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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
83 sequences found in this patent (in total)

Displaying 1 - 10 of 83 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
2,389
Type
nucleotide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4835894
      AF136450
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      2,389 bp
    • E Value
      0E0
    • BLAST Score
      4,412.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF136450
      100% cov
    • Alignment Length
      2,389 bp
    • CIGAR string
      2389M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098649
      NM_001133042
    • Hit length
      2,579 bp
    • E Value
      0E0
    • BLAST Score
      4,071.1 bits
    • Similarity
      98.61%
    • Coverage
      96.36%
    • Alignment (schematic)

      SEQ ID NO 1
      96.36% cov
      NM_001133042
      89.1% cov
    • Alignment Length
      2,304 bp
    • CIGAR string
      43MN8MN21MN7MN3MN73M3D33MN105MN7MI3MD81MN5MN4MN33MN332MN322MN68MN8MN235MN49MN8MN69MN210MN27MN68MN78MN289MN75MIMD3MD4M87H mismatches: 24 - insertions: 2 - deletions: 6
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332821134
      XM_526893
    • Hit length
      8,479 bp
    • E Value
      0E0
    • BLAST Score
      4,013.9 bits
    • Similarity
      99.68%
    • Coverage
      91.88%
    • Alignment (schematic)

      SEQ ID NO 1
      91.88% cov
      XM_526893
      25.88% cov
    • Alignment Length
      2,196 bp
    • CIGAR string
      107H89MN198MN371MN1412MN111MIMD3MD4M87H mismatches: 4 - insertions: 1 - deletions: 2
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233860
      XM_003266075
    • Hit length
      7,696 bp
    • E Value
      0E0
    • BLAST Score
      3,880.9 bits
    • Similarity
      98.63%
    • Coverage
      91.88%
    • Alignment (schematic)

      SEQ ID NO 1
      91.88% cov
      XM_003266075
      28.43% cov
    • Alignment Length
      2,196 bp
    • CIGAR string
      107H6MN22MN23M6D12MN17MN138MN59MN5MN32MN17MN29MN101MN161MN164MN422MN134MN32MN125MN149MN65MN257MN155MN33MIMD3MD4M87H mismatches: 21 - insertions: 1 - deletions: 8
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:261858091
      AB527404
    • Hit length
      1,889 bp
    • E Value
      0E0
    • BLAST Score
      3,456.2 bits
    • Similarity
      99.95%
    • Coverage
      78.44%
    • Alignment (schematic)

      SEQ ID NO 1
      78.44% cov
      AB527404
      99.21% cov
    • Alignment Length
      1,874 bp
    • CIGAR string
      406H1372MN501M109H mismatches: 1 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335283137
      XM_003354196
      1 of 2 hits reported for Sus scrofa.
    • Hit length
      2,420 bp
    • E Value
      0E0
    • BLAST Score
      3,321.4 bits
    • Similarity
      92.65%
    • Coverage
      96.65%
    • Alignment (schematic)

      SEQ ID NO 1
      96.65% cov
      XM_003354196
      95.62% cov
    • Alignment Length
      2,325 bp
    • CIGAR string
      33MDN3MN4MN3MIN2MN2MN3MI12MD4M2IMN9MI5M4D3M2N8M2NMN3MNMN12MN12MN24MN20MN7MN3MN5MN11MN2MN14MIMI2MI2MIM2I24MN5MN4MN6MN2M2N17MI3MDN4M2N6M2N4MN5MN2MN17MN3MN5MIMD25M3N5MN17MN14MN20MN11MN29MN2MN57MN28MN5MN29MN14MN5MN41MN32MN8MN53MN29MN23MN50MN17MN8MN3MN16MN2MN38MN59MN11MN13M2N5MN4MN3MN6MN13MN38MN29MN8MN5MN23MN20MN19MN8MN7M2N3MN4MDMI2MN8MNMNMN4MN38MN2MN5MN6MN16MN38MN32MN2MN14M2N2MN4MN29MN5MN65MN101MN23MN32MN8MN26MN2MN2MN17MN11MN2MN11MN80MN20MN2MN11MN4MN19M2N12MN2MN11MN23M2N19MN17MN47MN8MN65MN35MN5MD3MI8MN17MN2MN9MN7MN5MN23MN3MIMD6M80H mismatches: 144 - insertions: 16 - deletions: 11
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763682
      XM_002917220
    • Hit length
      2,694 bp
    • E Value
      0E0
    • BLAST Score
      3,218 bits
    • Similarity
      94.66%
    • Coverage
      86.9%
    • Alignment (schematic)

      SEQ ID NO 1
      86.9% cov
      XM_002917220
      77.02% cov
    • Alignment Length
      2,079 bp
    • CIGAR string
      226H26MN4MN19MN10MNMN18MN28MD2MI6MN2MN15MN28MN5MN17MN23MN11MN11MN23MN8MN47MN9MN25MN2MN56MN41MN32MN5MN2MN14MN29MN14MN5MN8MN8MN23MN47MN2MN17MN8MN3MN16MN2M2N34MN2MN59MN11MN13M2N2MN2MN8MN20MN7MN30MN38MN29MN20MN28MN8MN12MN8M2N10MN23MN11MN5MN2MN5MN65MN23MN8MN12MN4MN29MN71MN41MN29MN2MN8MN41MN5MN14MN2MN2MN14MN17MN5MN2MN11MN11MN14MN11MN71MN8MN23MN16MN42MN8MN41MN24MN49MN2MN104MD3MI23MN23MN2MN21MIMD3MD4M87H mismatches: 104 - insertions: 3 - deletions: 4
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:31340889
      NM_174765
    • Hit length
      2,361 bp
    • E Value
      0E0
    • BLAST Score
      3,157 bits
    • Similarity
      91.44%
    • Coverage
      96.36%
    • Alignment (schematic)

      SEQ ID NO 1
      96.36% cov
      NM_174765
      97.88% cov
    • Alignment Length
      2,325 bp
    • CIGAR string
      16MDN20MDMI3MN3MN2MN2MN2MN4M2I8MN5MI3MI8MI4M3D2N2M2N16MN2MN6MN3MN12MN11M3DMN3MN5MN10MN8MN7MN3MN2MN4MN9MN2MN6MN7M11I3MI25MNMN10MN6MN2M2N16MI4MD28MN15MN11MN28MN5MN17MN35MN11MN8MN14MN8MN14MN20MN20M2N28MN50MN5MN14MN47MN11MN8MN74MN5MN2M2N4MN2MN14MN17MN11MN20M2N16MN8MN2MI2MND14MN2MN10MN27MN9MN46MN2MN11MN13MN6MN8MN6MN13MN35MN2MN26MN11MN20MN2MN5MN20MN6MN4MN16MN7M3N11MN8MN47MN8MN6MN13MN59MN14MN2MN9MN4MN2M2N4MN29MN71MNMN51MN2MN5MN11MN2MN2MN5MN23MN2MN11MN41MN26MN8MN2MN11MN14MN11MN71MN8MN8MN2MN8MN2MN2MN8MN4MN18MN4MN12MN2MN26MN5MNIMD18MN23MN17MN8MN5MN17MN35MN2MN2MN5MN17MN15MN19MN5MD3MI8MN17MN20MN24MIMD3MD4M87H mismatches: 162 - insertions: 23 - deletions: 14
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194220124
      XM_001504676
    • Hit length
      2,884 bp
    • E Value
      0E0
    • BLAST Score
      3,109 bits
    • Similarity
      92.55%
    • Coverage
      91.25%
    • Alignment (schematic)

      SEQ ID NO 1
      91.25% cov
      XM_001504676
      75.03% cov
    • Alignment Length
      2,189 bp
    • CIGAR string
      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 mismatches: 129 - insertions: 9 - deletions: 25
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952206
      XM_844832
    • Hit length
      2,636 bp
    • E Value
      0E0
    • BLAST Score
      2,893 bits
    • Similarity
      94.25%
    • Coverage
      79.28%
    • Alignment (schematic)

      SEQ ID NO 1
      79.28% cov
      XM_844832
      71.81% cov
    • Alignment Length
      1,895 bp
    • CIGAR string
      408H11MN35MN11MN8MN14MN8MN32MN14MN9MN25MN2MN56MN29MN11MN20MN5MN5MN5MN2MN14MN53MN5MN8MN23MN47MN2MN5MN11MN5MN2MN3MN16MN2M2N37MN44MN2MN11MN11MN13M2N2MN2MN8MN20MN7MN30MN2MN35MN29MN20MN18M2N8MN8MN12MN8MN11MN23MN11MN5MN2MN95MN5MN2MN12MN4MN29MN71MN41MN5MN8MN17MN8MN41MN5MN17MN17MN8MN8MN5MN2MN11MN11MN14MN11MN60MN10MN8MN23MN16MN9MN41MN41MN24MN49MN2MN74MN29MN2MN17MN5MN23MN2MN3MN9MN7MIMD3MD4M87H mismatches: 106 - insertions: 1 - deletions: 2
Occurrence
54 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
624
Type
peptide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194294543
      NP_001123577
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      752 aa
    • E Value
      0E0
    • BLAST Score
      1,307.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001123577
      82.98% cov
    • Alignment Length
      624 aa
    • CIGAR string
      624M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233861
      XP_003266123
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      747 aa
    • E Value
      0E0
    • BLAST Score
      1,307 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003266123
      83.53% cov
    • Alignment Length
      624 aa
    • CIGAR string
      624M mismatches: 0 - insertions: 0 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763683
      XP_002917266
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      752 aa
    • E Value
      0E0
    • BLAST Score
      1,296.2 bits
    • Similarity
      99.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002917266
      82.98% cov
    • Alignment Length
      624 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952207
      XP_849925
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,294.3 bits
    • Similarity
      99.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_849925
      100% cov
    • Alignment Length
      624 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098650
      NP_001126514
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,291.2 bits
    • Similarity
      99.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001126514
      100% cov
    • Alignment Length
      624 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:27807473
      NP_777190
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,244.6 bits
    • Similarity
      98.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_777190
      100% cov
    • Alignment Length
      624 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335283136
      XP_003123755
      1 of 2 hits reported for Sus scrofa.
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,240.7 bits
    • Similarity
      98.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003123755
      100% cov
    • Alignment Length
      624 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157821889
      NP_001102405
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,240.7 bits
    • Similarity
      97.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001102405
      100% cov
    • Alignment Length
      624 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:37220716
      AAQ89691
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,239.2 bits
    • Similarity
      98.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAQ89691
      100% cov
    • Alignment Length
      624 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:12963671
      NP_075909
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,230.7 bits
    • Similarity
      98.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_075909
      100% cov
    • Alignment Length
      624 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194220125
      XP_001504726
    • Hit length
      746 aa
    • E Value
      0E0
    • BLAST Score
      1,220.7 bits
    • Similarity
      97.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001504726
      83.65% cov
    • Alignment Length
      624 aa
Occurrence
97 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
2,762
Type
nucleotide
Locations
Detailed Description

Declared organism:
Mus musculus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:11967326
      AF232932
      1 of 3 hits reported for Mus musculus.
    • Hit length
      2,760 bp
    • E Value
      0E0
    • BLAST Score
      5,060.9 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF232932
      100% cov
    • Alignment Length
      2,762 bp
    • CIGAR string
      1660MN347MN653MN22MN5MD38MD19MN11M mismatches: 5 - insertions: 0 - deletions: 2
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157821888
      NM_001108935
    • Hit length
      5,336 bp
    • E Value
      0E0
    • BLAST Score
      4,215.2 bits
    • Similarity
      94.48%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 3
      99.53% cov
      NM_001108935
      51.12% cov
    • Alignment Length
      2,753 bp
    • CIGAR string
      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 mismatches: 123 - insertions: 4 - deletions: 25
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194306557
      NM_005713
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      5,395 bp
    • E Value
      0E0
    • BLAST Score
      3,216.1 bits
    • Similarity
      88.06%
    • Coverage
      98.7%
    • Alignment (schematic)

      SEQ ID NO 3
      98.7% cov
      NM_005713
      50.84% cov
    • Alignment Length
      2,773 bp
    • CIGAR string
      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 mismatches: 254 - insertions: 47 - deletions: 30
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332821134
      XM_526893
    • Hit length
      8,479 bp
    • E Value
      0E0
    • BLAST Score
      3,170 bits
    • Similarity
      88.64%
    • Coverage
      94.53%
    • Alignment (schematic)

      SEQ ID NO 3
      94.53% cov
      XM_526893
      31.06% cov
    • Alignment Length
      2,658 bp
    • CIGAR string
      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 mismatches: 231 - insertions: 47 - deletions: 24
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233860
      XM_003266075
    • Hit length
      7,696 bp
    • E Value
      0E0
    • BLAST Score
      3,149.7 bits
    • Similarity
      88.57%
    • Coverage
      94.24%
    • Alignment (schematic)

      SEQ ID NO 3
      94.24% cov
      XM_003266075
      34.03% cov
    • Alignment Length
      2,642 bp
    • CIGAR string
      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 mismatches: 240 - insertions: 39 - deletions: 23
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311249677
      XM_003123707
    • Hit length
      3,169 bp
    • E Value
      0E0
    • BLAST Score
      3,083.2 bits
    • Similarity
      87.95%
    • Coverage
      95%
    • Alignment (schematic)

      SEQ ID NO 3
      95% cov
      XM_003123707
      83.5% cov
    • Alignment Length
      2,673 bp
    • CIGAR string
      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 mismatches: 246 - insertions: 49 - deletions: 27
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763682
      XM_002917220
    • Hit length
      2,694 bp
    • E Value
      0E0
    • BLAST Score
      3,027.8 bits
    • Similarity
      88.88%
    • Coverage
      89.36%
    • Alignment (schematic)

      SEQ ID NO 3
      89.36% cov
      XM_002917220
      92.24% cov
    • Alignment Length
      2,508 bp
    • CIGAR string
      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 mismatches: 216 - insertions: 40 - deletions: 23
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098649
      NM_001133042
    • Hit length
      2,579 bp
    • E Value
      0E0
    • BLAST Score
      3,018.5 bits
    • Similarity
      88.11%
    • Coverage
      92.32%
    • Alignment (schematic)

      SEQ ID NO 3
      92.32% cov
      NM_001133042
      99.53% cov
    • Alignment Length
      2,590 bp
    • CIGAR string
      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 mismatches: 245 - insertions: 40 - deletions: 23
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:37220715
      AY323814
    • Hit length
      1,966 bp
    • E Value
      0E0
    • BLAST Score
      2,989 bits
    • Similarity
      94.11%
    • Coverage
      71.18%
    • Alignment (schematic)

      SEQ ID NO 3
      71.18% cov
      AY323814
      100% cov
    • Alignment Length
      1,968 bp
    • CIGAR string
      389H13MN26MN8MN120MN62MN5MN2MN2MN2MN35MN5MN14MN17MN17MN5MN11MN2MN11MN3MN4MN26MN23MN38MN5MN2MN8MN5MN5MN11MN18MN13MN2MN3MNMN6MNMN2M2NMN2MN5MN8MN23MN17MN5MN11MN74MN23MN2MN14MN116MN4MN4MN4MN5MN6MNMN8MN10M2N4MN3MN20MN8MN17MN20MN65MN2MN20MN3MNMN14M2N13MN5MN104MN19MD2MIMN26MN11MN5MN35MN38MN26MN2MN19MN42MN5MN30MN22MN5MN14MN44MN2MN2MN5MN35MN2MN39MN19MN21MN7MN29MN2MN32MN5MN5MN17MN8MN5MN23MN42MI2MD20MN5MN4M407H mismatches: 112 - insertions: 2 - deletions: 2
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952206
      XM_844832
    • Hit length
      2,636 bp
    • E Value
      0E0
    • BLAST Score
      2,893 bits
    • Similarity
      89.23%
    • Coverage
      83.78%
    • Alignment (schematic)

      SEQ ID NO 3
      83.78% cov
      XM_844832
      88.62% cov
    • Alignment Length
      2,350 bp
    • CIGAR string
      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 mismatches: 203 - insertions: 36 - deletions: 14
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
624
Type
peptide
Locations
Detailed Description

Declared organism:
Mus musculus

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:12963671
      NP_075909
      1 of 3 hits reported for Mus musculus.
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,303.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_075909
      100% cov
    • Alignment Length
      624 aa
    • CIGAR string
      624M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157821889
      NP_001102405
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,294.3 bits
    • Similarity
      99.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001102405
      100% cov
    • Alignment Length
      624 aa
    • CIGAR string
      102MN191MN55MN24MN114MN61MN71M mismatches: 6 - insertions: 0 - deletions: 0
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:37220716
      AAQ89691
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,246.1 bits
    • Similarity
      99.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAQ89691
      100% cov
    • Alignment Length
      624 aa
    • CIGAR string
      102MN5MN169MNMN5MN6MNMN55MN5MN47MN57MN26MN59MN13MN59M mismatches: 14 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952207
      XP_849925
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,238 bits
    • Similarity
      98.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_849925
      100% cov
    • Alignment Length
      624 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763683
      XP_002917266
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      752 aa
    • E Value
      0E0
    • BLAST Score
      1,236.1 bits
    • Similarity
      98.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002917266
      82.98% cov
    • Alignment Length
      624 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233861
      XP_003266123
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      747 aa
    • E Value
      0E0
    • BLAST Score
      1,230.7 bits
    • Similarity
      98.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003266123
      83.53% cov
    • Alignment Length
      624 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:5031717
      NP_005704
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,230.7 bits
    • Similarity
      98.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_005704
      100% cov
    • Alignment Length
      624 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:27807473
      NP_777190
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,224.5 bits
    • Similarity
      97.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_777190
      100% cov
    • Alignment Length
      624 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335283136
      XP_003123755
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,222.6 bits
    • Similarity
      97.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003123755
      100% cov
    • Alignment Length
      624 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098650
      NP_001126514
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,217.6 bits
    • Similarity
      97.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001126514
      100% cov
    • Alignment Length
      624 aa
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
2,361
Type
nucleotide
Locations
Detailed Description

Declared organism:
Bos taurus

Determined organism:
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:31340889
      NM_174765
    • Hit length
      2,361 bp
    • E Value
      0E0
    • BLAST Score
      4,355.5 bits
    • Similarity
      99.96%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_174765
      100% cov
    • Alignment Length
      2,361 bp
    • CIGAR string
      511MN1849M mismatches: 1 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311249677
      XM_003123707
      1 of 2 hits reported for Sus scrofa.
    • Hit length
      3,169 bp
    • E Value
      0E0
    • BLAST Score
      3,356.5 bits
    • Similarity
      93.54%
    • Coverage
      95.6%
    • Alignment (schematic)

      SEQ ID NO 5
      95.6% cov
      XM_003123707
      71.13% cov
    • Alignment Length
      2,261 bp
    • CIGAR string
      98H12M2NMN3M3NMN6MN29M2N7MIMIMI10MN23MN2MNMN19MN7M5D3MD8MN22MN7MN4MN28MN3MN4M2N6M2N4MN5MN18MNMN3MN6MN25M2N39MN41MN14MN5MNMN15MN20MN20MN35MN29MN35MN26MN20MN74MN20MN5MN3MN4MN2MN32MN11MN21MN28MN2MN17MN10MN37MN46MN29MN10MN60MN29MN2MN14MN14MN2MN33MN4MN7MN18MN2MN4MDMI13MNMN4MN41MN26MN2MN38MN17MN27MN4M2NMN41MN67MN51MN2MN5MN11MN2MN2MN5MN14MN8MN2MN44MN38MN2MN2MN2MN23MN86MN17MN2MN14MN8MN23M3N2MN9MN2MN2MN8MN17MN7MN36MN5MN17MN8MN5MN8MN44MN2MN2MN5MN17MN15MN58MN9MN13MN64MN4M6H mismatches: 135 - insertions: 4 - deletions: 7
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194306557
      NM_005713
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      5,395 bp
    • E Value
      0E0
    • BLAST Score
      3,249.4 bits
    • Similarity
      91.65%
    • Coverage
      99.92%
    • Alignment (schematic)

      SEQ ID NO 5
      99.92% cov
      NM_005713
      43.52% cov
    • Alignment Length
      2,371 bp
    • CIGAR string
      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 mismatches: 163 - insertions: 12 - deletions: 23
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098649
      NM_001133042
    • Hit length
      2,579 bp
    • E Value
      0E0
    • BLAST Score
      3,206.9 bits
    • Similarity
      91.35%
    • Coverage
      99.87%
    • Alignment (schematic)

      SEQ ID NO 5
      99.87% cov
      NM_001133042
      90.89% cov
    • Alignment Length
      2,370 bp
    • CIGAR string
      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 mismatches: 167 - insertions: 12 - deletions: 26
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763682
      XM_002917220
    • Hit length
      2,694 bp
    • E Value
      0E0
    • BLAST Score
      3,186.6 bits
    • Similarity
      93.9%
    • Coverage
      89.5%
    • Alignment (schematic)

      SEQ ID NO 5
      89.5% cov
      XM_002917220
      78.4% cov
    • Alignment Length
      2,115 bp
    • CIGAR string
      247H3MD13MN4MN6MNMN10MN6MN2MN2MN14MD3MI31MN6MN2MN3MN88MN32MN22MN15MN20MN11MN8MN26MN53MN20MN26MN20MN17MN17MN29MN14MN5MN8MN5MN3MN4MN2MN32MN11MN17MN3MN28MN2MN17M2N9MN24MN12MN46MN29MN2MN18MN21MN27MN29MN32MN2MN33MN4MN24MNMN20M2N10MN23MN17MN8M2N13MN50MN8MN17MN5MN3MN4MN2MN109MN39MN11MN2MN5MN8MN5MN2MN2MN2MN23MN2MN17MN14MN2MN2MN32MN5MN11MN131MN2MN8MN5MN8MN23MN4MN12MN2MN2MN8MN14MN5MNIMD42M2N16MN8MN5MN20MN32MN2MN2MN5MN17MN15MN19MN17MN14MN2MN23MN65MN6MN4M1H mismatches: 124 - insertions: 2 - deletions: 3
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332821134
      XM_526893
    • Hit length
      8,479 bp
    • E Value
      0E0
    • BLAST Score
      3,166.3 bits
    • Similarity
      92.16%
    • Coverage
      95.3%
    • Alignment (schematic)

      SEQ ID NO 5
      95.3% cov
      XM_526893
      26.42% cov
    • Alignment Length
      2,257 bp
    • CIGAR string
      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 mismatches: 153 - insertions: 7 - deletions: 17
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233860
      XM_003266075
    • Hit length
      7,696 bp
    • E Value
      0E0
    • BLAST Score
      3,114.6 bits
    • Similarity
      91.79%
    • Coverage
      95.26%
    • Alignment (schematic)

      SEQ ID NO 5
      95.26% cov
      XM_003266075
      29.02% cov
    • Alignment Length
      2,253 bp
    • CIGAR string
      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 mismatches: 161 - insertions: 4 - deletions: 20
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194220124
      XM_001504676
    • Hit length
      2,884 bp
    • E Value
      0E0
    • BLAST Score
      3,005.6 bits
    • Similarity
      91.22%
    • Coverage
      94.37%
    • Alignment (schematic)

      SEQ ID NO 5
      94.37% cov
      XM_001504676
      76.35% cov
    • Alignment Length
      2,233 bp
    • CIGAR string
      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 mismatches: 160 - insertions: 5 - deletions: 31
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952206
      XM_844832
    • Hit length
      2,636 bp
    • E Value
      0E0
    • BLAST Score
      2,907.7 bits
    • Similarity
      93.71%
    • Coverage
      82.17%
    • Alignment (schematic)

      SEQ ID NO 5
      82.17% cov
      XM_844832
      73.6% cov
    • Alignment Length
      1,941 bp
    • CIGAR string
      420H68MN22MN15MN17MN2MN11MN8MN26MN53MN20MN14MN11MN26MN11MN17MN53MN5MN5MN3MN4MN2MN32MN11MN17MN3MN4MN17MN5MN2MN17M2N9MN37MN34MN2MN8MN29MN2MN18MN21MN27MN5MN23MN32MN2MN33MN4MN6M2N16MNMN32MN23MN17MN9MN13MN59MN17MN2MN2MN3MN4MN2MN109MN39MN5MN5MN8MN14MN2MN2MN2MN23MN2MN17MN17MN26MN8MN5MN11MN102MN28MN2MN8MN5MN8MN14MN8MN4MN12MN2MN11MN14MN5MNIMD42M2N16MN8MN5MN20MN32MN2MN2MN5MN17MN11MN3MN19MN5MN11MN8MN5MN2MN23MN3MN9MN35MN7MN7MN6MN4M1H mismatches: 120 - insertions: 1 - deletions: 1
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157821888
      NM_001108935
    • Hit length
      5,336 bp
    • E Value
      0E0
    • BLAST Score
      2,889.3 bits
    • Similarity
      88.93%
    • Coverage
      99.92%
    • Alignment (schematic)

      SEQ ID NO 5
      99.92% cov
      NM_001108935
      44% cov
    • Alignment Length
      2,376 bp
    • CIGAR string
      18MIN19MN12MNMDMN2MDN2M2N13MN2MI2MN2M2N3MD5M3IMN12MN8MNMN3MN2MN29M2NMN2MDMDMD10MN15MN7MN4MN10MN8MN7MDMD2MD14MD2MN3MD3M2D2MDMD2MNMN6MN3MNMN6MI2MDMN14MD3MIN2MIMD23MN6MN7MN3MN10MDMI34MN57MN14MN22MN36MN5MN14MN3MN25MN5MN8MN2MN14MN11MN14MN14MN14MN29MN2MN8MN12MN4MN8MN17MN14MN12MN10MN5MN3MN4MN2MN20MN2MN5MN2MN11MN20M2N25MN2MN8MN2MN8MN2MN7MN8MN28MN25MN14MN5MN2MN2MN20MN11MN11M2N34MN11MN2MN2MN2MN23MN2MN14MN14MN14MN2MN2MN11MNMIMN2MD2MDN3MN2MNMI2MN3MNMN3MN4MN14MN4M3D4M2IMI11MN3MD2MIMN3MN5MN5MN5MN5MN9MN10MN2MN50MN8MN23MN3MN2MNMN3MN14MN10MN2MN8MN5MN2MN21MN39MN3MN32MN13M2N8MN14MN2MN2MN2MN6MN16MN2MN8MN2MN11MN11MN2MN23MN14MN29MN23MN8MN80MN2MN6MNMN2MN2MI2MND5MN5MN5MN5MN5MN4MN3MN2MN5MN23MN5MN2MN2MNIMD12MN26MN2M2N5MN10MN2MN5MN5MN9MN10MN5MN11MN14MN2MN2MN5MN5MN11MN8MN6MNMN20MN2MN11MN2MN11MN2MN23MN8MN4MN44MD3MN2M2N3MN5M2H mismatches: 218 - insertions: 17 - deletions: 28
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
624
Type
peptide
Locations
Detailed Description

Declared organism:
Bos taurus

Determined organism:
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:27807473
      NP_777190
      1 of 2 hits reported for Bos taurus.
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,305.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_777190
      100% cov
    • Alignment Length
      624 aa
    • CIGAR string
      30MN593M mismatches: 1 - insertions: 0 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763683
      XP_002917266
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      752 aa
    • E Value
      0E0
    • BLAST Score
      1,247.6 bits
    • Similarity
      99.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002917266
      82.98% cov
    • Alignment Length
      624 aa
    • CIGAR string
      30MN149MN12MN32MN6MN42MN9MN7MN54MN38MN129MN16MN14MN73M mismatches: 13 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952207
      XP_849925
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,246.9 bits
    • Similarity
      99.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_849925
      100% cov
    • Alignment Length
      624 aa
    • CIGAR string
      30MN149MN12MN32MN6MN42MN3MN5MN62MN38MN101MN27MN16MN14MN73M mismatches: 14 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233861
      XP_003266123
    • Hit length
      747 aa
    • E Value
      0E0
    • BLAST Score
      1,242.6 bits
    • Similarity
      98.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003266123
      83.53% cov
    • Alignment Length
      624 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:5031717
      NP_005704
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,242.3 bits
    • Similarity
      98.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_005704
      100% cov
    • Alignment Length
      624 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335283136
      XP_003123755
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,238 bits
    • Similarity
      98.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003123755
      100% cov
    • Alignment Length
      624 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:157821889
      NP_001102405
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,233 bits
    • Similarity
      97.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001102405
      100% cov
    • Alignment Length
      624 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:37220716
      AAQ89691
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,231.1 bits
    • Similarity
      98.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AAQ89691
      100% cov
    • Alignment Length
      624 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098650
      NP_001126514
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,229.5 bits
    • Similarity
      98.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_001126514
      100% cov
    • Alignment Length
      624 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:12963671
      NP_075909
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,223.8 bits
    • Similarity
      97.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_075909
      100% cov
    • Alignment Length
      624 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194220125
      XP_001504726
    • Hit length
      746 aa
    • E Value
      0E0
    • BLAST Score
      1,216.1 bits
    • Similarity
      97.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001504726
      83.65% cov
    • Alignment Length
      624 aa
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
2,187
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:11967322
      AF232930
      1 of 10 hits reported for Homo sapiens.
    • Hit length
      2,187 bp
    • E Value
      0E0
    • BLAST Score
      4,039.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF232930
      100% cov
    • Alignment Length
      2,187 bp
    • CIGAR string
      2187M mismatches: 0 - insertions: 0 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:11967328
      AF232933
    • Hit length
      2,283 bp
    • E Value
      0E0
    • BLAST Score
      2,985.3 bits
    • Similarity
      91.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF232933
      96.28% cov
    • Alignment Length
      2,209 bp
    • CIGAR string
      20MDMI3MN3MN2MN2MN2MN4M2I8MN5MI3MI8MI4M3D2N2M2N16MN2MN6MN3MN12MN11M3DMN3MN5MN10MN8MN7MN3MN2MN4MN9MN2MN6MN7M11I3MI25MNMN10MN6MN2M2N16MI4MD28MN15MN11MN28MN5MN17MN35MN11MN8MN14MN8MN14MN20MN20M2N28MN50MN5MN14MN47MN11MN8MN74MN5MN2M2N4MN2MN14MN17MN11MN20M2N16MN8MN2MI2MND14MN2MN10MN27MN9MN46MN2MN11MN13MN6MN8MN6MN13MN35MN2MN26MN11MN20MN2MN5MN20MN6MN4MN16MN7M3N11MN8MN47MN8MN6MN13MN59MN14MN2MN9MN4MN2M2N4MN29MN47MN2MN5MN11MN2MN2MN5MN23MN2MN11MN41MN26MN8MN2MN11MN14MN11MN71MN8MN8MN2MN8MN2MN2MN8MN4MN18MN4MN12MN2MN26MN5MNIMD18MN23MN17MN8MN5MN17MN35MN2MN2MN5MN17MN15MN19MN5MD3MI8MN17MN20MN15M mismatches: 159 - insertions: 22 - deletions: 11
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:37220713
      AY323813
    • Hit length
      2,473 bp
    • E Value
      0E0
    • BLAST Score
      2,896.7 bits
    • Similarity
      90.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY323813
      88.64% cov
    • Alignment Length
      2,205 bp
    • CIGAR string
      15MN4MDMI3MN3MN2MN2MN2MN2M2N5MD3MI4M2IMN4MINMN3MN3MNMDN3M2N6MNMN7M2N5MN6MN12MN15MN5M2N22MN4MI3MD3MN17MDMIMN19MIMIMI9MN7MIMD4MN6MN5MN4MNMNMNMN17MN3MIMD23MDMI13MNMNMN9M3N25M2N5MN17MN35MN11MN32MN14MN42MN2MN25MN8MN2MN5MN26MN11MN17MN8MN5MN32MN8MN8MN35MN14MN8MN3MN19MN20MN8MN8MN17MN17MN17MN32MN2MN2MN13MN18MN50MN8MN11MN5MN5MNMN6MN2MN5MN5MN14MN2MN2MN35MN35MN21MN7MN5MN2MN2MN8MN2MN4MIMD10MDMI7MN4MN2M2N12MN2MN9MN4MN8MN3MN3M2N8MN2MN14MN2MN17MN2MN50MN14MN2MN5MN2MN5MN9MD2MI5MN23MN5MN11MN20MN35MN2MN5MN8M2NMN41MN11MN17MN23MN2MN8MN14MI3MD4MN6MN20MN14MN5MN41MN8MN18MN4MN3MNMN10MDMI11MN14MN2MN8MN38MN8MN5MN20MN26MN29MN5MN11MN32MN20MN8MN11MN5MN56MN2MN8MN3M mismatches: 176 - insertions: 18 - deletions: 13
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296194318
      XR_087234
    • Hit length
      2,738 bp
    • E Value
      0E0
    • BLAST Score
      2,861.6 bits
    • Similarity
      95.19%
    • Coverage
      82.17%
    • Alignment (schematic)

      SEQ ID NO 7
      82.17% cov
      XR_087234
      66.73% cov
    • Alignment Length
      1,830 bp
    • CIGAR string
      390H17MN50MN20MN17MN89MN38MN83MN50MN32MN5MN17MN14MN11M5IM2I5MDN10MN24M3N21MIMDN5MN11MN7MIM4I3M4IMIN2M3I2M11I69MN9MN15MN6MN149MN15MN12MDMI7MN7MN8MN3MN11MN21MN41MN5MN107MN35MN44MN68MN29MN47MN2MN11MN122MN25MN13MN22MN101MN29MN8MN128MN11MN24M mismatches: 52 - insertions: 33 - deletions: 3
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:11967330
      AF232934
      1 of 4 hits reported for Mus musculus.
    • Hit length
      2,682 bp
    • E Value
      0E0
    • BLAST Score
      2,673.2 bits
    • Similarity
      88.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF232934
      81.66% cov
    • Alignment Length
      2,208 bp
    • CIGAR string
      17MIM2NM2IMI3MN3MN2MNM2N2MN2M2N8MN4M2IMN4M2N3MN5MIMDN3M2N8MN7M2N5MN6MN12MN12MDMDMDM2DMDN22MN4MI3MD3MN17MN2MN14MIMI2MI21MIMD11MN5MN4MNMNMNMN11MN5MN2MINMD23MDMI5MN7MNMNMN9MDNMI26MN5MNMN15MN35MN11MN32MN14MN8MN33MN2MN31MN8MN2MN26MN5MN20MN2MN8MN23MN5MN8MN2MN2MN2MN12MN4MN26MN14MN12MN19MN14MN8MN5MN2MN11MN29M2N13MN6MNMN6MNMN2M2NMN2MN5MN2MN2MN16MN9MN8MN8MN5MN11MN23MN8MN11MN5MN5MNMN6MN2MN11MN14MN20MN20MN35MN21MN7MN5MN2MN2MN8MN2MN4M2N3MD3MN2MNMI2MN4M2N3MN2M3N8MN2MN2MN4M2N2MI2MD12MN3MD3MDMI3MI5MN2MN14MN2MN17MN53MN23MN2MN5MN5MN5MN5MN8M2N13MN5MN11MN14MN5MN13MN3MN17MN2MN5MN8M2N7MN35MN11MN17MN8MN14MN2MN11MN11MI3MD11MN20MN51MN10MN8MN2MN5MN9MN8MNMN10MDMI11MN62MN11MN5MN20MN3MN19MN2MN18MN7MN2MN5MN11MN8MN2MN20MN11MN5MN2MN2MN5MN17MN2MN5MN23MN23MN2MN8MN3M mismatches: 208 - insertions: 21 - deletions: 18
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098649
      NM_001133042
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,579 bp
    • E Value
      0E0
    • BLAST Score
      2,640 bits
    • Similarity
      98.47%
    • Coverage
      68.59%
    • Alignment (schematic)

      SEQ ID NO 7
      68.59% cov
      NM_001133042
      58.05% cov
    • Alignment Length
      1,501 bp
    • CIGAR string
      25MN8MN21MN7MN3MN73M3D33MN105MN7MI3MD81MN5MN4MN33MN332MN322MN68MN8MN235MN49MN8MN48M687H mismatches: 18 - insertions: 1 - deletions: 4
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332821134
      XM_526893
    • Hit length
      8,479 bp
    • E Value
      0E0
    • BLAST Score
      2,590.1 bits
    • Similarity
      99.79%
    • Coverage
      64.52%
    • Alignment (schematic)

      SEQ ID NO 7
      64.52% cov
      XM_526893
      16.64% cov
    • Alignment Length
      1,411 bp
    • CIGAR string
      89H89MN198MN371MN750M687H mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
598
Type
peptide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:14165452
      NP_112729
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,253.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_112729
      100% cov
    • Alignment Length
      598 aa
    • CIGAR string
      598M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233861
      XP_003266123
    • Hit length
      747 aa
    • E Value
      0E0
    • BLAST Score
      1,216.4 bits
    • Similarity
      95.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003266123
      83.53% cov
    • Alignment Length
      624 aa
    • CIGAR string
      370M26I228M mismatches: 0 - insertions: 26 - deletions: 0
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:11967329
      AAG42049
      1 of 2 hits reported for Bos taurus.
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,209.5 bits
    • Similarity
      98.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAG42049
      100% cov
    • Alignment Length
      598 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763683
      XP_002917266
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      752 aa
    • E Value
      0E0
    • BLAST Score
      1,205.3 bits
    • Similarity
      95.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002917266
      82.98% cov
    • Alignment Length
      624 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098650
      NP_001126514
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,203.7 bits
    • Similarity
      95.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001126514
      100% cov
    • Alignment Length
      624 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952207
      XP_849925
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,202.6 bits
    • Similarity
      95.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_849925
      100% cov
    • Alignment Length
      624 aa
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:81893090
      Q6VVX2
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,201.8 bits
    • Similarity
      98.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      Q6VVX2
      100% cov
    • Alignment Length
      598 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:255982524
      NP_001157694
      1 of 2 hits reported for Mus musculus.
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,193.7 bits
    • Similarity
      97.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001157694
      100% cov
    • Alignment Length
      598 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291413640
      XP_002723078
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,192.6 bits
    • Similarity
      97.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002723078
      100% cov
    • Alignment Length
      598 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335283136
      XP_003123755
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,189.5 bits
    • Similarity
      94.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003123755
      100% cov
    • Alignment Length
      624 aa
Occurrence
92 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
2,684
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:11967330
      AF232934
      1 of 4 hits reported for Mus musculus.
    • Hit length
      2,682 bp
    • E Value
      0E0
    • BLAST Score
      4,916.9 bits
    • Similarity
      99.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF232934
      100% cov
    • Alignment Length
      2,684 bp
    • CIGAR string
      1582MN347MN653MN22MN5MD38MD19MN11M mismatches: 5 - insertions: 0 - deletions: 2
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:37220713
      AY323813
    • Hit length
      2,473 bp
    • E Value
      0E0
    • BLAST Score
      3,565.2 bits
    • Similarity
      93.19%
    • Coverage
      90.5%
    • Alignment (schematic)

      SEQ ID NO 9
      90.5% cov
      AY323813
      98.18% cov
    • Alignment Length
      2,437 bp
    • CIGAR string
      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 mismatches: 149 - insertions: 8 - deletions: 9
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:194294545
      NM_031361
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      5,317 bp
    • E Value
      0E0
    • BLAST Score
      3,077.6 bits
    • Similarity
      87.76%
    • Coverage
      98.66%
    • Alignment (schematic)

      SEQ ID NO 9
      98.66% cov
      NM_031361
      50.12% cov
    • Alignment Length
      2,695 bp
    • CIGAR string
      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 mismatches: 253 - insertions: 47 - deletions: 30
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:11967328
      AF232933
    • Hit length
      2,283 bp
    • E Value
      0E0
    • BLAST Score
      2,689.8 bits
    • Similarity
      88.23%
    • Coverage
      84.17%
    • Alignment (schematic)

      SEQ ID NO 9
      84.17% cov
      AF232933
      99.3% cov
    • Alignment Length
      2,286 bp
    • CIGAR string
      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 mismatches: 223 - insertions: 27 - deletions: 19
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296194318
      XR_087234
    • Hit length
      2,738 bp
    • E Value
      0E0
    • BLAST Score
      2,479.3 bits
    • Similarity
      86.71%
    • Coverage
      83.31%
    • Alignment (schematic)

      SEQ ID NO 9
      83.31% cov
      XR_087234
      83.31% cov
    • Alignment Length
      2,302 bp
    • CIGAR string
      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 mismatches: 219 - insertions: 66 - deletions: 21
Occurrence
14 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
598
Type
peptide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:255982524
      NP_001157694
      1 of 3 hits reported for Mus musculus.
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,250.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001157694
      100% cov
    • Alignment Length
      598 aa
    • CIGAR string
      598M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:149059111
      EDM10118
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,241.9 bits
    • Similarity
      99.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EDM10118
      100% cov
    • Alignment Length
      598 aa
    • CIGAR string
      102MN191MN55MN113MN61MN71M mismatches: 5 - insertions: 0 - deletions: 0
  • Cricetulus griseus

    Cricetulus griseus

    • Public DB hit
      GI:81893090
      Q6VVX2
      1 of 2 hits reported for Cricetulus griseus.
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,209.1 bits
    • Similarity
      99.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      Q6VVX2
      100% cov
    • Alignment Length
      598 aa
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:14165452
      NP_112729
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,193.7 bits
    • Similarity
      97.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_112729
      100% cov
    • Alignment Length
      598 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:11967329
      AAG42049
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,190.3 bits
    • Similarity
      97.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAG42049
      100% cov
    • Alignment Length
      598 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73952207
      XP_849925
    • Hit length
      624 aa
    • E Value
      0E0
    • BLAST Score
      1,189.1 bits
    • Similarity
      94.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_849925
      100% cov
    • Alignment Length
      624 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291413640
      XP_002723078
    • Hit length
      598 aa
    • E Value
      0E0
    • BLAST Score
      1,184.9 bits
    • Similarity
      97.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002723078
      100% cov
    • Alignment Length
      598 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301763683
      XP_002917266
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      752 aa
    • E Value
      0E0
    • BLAST Score
      1,184.5 bits
    • Similarity
      94.39%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002917266
      82.98% cov
    • Alignment Length
      624 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233861
      XP_003266123
    • Hit length
      747 aa
    • E Value
      0E0
    • BLAST Score
      1,180.2 bits
    • Similarity
      93.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003266123
      83.53% cov
    • Alignment Length
      624 aa
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder

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