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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank EMBL-EBI Pat USPTO Fulltext
21 sequences found in this patent (in total)

Displaying 1 - 10 of 21 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
2,839
Type
DNA
Locations
Detailed Description, Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:3347856
      AF064019
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,839 bp
    • E Value
      0E0
    • BLAST Score
      5,243.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF064019
      100% cov
    • Alignment Length
      2,839 bp
    • CIGAR string
      2839M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
7 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
338
Type
peptide
Locations
Detailed Description, Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4758150
      NP_004393
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      338 aa
    • E Value
      0E0
    • BLAST Score
      701 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_004393
      100% cov
    • Alignment Length
      338 aa
    • CIGAR string
      338M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114550722
      XP_001153262
    • Hit length
      339 aa
    • E Value
      1.07E-179
    • BLAST Score
      634.4 bits
    • Similarity
      93.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001153262
      100% cov
    • Alignment Length
      339 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956695
      XP_546743
    • Hit length
      341 aa
    • E Value
      8.04E-158
    • BLAST Score
      561.6 bits
    • Similarity
      86.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_546743
      99.12% cov
    • Alignment Length
      338 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:281351879
      EFB27463
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      336 aa
    • E Value
      4.38E-156
    • BLAST Score
      555.8 bits
    • Similarity
      86.61%
    • Coverage
      99.41%
    • Alignment (schematic)

      SEQ ID NO 2
      99.41% cov
      EFB27463
      100% cov
    • Alignment Length
      336 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:160948620
      NP_031885
      1 of 4 hits reported for Mus musculus.
    • Hit length
      344 aa
    • E Value
      9.05E-156
    • BLAST Score
      555.1 bits
    • Similarity
      88.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_031885
      97.67% cov
    • Alignment Length
      338 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:149024753
      EDL81250
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      369 aa
    • E Value
      2.86E-150
    • BLAST Score
      536.6 bits
    • Similarity
      88.04%
    • Coverage
      96.45%
    • Alignment (schematic)

      SEQ ID NO 2
      96.45% cov
      EDL81250
      87.8% cov
    • Alignment Length
      326 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:296478982
      DAA21097
      1 of 2 hits reported for Bos taurus.
    • Hit length
      341 aa
    • E Value
      5.23E-146
    • BLAST Score
      522.3 bits
    • Similarity
      85.76%
    • Coverage
      99.7%
    • Alignment (schematic)

      SEQ ID NO 2
      99.7% cov
      DAA21097
      98.83% cov
    • Alignment Length
      337 aa
Occurrence
66 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,689
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:47132578
      NM_004401
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      2,053 bp
    • E Value
      0E0
    • BLAST Score
      3,077.6 bits
    • Similarity
      99.82%
    • Coverage
      99.17%
    • Alignment (schematic)

      SEQ ID NO 3
      99.17% cov
      NM_004401
      81.59% cov
    • Alignment Length
      1,675 bp
    • CIGAR string
      14H280MN204MN292MN896M mismatches: 3 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114553882
      XM_001161941
    • Hit length
      2,078 bp
    • E Value
      0E0
    • BLAST Score
      2,957.6 bits
    • Similarity
      98.45%
    • Coverage
      99.41%
    • Alignment (schematic)

      SEQ ID NO 3
      99.41% cov
      XM_001161941
      80.8% cov
    • Alignment Length
      1,681 bp
    • CIGAR string
      8H79MN19MN47MN87MN50MN201MD3MI9MN35MN7MN238MN63MI2MD57MN66MN7MN18MN240MN62MN82MN2MN20MN43MN19MN102MN6MN91M2H mismatches: 22 - insertions: 2 - deletions: 2
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332250287
      XM_003274238
    • Hit length
      1,695 bp
    • E Value
      0E0
    • BLAST Score
      2,693.5 bits
    • Similarity
      95.67%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 3
      99.53% cov
      XM_003274238
      98.7% cov
    • Alignment Length
      1,685 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297282158
      XM_001102195
    • Hit length
      1,144 bp
    • E Value
      0E0
    • BLAST Score
      1,777.6 bits
    • Similarity
      95.13%
    • Coverage
      66.73%
    • Alignment (schematic)

      SEQ ID NO 3
      66.73% cov
      XM_001102195
      98.51% cov
    • Alignment Length
      1,130 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296206683
      XM_002750276
    • Hit length
      1,024 bp
    • E Value
      0E0
    • BLAST Score
      1,552.3 bits
    • Similarity
      94.22%
    • Coverage
      60.21%
    • Alignment (schematic)

      SEQ ID NO 3
      60.21% cov
      XM_002750276
      99.32% cov
    • Alignment Length
      1,020 bp
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
331
Type
peptide
Locations
Detailed Description, Summary

Declared organism:
Not specified

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4758148
      NP_004392
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      331 aa
    • E Value
      0E0
    • BLAST Score
      664.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_004392
      100% cov
    • Alignment Length
      331 aa
    • CIGAR string
      129MN96MN104M mismatches: 2 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30584271
      AAP36384
    • Hit length
      332 aa
    • E Value
      0E0
    • BLAST Score
      664.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAP36384
      99.7% cov
    • Alignment Length
      331 aa
    • CIGAR string
      129MN96MN104M mismatches: 2 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:108996940
      XP_001102195
    • Hit length
      331 aa
    • E Value
      3.61E-177
    • BLAST Score
      625.9 bits
    • Similarity
      96.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001102195
      100% cov
    • Alignment Length
      331 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114553883
      XP_001161941
    • Hit length
      331 aa
    • E Value
      3.86E-174
    • BLAST Score
      615.9 bits
    • Similarity
      97.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001161941
      100% cov
    • Alignment Length
      331 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332250288
      XP_003274286
    • Hit length
      328 aa
    • E Value
      1.35E-171
    • BLAST Score
      607.4 bits
    • Similarity
      97.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003274286
      100% cov
    • Alignment Length
      331 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296206684
      XP_002750322
    • Hit length
      331 aa
    • E Value
      3.5E-166
    • BLAST Score
      589.3 bits
    • Similarity
      94.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002750322
      100% cov
    • Alignment Length
      331 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149695538
      XP_001490584
    • Hit length
      334 aa
    • E Value
      1.3E-159
    • BLAST Score
      567.8 bits
    • Similarity
      92.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001490584
      99.1% cov
    • Alignment Length
      331 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301784132
      XP_002927482
    • Hit length
      325 aa
    • E Value
      1.41E-145
    • BLAST Score
      520.8 bits
    • Similarity
      91.14%
    • Coverage
      95.47%
    • Alignment (schematic)

      SEQ ID NO 4
      95.47% cov
      XP_002927482
      96.62% cov
    • Alignment Length
      316 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:115496532
      NP_001068810
    • Hit length
      329 aa
    • E Value
      7.35E-143
    • BLAST Score
      511.9 bits
    • Similarity
      86.97%
    • Coverage
      99.7%
    • Alignment (schematic)

      SEQ ID NO 4
      99.7% cov
      NP_001068810
      99.7% cov
    • Alignment Length
      330 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:9087146
      O54786
      1 of 2 hits reported for Mus musculus.
    • Hit length
      331 aa
    • E Value
      5.44E-142
    • BLAST Score
      509.2 bits
    • Similarity
      88.15%
    • Coverage
      99.4%
    • Alignment (schematic)

      SEQ ID NO 4
      99.4% cov
      O54786
      99.4% cov
    • Alignment Length
      329 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311258431
      XP_003127611
    • Hit length
      330 aa
    • E Value
      8.19E-142
    • BLAST Score
      508.4 bits
    • Similarity
      87.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003127611
      100% cov
    • Alignment Length
      331 aa
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
26
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
20
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Geobacillus thermocatenulatus

    Geobacillus thermocatenulatus

    • Public DB hit
      GI:337295046
      FN538989
    • Hit length
      1,560 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FN538989
      1.28% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pTrypRNAiGate

    Cloning vector pTrypRNAiGate

    • Public DB hit
      GI:334854400
      JF748716
    • Hit length
      9,177 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      JF748716
      0.22% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pDC-KHT

    Cloning vector pDC-KHT

    • Public DB hit
      GI:333805711
      JF430587
    • Hit length
      6,458 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      JF430587
      0.31% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pDC-KHGT

    Cloning vector pDC-KHGT

    • Public DB hit
      GI:333805710
      JF430586
    • Hit length
      7,173 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      JF430586
      0.28% cov
    • Alignment Length
      20 bp
  • Rhodotorula sp. CH4

    Rhodotorula sp. CH4

    • Public DB hit
      GI:333774853
      FR822395
    • Hit length
      652 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FR822395
      3.07% cov
    • Alignment Length
      20 bp
  • Xenopus transgenesis plasmid pDPCrtTA-TREG-HS4

    Xenopus transgenesis plasmid pDPCrtTA-TREG-HS4

    • Public DB hit
      GI:330368226
      JF330265
    • Hit length
      8,935 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      JF330265
      0.22% cov
    • Alignment Length
      20 bp
  • Eimeria maxima

    Eimeria maxima

    • Public DB hit
      GI:328926912
      FN813228
    • Hit length
      1,924 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FN813228
      1.04% cov
    • Alignment Length
      20 bp
  • Zea mays

    Zea mays

    • Public DB hit
      GI:327466189
      HQ233654
      1 of 3 hits reported for Zea mays.
    • Hit length
      1,047 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ233654
      1.91% cov
    • Alignment Length
      20 bp
  • Cloning vector pGBT-RP2

    Cloning vector pGBT-RP2

    • Public DB hit
      GI:327176845
      HQ335170
    • Hit length
      9,119 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ335170
      0.22% cov
    • Alignment Length
      20 bp
  • Cloning vector pGBT-R16

    Cloning vector pGBT-R16

    • Public DB hit
      GI:327176842
      HQ335169
    • Hit length
      5,622 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ335169
      0.36% cov
    • Alignment Length
      20 bp
  • Cloning vector pGBT-R15

    Cloning vector pGBT-R15

    • Public DB hit
      GI:327176839
      HQ335168
    • Hit length
      5,469 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ335168
      0.37% cov
    • Alignment Length
      20 bp
  • Cloning vector pGBT-R14

    Cloning vector pGBT-R14

    • Public DB hit
      GI:327176836
      HQ335167
    • Hit length
      8,392 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ335167
      0.24% cov
    • Alignment Length
      20 bp
  • Cloning vector pGBT-PX

    Cloning vector pGBT-PX

    • Public DB hit
      GI:327176833
      HQ335166
    • Hit length
      8,504 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ335166
      0.24% cov
    • Alignment Length
      20 bp
  • Transformation and cloning vector pVCC

    Transformation and cloning vector pVCC

    • Public DB hit
      GI:325656975
      HQ207194
    • Hit length
      5,155 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ207194
      0.39% cov
    • Alignment Length
      20 bp
  • Pseudomonas aeruginosa

    Pseudomonas aeruginosa

    • Public DB hit
      GI:321156587
      FR745414
    • Hit length
      537 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FR745414
      3.72% cov
    • Alignment Length
      20 bp
  • Cloning vector pBAC-DE

    Cloning vector pBAC-DE

    • Public DB hit
      GI:319759856
      HQ670404
    • Hit length
      8,821 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HQ670404
      0.23% cov
    • Alignment Length
      20 bp
  • Expression vector pTAOR4-Rev-boxAB

    Expression vector pTAOR4-Rev-boxAB

    • Public DB hit
      GI:317108105
      AB600173
    • Hit length
      7,682 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AB600173
      0.26% cov
    • Alignment Length
      20 bp
  • Cloning vector pInSRT-GFPV1

    Cloning vector pInSRT-GFPV1

    • Public DB hit
      GI:316980675
      AB570081
    • Hit length
      12,929 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AB570081
      0.15% cov
    • Alignment Length
      20 bp
  • Cloning vector pInSRT-GFPV3

    Cloning vector pInSRT-GFPV3

    • Public DB hit
      GI:316980672
      AB570080
    • Hit length
      7,667 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AB570080
      0.26% cov
    • Alignment Length
      20 bp
  • Cairina moschata

    Cairina moschata

    • Public DB hit
      GI:315466879
      FR750515
    • Hit length
      835 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FR750515
      2.4% cov
    • Alignment Length
      20 bp
  • Clostridium oceanicum

    Clostridium oceanicum

    • Public DB hit
      GI:315466803
      FR749925
    • Hit length
      1,620 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FR749925
      1.23% cov
    • Alignment Length
      20 bp
  • Anas platyrhynchos

    Anas platyrhynchos

    • Public DB hit
      GI:315466452
      FR750463
    • Hit length
      707 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FR750463
      2.83% cov
    • Alignment Length
      20 bp
  • Leishmania chagasi

    Leishmania chagasi

    • Public DB hit
      GI:315248849
      GQ290460
    • Hit length
      743 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GQ290460
      2.69% cov
    • Alignment Length
      20 bp
Occurrence
150 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
26
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
17
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
30
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332807488
      XM_001153262
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,541 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_001153262
      1.95% cov
    • Alignment Length
      30 bp
    • CIGAR string
      30M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332258771
      XM_003278421
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,438 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_003278421
      2.09% cov
    • Alignment Length
      30 bp
    • CIGAR string
      30M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297666631
      XM_002811576
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      789 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002811576
      3.8% cov
    • Alignment Length
      30 bp
    • CIGAR string
      30M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:51988888
      NM_004402
      1 of 18 hits reported for Homo sapiens.
    • Hit length
      3,034 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_004402
      0.99% cov
    • Alignment Length
      30 bp
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
30
Type
DNA
Locations
Detailed Description

Declared organism:
Not specified

Determined organism:
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332807488
      XM_001153262
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,541 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_001153262
      1.95% cov
    • Alignment Length
      30 bp
    • CIGAR string
      30M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332258771
      XM_003278421
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,438 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_003278421
      2.09% cov
    • Alignment Length
      30 bp
    • CIGAR string
      30M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297666631
      XM_002811576
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      789 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_002811576
      3.8% cov
    • Alignment Length
      30 bp
    • CIGAR string
      30M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:51988888
      NM_004402
      1 of 18 hits reported for Homo sapiens.
    • Hit length
      3,034 bp
    • E Value
      3.61E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_004402
      0.99% cov
    • Alignment Length
      30 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73956694
      XM_546743
    • Hit length
      1,026 bp
    • E Value
      1.38E-3
    • BLAST Score
      48.1 bits
    • Similarity
      96.43%
    • Coverage
      93.33%
    • Alignment (schematic)

      SEQ ID NO 10
      93.33% cov
      XM_546743
      2.73% cov
    • Alignment Length
      28 bp
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder

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