Detection Of Immune Cells, In Particular T Cells Through Dna-methylation Analysis Of The Genes Ccr6 And Blr1

  • Published: Nov 3, 2011
  • Earliest Priority: Apr 29 2010
  • Family: 13
  • Cited Works: 61
  • Cited by: 3
  • Cites: 3
  • Sequences: 29
  • Additional Info: Cited Works Full text
Data obtained from: NCBI GenBank (EBI) EMBL-EBI Pat WIPO-PCT EPO Sequence Listings DDBJ Pat
29 sequences found in this patent (in total)

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Displaying 1 - 10 of 29 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
22
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Laccaria bicolor S238N-H82

    Laccaria bicolor S238N-H82

    • Public DB hit
      GI:170094861
      XM_001878617
      1 of 3 hits reported for Laccaria bicolor S238N-H82.
    • Hit length
      1,276 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 1
      90.91% cov
      XM_001878617
      1.57% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:298353140
      HM230423
    • Hit length
      92,657 bp
    • E Value
      5.45E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      HM230423
      0.02% cov
    • Alignment Length
      22 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
2
Length
23
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:351517738
      NW_003613811
    • Hit length
      2,045,362 bp
    • E Value
      1.33E-1
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      91.3%
    • Alignment (schematic)

      SEQ ID NO 2
      91.3% cov
      NW_003613811
      0% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M2H mismatches: 0 - insertions: 0 - deletions: 0
  • Medicago truncatula

    Medicago truncatula

    • Public DB hit
      GI:358342989
      NW_003763098
      1 of 2 hits reported for Medicago truncatula.
    • Hit length
      725,212 bp
    • E Value
      2.07E0
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NW_003763098
      0% cov
    • Alignment Length
      23 bp
  • Megachile rotundata

    Megachile rotundata

    • Public DB hit
      GI:383080219
      NW_003797501
    • Hit length
      4,956,680 bp
    • E Value
      2.07E0
    • BLAST Score
      38.2 bits
    • Similarity
      95.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NW_003797501
      0% cov
    • Alignment Length
      23 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
3
Length
22
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:116263265
      NW_001492255
    • Hit length
      35,476 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 3
      90.91% cov
      NW_001492255
      0.06% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Bombus impatiens

    Bombus impatiens

    • Public DB hit
      GI:348650000
      NT_177474
    • Hit length
      1,228,709 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 3
      90.91% cov
      NT_177474
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Bombus terrestris

    Bombus terrestris

    • Public DB hit
      GI:339751240
      NC_015774
      1 of 2 hits reported for Bombus terrestris.
    • Hit length
      9,884,808 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 3
      90.91% cov
      NC_015774
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M1H mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
4
Length
22
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:347617259
      NW_003534666
      1 of 3 hits reported for Sus scrofa.
    • Hit length
      190,090 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 4
      90.91% cov
      NW_003534666
      0.01% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224514932
      NT_008705
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      39,094,935 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 4
      90.91% cov
      NT_008705
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      2H20M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:90687134
      NW_001124107
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      10,142,329 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 4
      90.91% cov
      NW_001124107
      0% cov
    • Alignment Length
      20 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
5
Length
22
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:289738593
      NW_003183627
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      16,568,046 bp
    • E Value
      8.84E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      95.45%
    • Alignment (schematic)

      SEQ ID NO 5
      95.45% cov
      NW_003183627
      0% cov
    • Alignment Length
      21 bp
    • CIGAR string
      1H21M mismatches: 0 - insertions: 0 - deletions: 0
  • Apis florea

    Apis florea

    • Public DB hit
      GI:378860069
      NW_003791123
    • Hit length
      324,751 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 5
      90.91% cov
      NW_003791123
      0.01% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Thalassiosira pseudonana CCMP1335

    Thalassiosira pseudonana CCMP1335

    • Public DB hit
      GI:224006398
      NC_012071
    • Hit length
      1,267,198 bp
    • E Value
      3.49E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      90.91%
    • Alignment (schematic)

      SEQ ID NO 5
      90.91% cov
      NC_012071
      0% cov
    • Alignment Length
      20 bp
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
6
Length
23
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
7
Length
25
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Caenorhabditis elegans

    Caenorhabditis elegans

    • Public DB hit
      GI:392973747
      NC_003282
      1 of 2 hits reported for Caenorhabditis elegans.
    • Hit length
      17,493,793 bp
    • E Value
      8.73E-1
    • BLAST Score
      40.1 bits
    • Similarity
      95.83%
    • Coverage
      96%
    • Alignment (schematic)

      SEQ ID NO 7
      96% cov
      NC_003282
      0% cov
    • Alignment Length
      24 bp
    • CIGAR string
      1H5MN18M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
8
Length
22
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
9
Length
24
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
10
Length
22
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:342307092
      NM_001716
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      2,919 bp
    • E Value
      5.45E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_001716
      0.75% cov
    • Alignment Length
      22 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332837884
      XM_003313355
    • Hit length
      2,292 bp
    • E Value
      5.45E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_003313355
      0.96% cov
    • Alignment Length
      22 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332208421
      XM_003253254
    • Hit length
      3,216 bp
    • E Value
      5.45E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_003253254
      0.68% cov
    • Alignment Length
      22 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297690400
      XM_002822562
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,853 bp
    • E Value
      5.45E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_002822562
      0.77% cov
    • Alignment Length
      22 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297269351
      XM_001100017
    • Hit length
      1,747 bp
    • E Value
      5.45E0
    • BLAST Score
      36.2 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_001100017
      1.26% cov
    • Alignment Length
      22 bp
Occurrence
7 times in PatSeqDB
Tools

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