Molecular Methods And Compositions For Detecting And Quantifying Respiratory Viruses

  • Published: Jan 19, 2006
  • Earliest Priority: Dec 19 2002
  • Family: 5
  • Cited Works: 0
  • Cited by: 19
  • Cites: 5
  • Sequences: 174
  • Additional Info: Full text
Data obtained from: USPTO Fulltext
174 sequences found in this patent (in total)

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Download sequences in fasta format: 174 nucleotides

Displaying 1 - 10 of 174 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
13,350
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:20150834
      AF371337
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      13,350 bp
    • E Value
      0E0
    • BLAST Score
      24,653.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF371337
      100% cov
    • Alignment Length
      13,350 bp
    • CIGAR string
      13350M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
76 times in PatSeqDB
Tools
SEQ ID NO
2
Length
782
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:113472627
      DQ843658
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      13,271 bp
    • E Value
      0E0
    • BLAST Score
      1,376.9 bits
    • Similarity
      98.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      DQ843658
      5.89% cov
    • Alignment Length
      783 bp
    • CIGAR string
      137MN361MD7MI115MN43MN57MN2MNMNMN23MN3MN3MD18M mismatches: 9 - insertions: 1 - deletions: 2
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
3
Length
878
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:38327225
      AY355323
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      1,141 bp
    • E Value
      0E0
    • BLAST Score
      1,578.2 bits
    • Similarity
      99.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AY355323
      77.04% cov
    • Alignment Length
      880 bp
    • CIGAR string
      10MN2MN344MN378MN28MD89MI14MI3MN4M mismatches: 5 - insertions: 2 - deletions: 1
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
4
Length
876
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:326649640
      HM197719
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      13,243 bp
    • E Value
      0E0
    • BLAST Score
      1,543.1 bits
    • Similarity
      98.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      HM197719
      6.63% cov
    • Alignment Length
      880 bp
    • CIGAR string
      8MN274MN65MN65MN62MN39MN127MN114MN63MI3MD4MD3MI24MI7MI8M mismatches: 8 - insertions: 4 - deletions: 2
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
5
Length
869
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:30088916
      AY256875
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      1,044 bp
    • E Value
      0E0
    • BLAST Score
      1,581.9 bits
    • Similarity
      99.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY256875
      83.14% cov
    • Alignment Length
      869 bp
    • CIGAR string
      178MN272MN149MN154MD112M mismatches: 3 - insertions: 0 - deletions: 1
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
6
Length
848
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:38327247
      AY355334
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      1,140 bp
    • E Value
      0E0
    • BLAST Score
      1,533.8 bits
    • Similarity
      99.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AY355334
      74.39% cov
    • Alignment Length
      849 bp
    • CIGAR string
      10MN107MN78MN142MN429MI2MD75M mismatches: 4 - insertions: 1 - deletions: 1
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
7
Length
894
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:42632357
      AY530092
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      7,194 bp
    • E Value
      0E0
    • BLAST Score
      1,530.1 bits
    • Similarity
      97.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY530092
      12.43% cov
    • Alignment Length
      900 bp
    • CIGAR string
      501MIMD132MIMD14MD3MI11MN17MN30MN32MN11MN2MN5MNMN10MN11MIMD9MN15MD4MI30MIMD36M mismatches: 10 - insertions: 6 - deletions: 6
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
8
Length
850
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:42632357
      AY530092
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      7,194 bp
    • E Value
      0E0
    • BLAST Score
      1,513.5 bits
    • Similarity
      98.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AY530092
      11.8% cov
    • Alignment Length
      850 bp
    • CIGAR string
      178MN422MN11MN100MN45MN6MD6MN8MN22MN19MN23M mismatches: 9 - insertions: 0 - deletions: 1
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
9
Length
1,185
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:20150834
      AF371337
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      13,350 bp
    • E Value
      0E0
    • BLAST Score
      2,189.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF371337
      8.88% cov
    • Alignment Length
      1,185 bp
    • CIGAR string
      1185M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
74 times in PatSeqDB
Tools
SEQ ID NO
10
Length
700
Sequence Type
nucleotide
Locations
Claims
Declared organism
Homo sapiens
Determined organism
  • Human metapneumovirus

    Human metapneumovirus

    • Public DB hit
      GI:38327225
      AY355323
      1 of 25 hits reported for Human metapneumovirus.
    • Hit length
      1,141 bp
    • E Value
      0E0
    • BLAST Score
      1,277.2 bits
    • Similarity
      99.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY355323
      61.35% cov
    • Alignment Length
      700 bp
    • CIGAR string
      375MN220MN6MN96M mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools

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