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Search for Biological Sequences disclosed in Patents

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Data obtained from: DPMA Mega Documents
114 sequences found in this patent (in total)

Displaying 1 - 10 of 114 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
402
Type
DNA
Locations
Undetermined

Declared organism:
Xanthomonas axonopodis

Determined organism:
  • Xanthomonas axonopodis

    Xanthomonas axonopodis

    • Public DB hit
      GI:117643757
      EF050509
      1 of 3 hits reported for Xanthomonas axonopodis.
    • Hit length
      402 bp
    • E Value
      0E0
    • BLAST Score
      743.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EF050509
      100% cov
    • Alignment Length
      402 bp
    • CIGAR string
      402M mismatches: 0 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis pv. glycines

    Xanthomonas axonopodis pv. glycines

    • Public DB hit
      GI:30524887
      AF499777
    • Hit length
      29,206 bp
    • E Value
      0E0
    • BLAST Score
      743.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF499777
      1.38% cov
    • Alignment Length
      402 bp
    • CIGAR string
      402M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:117643771
      EF042294
      1 of 3 hits reported for synthetic construct.
    • Hit length
      402 bp
    • E Value
      0E0
    • BLAST Score
      732.4 bits
    • Similarity
      99.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EF042294
      100% cov
    • Alignment Length
      402 bp
  • Xanthomonas axonopodis pv. citri str. 306

    Xanthomonas axonopodis pv. citri str. 306

    • Public DB hit
      GI:21240769
      AE008923
    • Hit length
      5,175,554 bp
    • E Value
      1.14E-174
    • BLAST Score
      621.6 bits
    • Similarity
      94.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AE008923
      0.01% cov
    • Alignment Length
      414 bp
  • Xanthomonas citri subsp. malvacearum

    Xanthomonas citri subsp. malvacearum

    • Public DB hit
      GI:109648387
      DQ643828
    • Hit length
      402 bp
    • E Value
      1.22E-124
    • BLAST Score
      455.4 bits
    • Similarity
      87.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      DQ643828
      100% cov
    • Alignment Length
      417 bp
  • Xanthomonas oryzae pv. oryzae MAFF 311018

    Xanthomonas oryzae pv. oryzae MAFF 311018

    • Public DB hit
      GI:84365597
      AP008229
      1 of 2 hits reported for Xanthomonas oryzae pv. oryzae MAFF 311018.
    • Hit length
      4,940,217 bp
    • E Value
      4.78E-64
    • BLAST Score
      254.1 bits
    • Similarity
      80.43%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 1
      87.81% cov
      AP008229
      0.01% cov
    • Alignment Length
      368 bp
  • Xanthomonas oryzae pv. oryzae

    Xanthomonas oryzae pv. oryzae

    • Public DB hit
      GI:23428392
      AY055110
      1 of 8 hits reported for Xanthomonas oryzae pv. oryzae.
    • Hit length
      100,258 bp
    • E Value
      4.78E-64
    • BLAST Score
      254.1 bits
    • Similarity
      80.43%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 1
      87.81% cov
      AY055110
      0.35% cov
    • Alignment Length
      368 bp
  • Xanthomonas oryzae pv. oryzae KACC 10331

    Xanthomonas oryzae pv. oryzae KACC 10331

    • Public DB hit
      GI:58424217
      AE013598
    • Hit length
      4,941,439 bp
    • E Value
      4.78E-64
    • BLAST Score
      254.1 bits
    • Similarity
      80.43%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 1
      87.81% cov
      AE013598
      0.01% cov
    • Alignment Length
      368 bp
  • Xanthomonas oryzae pv. oryzae PXO99A

    Xanthomonas oryzae pv. oryzae PXO99A

    • Public DB hit
      GI:188518722
      CP000967
    • Hit length
      5,240,075 bp
    • E Value
      2.22E-62
    • BLAST Score
      248.6 bits
    • Similarity
      80.16%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 1
      87.81% cov
      CP000967
      0.01% cov
    • Alignment Length
      368 bp
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:166359592
      EU377742
    • Hit length
      405 bp
    • E Value
      4.85E-54
    • BLAST Score
      220.9 bits
    • Similarity
      80.06%
    • Coverage
      79.6%
    • Alignment (schematic)

      SEQ ID NO 1
      79.6% cov
      EU377742
      77.53% cov
    • Alignment Length
      331 bp
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
133
Type
peptide
Locations
Undetermined

Declared organism:
Xanthomonas axonopodis

Determined organism:
  • Xanthomonas axonopodis pv. glycines

    Xanthomonas axonopodis pv. glycines

    • Public DB hit
      GI:30524889
      AAP34334
    • Hit length
      133 aa
    • E Value
      1.45E-63
    • BLAST Score
      246.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAP34334
      100% cov
    • Alignment Length
      133 aa
    • CIGAR string
      133M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:117643772
      ABK51589
      1 of 3 hits reported for synthetic construct.
    • Hit length
      133 aa
    • E Value
      4.5E-63
    • BLAST Score
      244.6 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABK51589
      100% cov
    • Alignment Length
      133 aa
    • CIGAR string
      43MN89M mismatches: 1 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis

    Xanthomonas axonopodis

    • Public DB hit
      GI:149132068
      ABR20896
      1 of 2 hits reported for Xanthomonas axonopodis.
    • Hit length
      133 aa
    • E Value
      1.57E-62
    • BLAST Score
      243 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABR20896
      100% cov
    • Alignment Length
      133 aa
    • CIGAR string
      50MN82M mismatches: 1 - insertions: 0 - deletions: 0
  • Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535

    Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535

    • Public DB hit
      GI:294668073
      ZP_06733189
    • Hit length
      134 aa
    • E Value
      1.31E-37
    • BLAST Score
      160.2 bits
    • Similarity
      84.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ZP_06733189
      100% cov
    • Alignment Length
      134 aa
  • Xanthomonas axonopodis pv. citri str. 306

    Xanthomonas axonopodis pv. citri str. 306

    • Public DB hit
      GI:21241189
      NP_640771
    • Hit length
      137 aa
    • E Value
      5.32E-35
    • BLAST Score
      151.4 bits
    • Similarity
      90.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_640771
      100% cov
    • Alignment Length
      137 aa
  • Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122

    Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122

    • Public DB hit
      GI:294625826
      ZP_06704442
    • Hit length
      133 aa
    • E Value
      9.95E-35
    • BLAST Score
      150.6 bits
    • Similarity
      87.02%
    • Coverage
      98.5%
    • Alignment (schematic)

      SEQ ID NO 2
      98.5% cov
      ZP_06704442
      97.74% cov
    • Alignment Length
      131 aa
  • Xanthomonas citri subsp. malvacearum

    Xanthomonas citri subsp. malvacearum

    • Public DB hit
      GI:109648388
      ABG36696
    • Hit length
      133 aa
    • E Value
      1.28E-31
    • BLAST Score
      140.2 bits
    • Similarity
      83.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ABG36696
      100% cov
    • Alignment Length
      137 aa
Occurrence
13 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
11
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
14
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
2,194
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:20237
      X51910
    • Hit length
      3,192 bp
    • E Value
      0E0
    • BLAST Score
      3,993.6 bits
    • Similarity
      99.54%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 5
      99.95% cov
      X51910
      68.67% cov
    • Alignment Length
      2,197 bp
    • CIGAR string
      976MN114MI72M3D203MDMI74MI576MIMD170M1H mismatches: 1 - insertions: 4 - deletions: 5
  • Binary vector pINDEX2

    Binary vector pINDEX2

    • Public DB hit
      GI:11559666
      AF294980
    • Hit length
      14,230 bp
    • E Value
      0E0
    • BLAST Score
      3,977 bits
    • Similarity
      99.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF294980
      15.44% cov
    • Alignment Length
      2,202 bp
    • CIGAR string
      167M2I2MIMI806MN114MI72M3D203MDMI74MI576MIMD171M mismatches: 1 - insertions: 8 - deletions: 5
  • Binary vector pINDEX1

    Binary vector pINDEX1

    • Public DB hit
      GI:11559663
      AF294979
    • Hit length
      14,203 bp
    • E Value
      0E0
    • BLAST Score
      3,977 bits
    • Similarity
      99.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AF294979
      15.47% cov
    • Alignment Length
      2,202 bp
    • CIGAR string
      167M2I2MIMI806MN114MI72M3D203MDMI74MI576MIMD171M mismatches: 1 - insertions: 8 - deletions: 5
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:26017274
      AP004674
    • Hit length
      144,741 bp
    • E Value
      0E0
    • BLAST Score
      3,914.2 bits
    • Similarity
      98.86%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 5
      99.95% cov
      AP004674
      1.52% cov
    • Alignment Length
      2,197 bp
Occurrence
1116 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
1,179
Type
DNA
Locations
Undetermined

Declared organism:
Oryza sativa

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:32487386
      AL606456
    • Hit length
      133,331 bp
    • E Value
      0E0
    • BLAST Score
      2,167.2 bits
    • Similarity
      99.83%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AL606456
      0.88% cov
    • Alignment Length
      1,179 bp
    • CIGAR string
      223MN196MN758M mismatches: 2 - insertions: 0 - deletions: 0
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:90399028
      AL732349
      1 of 2 hits reported for Oryza sativa Indica Group.
    • Hit length
      100,836 bp
    • E Value
      0E0
    • BLAST Score
      2,122.9 bits
    • Similarity
      99.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AL732349
      1.17% cov
    • Alignment Length
      1,179 bp
    • CIGAR string
      223MN15MN135MN14MN29MN8MN7MN13MN564MN2MN159M mismatches: 10 - insertions: 0 - deletions: 0
Occurrence
43 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
402
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:117643771
      EF042294
      1 of 3 hits reported for synthetic construct.
    • Hit length
      402 bp
    • E Value
      0E0
    • BLAST Score
      743.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      EF042294
      100% cov
    • Alignment Length
      402 bp
    • CIGAR string
      402M mismatches: 0 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis

    Xanthomonas axonopodis

    • Public DB hit
      GI:117643757
      EF050509
      1 of 3 hits reported for Xanthomonas axonopodis.
    • Hit length
      402 bp
    • E Value
      0E0
    • BLAST Score
      732.4 bits
    • Similarity
      99.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      EF050509
      100% cov
    • Alignment Length
      402 bp
    • CIGAR string
      129M2N271M mismatches: 2 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis pv. glycines

    Xanthomonas axonopodis pv. glycines

    • Public DB hit
      GI:30524887
      AF499777
    • Hit length
      29,206 bp
    • E Value
      0E0
    • BLAST Score
      732.4 bits
    • Similarity
      99.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF499777
      1.38% cov
    • Alignment Length
      402 bp
    • CIGAR string
      129M2N271M mismatches: 2 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis pv. citri str. 306

    Xanthomonas axonopodis pv. citri str. 306

    • Public DB hit
      GI:21240769
      AE008923
    • Hit length
      5,175,554 bp
    • E Value
      2.46E-171
    • BLAST Score
      610.5 bits
    • Similarity
      93.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AE008923
      0.01% cov
    • Alignment Length
      414 bp
  • Xanthomonas citri subsp. malvacearum

    Xanthomonas citri subsp. malvacearum

    • Public DB hit
      GI:109648387
      DQ643828
    • Hit length
      402 bp
    • E Value
      2.64E-121
    • BLAST Score
      444.3 bits
    • Similarity
      87.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      DQ643828
      100% cov
    • Alignment Length
      417 bp
  • Xanthomonas oryzae pv. oryzae MAFF 311018

    Xanthomonas oryzae pv. oryzae MAFF 311018

    • Public DB hit
      GI:84365597
      AP008229
      1 of 2 hits reported for Xanthomonas oryzae pv. oryzae MAFF 311018.
    • Hit length
      4,940,217 bp
    • E Value
      2.21E-67
    • BLAST Score
      265.2 bits
    • Similarity
      80.98%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 7
      87.81% cov
      AP008229
      0.01% cov
    • Alignment Length
      368 bp
  • Xanthomonas oryzae pv. oryzae

    Xanthomonas oryzae pv. oryzae

    • Public DB hit
      GI:23428392
      AY055110
      1 of 8 hits reported for Xanthomonas oryzae pv. oryzae.
    • Hit length
      100,258 bp
    • E Value
      2.21E-67
    • BLAST Score
      265.2 bits
    • Similarity
      80.98%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 7
      87.81% cov
      AY055110
      0.35% cov
    • Alignment Length
      368 bp
  • Xanthomonas oryzae pv. oryzae KACC 10331

    Xanthomonas oryzae pv. oryzae KACC 10331

    • Public DB hit
      GI:58424217
      AE013598
    • Hit length
      4,941,439 bp
    • E Value
      2.21E-67
    • BLAST Score
      265.2 bits
    • Similarity
      80.98%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 7
      87.81% cov
      AE013598
      0.01% cov
    • Alignment Length
      368 bp
  • Xanthomonas oryzae pv. oryzae PXO99A

    Xanthomonas oryzae pv. oryzae PXO99A

    • Public DB hit
      GI:188518722
      CP000967
    • Hit length
      5,240,075 bp
    • E Value
      1.03E-65
    • BLAST Score
      259.7 bits
    • Similarity
      80.71%
    • Coverage
      87.81%
    • Alignment (schematic)

      SEQ ID NO 7
      87.81% cov
      CP000967
      0.01% cov
    • Alignment Length
      368 bp
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:166359592
      EU377742
    • Hit length
      405 bp
    • E Value
      2.24E-57
    • BLAST Score
      232 bits
    • Similarity
      80.66%
    • Coverage
      79.6%
    • Alignment (schematic)

      SEQ ID NO 7
      79.6% cov
      EU377742
      77.53% cov
    • Alignment Length
      331 bp
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
133
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:117643772
      ABK51589
      1 of 3 hits reported for synthetic construct.
    • Hit length
      133 aa
    • E Value
      5.74E-64
    • BLAST Score
      247.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ABK51589
      100% cov
    • Alignment Length
      133 aa
    • CIGAR string
      133M mismatches: 0 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis pv. glycines

    Xanthomonas axonopodis pv. glycines

    • Public DB hit
      GI:30524889
      AAP34334
    • Hit length
      133 aa
    • E Value
      4.5E-63
    • BLAST Score
      244.6 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAP34334
      100% cov
    • Alignment Length
      133 aa
    • CIGAR string
      43MN89M mismatches: 1 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis

    Xanthomonas axonopodis

    • Public DB hit
      GI:149132068
      ABR20896
      1 of 2 hits reported for Xanthomonas axonopodis.
    • Hit length
      133 aa
    • E Value
      4.29E-62
    • BLAST Score
      241.5 bits
    • Similarity
      98.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ABR20896
      100% cov
    • Alignment Length
      133 aa
    • CIGAR string
      43MN6MN82M mismatches: 2 - insertions: 0 - deletions: 0
  • Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535

    Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535

    • Public DB hit
      GI:294668073
      ZP_06733189
    • Hit length
      134 aa
    • E Value
      7.61E-37
    • BLAST Score
      157.5 bits
    • Similarity
      83.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_06733189
      100% cov
    • Alignment Length
      134 aa
  • Xanthomonas axonopodis pv. citri str. 306

    Xanthomonas axonopodis pv. citri str. 306

    • Public DB hit
      GI:21241189
      NP_640771
    • Hit length
      137 aa
    • E Value
      1.68E-34
    • BLAST Score
      149.8 bits
    • Similarity
      89.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_640771
      100% cov
    • Alignment Length
      137 aa
  • Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122

    Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122

    • Public DB hit
      GI:294625826
      ZP_06704442
    • Hit length
      133 aa
    • E Value
      3.12E-34
    • BLAST Score
      149.1 bits
    • Similarity
      86.26%
    • Coverage
      98.5%
    • Alignment (schematic)

      SEQ ID NO 8
      98.5% cov
      ZP_06704442
      97.74% cov
    • Alignment Length
      131 aa
  • Xanthomonas citri subsp. malvacearum

    Xanthomonas citri subsp. malvacearum

    • Public DB hit
      GI:109648388
      ABG36696
    • Hit length
      133 aa
    • E Value
      4.25E-31
    • BLAST Score
      138.7 bits
    • Similarity
      83.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ABG36696
      100% cov
    • Alignment Length
      137 aa
Occurrence
7 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
378
Type
DNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:117643767
      EF042292
      1 of 3 hits reported for synthetic construct.
    • Hit length
      378 bp
    • E Value
      0E0
    • BLAST Score
      699.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      EF042292
      100% cov
    • Alignment Length
      378 bp
    • CIGAR string
      378M mismatches: 0 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis

    Xanthomonas axonopodis

    • Public DB hit
      GI:117643757
      EF050509
      1 of 3 hits reported for Xanthomonas axonopodis.
    • Hit length
      402 bp
    • E Value
      1.08E-164
    • BLAST Score
      588.4 bits
    • Similarity
      94.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      EF050509
      100% cov
    • Alignment Length
      402 bp
    • CIGAR string
      297M8I3M6IM2IM2I4M3I6M3I66M mismatches: 0 - insertions: 24 - deletions: 0
  • Xanthomonas axonopodis pv. glycines

    Xanthomonas axonopodis pv. glycines

    • Public DB hit
      GI:30524887
      AF499777
    • Hit length
      29,206 bp
    • E Value
      1.08E-164
    • BLAST Score
      588.4 bits
    • Similarity
      94.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF499777
      1.38% cov
    • Alignment Length
      402 bp
    • CIGAR string
      297M8I3M6IM2IM2I4M3I6M3I66M mismatches: 0 - insertions: 24 - deletions: 0
  • Xanthomonas axonopodis pv. citri str. 306

    Xanthomonas axonopodis pv. citri str. 306

    • Public DB hit
      GI:21240769
      AE008923
    • Hit length
      5,175,554 bp
    • E Value
      1.12E-139
    • BLAST Score
      505.3 bits
    • Similarity
      94.03%
    • Coverage
      88.1%
    • Alignment (schematic)

      SEQ ID NO 9
      88.1% cov
      AE008923
      0.01% cov
    • Alignment Length
      335 bp
  • Xanthomonas citri subsp. malvacearum

    Xanthomonas citri subsp. malvacearum

    • Public DB hit
      GI:109648387
      DQ643828
    • Hit length
      402 bp
    • E Value
      2.56E-96
    • BLAST Score
      361.2 bits
    • Similarity
      86.98%
    • Coverage
      88.1%
    • Alignment (schematic)

      SEQ ID NO 9
      88.1% cov
      DQ643828
      79.85% cov
    • Alignment Length
      338 bp
  • Xanthomonas oryzae pv. oryzae MAFF 311018

    Xanthomonas oryzae pv. oryzae MAFF 311018

    • Public DB hit
      GI:84365597
      AP008229
      1 of 2 hits reported for Xanthomonas oryzae pv. oryzae MAFF 311018.
    • Hit length
      4,940,217 bp
    • E Value
      2.73E-51
    • BLAST Score
      211.6 bits
    • Similarity
      80.46%
    • Coverage
      78.31%
    • Alignment (schematic)

      SEQ ID NO 9
      78.31% cov
      AP008229
      0.01% cov
    • Alignment Length
      307 bp
  • Xanthomonas oryzae pv. oryzae

    Xanthomonas oryzae pv. oryzae

    • Public DB hit
      GI:23428392
      AY055110
      1 of 8 hits reported for Xanthomonas oryzae pv. oryzae.
    • Hit length
      100,258 bp
    • E Value
      2.73E-51
    • BLAST Score
      211.6 bits
    • Similarity
      80.46%
    • Coverage
      78.31%
    • Alignment (schematic)

      SEQ ID NO 9
      78.31% cov
      AY055110
      0.29% cov
    • Alignment Length
      307 bp
  • Xanthomonas oryzae pv. oryzae KACC 10331

    Xanthomonas oryzae pv. oryzae KACC 10331

    • Public DB hit
      GI:58424217
      AE013598
    • Hit length
      4,941,439 bp
    • E Value
      2.73E-51
    • BLAST Score
      211.6 bits
    • Similarity
      80.46%
    • Coverage
      78.31%
    • Alignment (schematic)

      SEQ ID NO 9
      78.31% cov
      AE013598
      0.01% cov
    • Alignment Length
      307 bp
  • Xanthomonas oryzae pv. oryzae PXO99A

    Xanthomonas oryzae pv. oryzae PXO99A

    • Public DB hit
      GI:188518722
      CP000967
    • Hit length
      5,240,075 bp
    • E Value
      1.27E-49
    • BLAST Score
      206.1 bits
    • Similarity
      80.13%
    • Coverage
      78.31%
    • Alignment (schematic)

      SEQ ID NO 9
      78.31% cov
      CP000967
      0.01% cov
    • Alignment Length
      307 bp
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:166359592
      EU377742
    • Hit length
      405 bp
    • E Value
      2.14E-42
    • BLAST Score
      182.1 bits
    • Similarity
      78.83%
    • Coverage
      78.31%
    • Alignment (schematic)

      SEQ ID NO 9
      78.31% cov
      EU377742
      71.6% cov
    • Alignment Length
      307 bp
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
125
Type
peptide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:117643768
      ABK51587
      1 of 3 hits reported for synthetic construct.
    • Hit length
      125 aa
    • E Value
      1.68E-59
    • BLAST Score
      233 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABK51587
      100% cov
    • Alignment Length
      125 aa
    • CIGAR string
      125M mismatches: 0 - insertions: 0 - deletions: 0
  • Xanthomonas axonopodis

    Xanthomonas axonopodis

    • Public DB hit
      GI:117643770
      ABK51588
      1 of 2 hits reported for Xanthomonas axonopodis.
    • Hit length
      121 aa
    • E Value
      7.79E-42
    • BLAST Score
      174.1 bits
    • Similarity
      92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABK51588
      100% cov
    • Alignment Length
      125 aa
    • CIGAR string
      99M4N2D2N2M2D14M mismatches: 6 - insertions: 0 - deletions: 4
  • Xanthomonas axonopodis pv. glycines

    Xanthomonas axonopodis pv. glycines

    • Public DB hit
      GI:30524889
      AAP34334
    • Hit length
      133 aa
    • E Value
      6.7E-41
    • BLAST Score
      171 bits
    • Similarity
      90.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAP34334
      100% cov
    • Alignment Length
      133 aa
    • CIGAR string
      99M4N8I22M mismatches: 4 - insertions: 8 - deletions: 0
  • Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535

    Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535

    • Public DB hit
      GI:294668073
      ZP_06733189
    • Hit length
      134 aa
    • E Value
      1.27E-32
    • BLAST Score
      143.7 bits
    • Similarity
      75.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_06733189
      100% cov
    • Alignment Length
      134 aa
  • Xanthomonas axonopodis pv. citri str. 306

    Xanthomonas axonopodis pv. citri str. 306

    • Public DB hit
      GI:21241189
      NP_640771
    • Hit length
      137 aa
    • E Value
      9.62E-32
    • BLAST Score
      140.6 bits
    • Similarity
      94.95%
    • Coverage
      79.2%
    • Alignment (schematic)

      SEQ ID NO 10
      79.2% cov
      NP_640771
      72.26% cov
    • Alignment Length
      99 aa
  • Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122

    Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122

    • Public DB hit
      GI:294625826
      ZP_06704442
    • Hit length
      133 aa
    • E Value
      6.84E-30
    • BLAST Score
      134.4 bits
    • Similarity
      77.86%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 10
      98.4% cov
      ZP_06704442
      97.74% cov
    • Alignment Length
      131 aa
  • Xanthomonas citri subsp. malvacearum

    Xanthomonas citri subsp. malvacearum

    • Public DB hit
      GI:109648388
      ABG36696
    • Hit length
      133 aa
    • E Value
      1.83E-28
    • BLAST Score
      129.8 bits
    • Similarity
      87.88%
    • Coverage
      79.2%
    • Alignment (schematic)

      SEQ ID NO 10
      79.2% cov
      ABG36696
      71.43% cov
    • Alignment Length
      99 aa
Occurrence
7 times in PatSeqDB
Tools
PatSeq Finder

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