN5MN2MN2MN11MN2MN32MN2MN5MND2MNI3MNDMI7MN5MN2M2NMN2MN2MN2MN2M2NMNMIMD4M3NMN2MN5MN2MN2MN2MN5MN2MN8MN2MN3MIMND5MN2MN5MN2MN2MN4M2N6MD3MI3M26H mismatches: 105 - insertions: 19 - deletions: 19
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
201
Type
peptide
Locations
Undetermined

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:8778701
      AAF79709
      1 of 4 hits reported for Arabidopsis thaliana.
    • Hit length
      464 aa
    • E Value
      1.12E-147
    • BLAST Score
      430.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAF79709
      43.32% cov
    • Alignment Length
      201 aa
    • CIGAR string
      201M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297852478
      XP_002894120
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      423 aa
    • E Value
      9.44E-143
    • BLAST Score
      416.4 bits
    • Similarity
      99.01%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002894120
      47.75% cov
    • Alignment Length
      202 aa
    • CIGAR string
      3MN6MI13MN22MN12MN68MN67MN4M mismatches: 6 - insertions: 1 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255570655
      XP_002526282
    • Hit length
      212 aa
    • E Value
      7.79E-117
    • BLAST Score
      342.4 bits
    • Similarity
      93.68%
    • Coverage
      94.53%
    • Alignment (schematic)

      SEQ ID NO 10
      94.53% cov
      XP_002526282
      89.62% cov
    • Alignment Length
      190 aa
  • Glycine max

    Glycine max

    • Public DB hit
      GI:359807604
      NP_001240905
      1 of 2 hits reported for Glycine max.
    • Hit length
      214 aa
    • E Value
      8.17E-117
    • BLAST Score
      342.4 bits
    • Similarity
      91.33%
    • Coverage
      97.51%
    • Alignment (schematic)

      SEQ ID NO 10
      97.51% cov
      NP_001240905
      91.59% cov
    • Alignment Length
      196 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:118483279
      ABK93542
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      217 aa
    • E Value
      5.92E-116
    • BLAST Score
      340.5 bits
    • Similarity
      92.71%
    • Coverage
      94.53%
    • Alignment (schematic)

      SEQ ID NO 10
      94.53% cov
      ABK93542
      88.48% cov
    • Alignment Length
      192 aa
  • Cucumis melo subsp. melo

    Cucumis melo subsp. melo

    • Public DB hit
      GI:307136125
      ADN33971
    • Hit length
      212 aa
    • E Value
      4.83E-114
    • BLAST Score
      335.5 bits
    • Similarity
      91.71%
    • Coverage
      96.02%
    • Alignment (schematic)

      SEQ ID NO 10
      96.02% cov
      ADN33971
      91.04% cov
    • Alignment Length
      193 aa
  • Medicago truncatula

    Medicago truncatula

    • Public DB hit
      GI:357514735
      XP_003627656
      1 of 2 hits reported for Medicago truncatula.
    • Hit length
      212 aa
    • E Value
      6.93E-114
    • BLAST Score
      335.1 bits
    • Similarity
      91.79%
    • Coverage
      96.52%
    • Alignment (schematic)

      SEQ ID NO 10
      96.52% cov
      XP_003627656
      91.98% cov
    • Alignment Length
      195 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225456777
      XP_002276829
    • Hit length
      214 aa
    • E Value
      2.2E-106
    • BLAST Score
      316.2 bits
    • Similarity
      88.54%
    • Coverage
      95.52%
    • Alignment (schematic)

      SEQ ID NO 10
      95.52% cov
      XP_002276829
      89.72% cov
    • Alignment Length
      192 aa
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder

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