Patents
US 2005/0032730 A1

Pharmaceutical Composition Containing A Stabilised Mrna Optimised For Translation In Its Coding Regions

Patent Application
US 2005/0032730 A1
067-662-446-613-578
Data obtained from: USPTO Fulltext
13 sequences found in this patent (in total)

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Download sequences in fasta format: 2 peptides 4 nucleotides 7 RNAs

Displaying 1 - 10 of 13 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
774
Sequence Type
nucleotide
Locations
Drawings
Declared organism
unidentified influenza virus
Determined organism
  • Influenza A virus (A/reassortant/NIBRG-14(Viet Nam/1194/2004 x Puerto Rico/8/1934)(H5N1))

    Influenza A virus (A/reassortant/NIBRG-14(Viet Nam/1194/2004 x Puerto Rico/8/1934)(H5N1))

    • Public DB hit
      GI:256259587
      GQ454867
    • Hit length
      995 bp
    • E Value
      0E0
    • BLAST Score
      1,410.1 bits
    • Similarity
      100%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      GQ454867
      76.68% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H763M5H mismatches: 0 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8/1934(H1N1))

    • Public DB hit
      GI:60788
      V01099
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,410.1 bits
    • Similarity
      100%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      V01099
      74.29% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H763M5H mismatches: 0 - insertions: 0 - deletions: 0
  • Influenza A virus (A/hvPR8/34(H1N1))

    Influenza A virus (A/hvPR8/34(H1N1))

    • Public DB hit
      GI:145322840
      EF190977
    • Hit length
      1,027 bp
    • E Value
      0E0
    • BLAST Score
      1,399 bits
    • Similarity
      99.74%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      EF190977
      74.29% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H248MN264MN249M5H mismatches: 2 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-V24/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-V24/1934(H1N1))

    • Public DB hit
      GI:323697403
      CY084183
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084183
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV8/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV8/1934(H1N1))

    • Public DB hit
      GI:323697384
      CY084175
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084175
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV7/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV7/1934(H1N1))

    • Public DB hit
      GI:323697365
      CY084167
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084167
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV6/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV6/1934(H1N1))

    • Public DB hit
      GI:323697346
      CY084159
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084159
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV5/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV5/1934(H1N1))

    • Public DB hit
      GI:323697327
      CY084151
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084151
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV4/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV4/1934(H1N1))

    • Public DB hit
      GI:323697308
      CY084143
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084143
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV3/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV3/1934(H1N1))

    • Public DB hit
      GI:323697289
      CY084135
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084135
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV2/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV2/1934(H1N1))

    • Public DB hit
      GI:323697270
      CY084127
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084127
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-KV1/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-KV1/1934(H1N1))

    • Public DB hit
      GI:323697251
      CY084119
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084119
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-JV18/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-JV18/1934(H1N1))

    • Public DB hit
      GI:323696934
      CY084111
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084111
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-JV9/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-JV9/1934(H1N1))

    • Public DB hit
      GI:323696915
      CY084103
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084103
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-JV3/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-JV3/1934(H1N1))

    • Public DB hit
      GI:323696896
      CY084095
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084095
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-JV2/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-JV2/1934(H1N1))

    • Public DB hit
      GI:323696877
      CY084087
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084087
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-JV1/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-JV1/1934(H1N1))

    • Public DB hit
      GI:323696437
      CY084079
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084079
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-CV10/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-CV10/1934(H1N1))

    • Public DB hit
      GI:323696418
      CY084071
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084071
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-CV9/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-CV9/1934(H1N1))

    • Public DB hit
      GI:323696399
      CY084063
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084063
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-CV8/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-CV8/1934(H1N1))

    • Public DB hit
      GI:323696380
      CY084055
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084055
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-CV7/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-CV7/1934(H1N1))

    • Public DB hit
      GI:323696127
      CY084047
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084047
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-CV6/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-CV6/1934(H1N1))

    • Public DB hit
      GI:323696108
      CY084039
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084039
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-CV2/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-CV2/1934(H1N1))

    • Public DB hit
      GI:323696070
      CY084023
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084023
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-CV1/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-CV1/1934(H1N1))

    • Public DB hit
      GI:323696051
      CY084015
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084015
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza A virus (A/Puerto Rico/8-WG/1934(H1N1))

    Influenza A virus (A/Puerto Rico/8-WG/1934(H1N1))

    • Public DB hit
      GI:323696032
      CY084007
    • Hit length
      1,002 bp
    • E Value
      0E0
    • BLAST Score
      1,393.5 bits
    • Similarity
      99.61%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 1
      98.58% cov
      CY084007
      76.15% cov
    • Alignment Length
      763 bp
    • CIGAR string
      6H36MN476MN119MN129M5H mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
28 times in PatSeqDB
Tools
SEQ ID NO
2
Length
252
Sequence Type
peptide
Locations
Drawings
Declared organism
unidentified influenza virus
Determined organism
Occurrence
286 times in PatSeqDB
Tools
SEQ ID NO
3
Length
775
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    • Public DB hit
      GI:295445886
      HM142735
    • Hit length
      1,027 bp
    • E Value
      6.62E-145
    • BLAST Score
      523.7 bits
    • Similarity
      79.35%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      HM142735
      74.29% cov
    • Alignment Length
      775 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN5MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2M2N11MN4MN2MN5MN2MN5MN2MN5MN2MD2M2N2MI2MN6MDNMIN4MN2MN2MN5MN2MN5MN2MN2MN14MDMIMN8MN2MN5MN2MN5MN5MN5MN2MN8MN2MN2MD2NMI5MN3M2N30MN2MN8MN2MN23MN2MN2MN5MN14MN2M2IMDMD2MN8MN2MN2MN11MN2MN2MN5MN17MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 12 - deletions: 12
  • Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    • Public DB hit
      GI:313510055
      CY077545
    • Hit length
      1,002 bp
    • E Value
      1.43E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY077545
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 13 - deletions: 13
  • Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    • Public DB hit
      GI:313509907
      CY077538
    • Hit length
      1,002 bp
    • E Value
      1.43E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY077538
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 13 - deletions: 13
  • Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    • Public DB hit
      GI:313509874
      CY077522
    • Hit length
      1,002 bp
    • E Value
      1.43E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY077522
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 13 - deletions: 13
  • Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    • Public DB hit
      GI:313509609
      CY077514
    • Hit length
      1,002 bp
    • E Value
      1.43E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY077514
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 13 - deletions: 13
  • Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    • Public DB hit
      GI:313508095
      CY077450
    • Hit length
      1,002 bp
    • E Value
      1.43E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY077450
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 13 - deletions: 13
  • Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    • Public DB hit
      GI:315623987
      CY080184
    • Hit length
      1,002 bp
    • E Value
      1.44E-136
    • BLAST Score
      496 bits
    • Similarity
      78.71%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY080184
      76.15% cov
    • Alignment Length
      775 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN5MN5MN2MN2MN2MN11MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14MDMIMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN5MN2MN35MN5MN2MN14MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N10MN5MN2MN5MN5MN8MN9M6H mismatches: 141 - insertions: 12 - deletions: 12
  • Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    • Public DB hit
      GI:315623168
      CY079771
    • Hit length
      1,002 bp
    • E Value
      6.71E-135
    • BLAST Score
      490.5 bits
    • Similarity
      78.58%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY079771
      76.15% cov
    • Alignment Length
      775 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN5MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14MDMIMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN5MN2MN35MN5MN2MN14MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N10MN5MN2MN5MN5MN8MN9M6H mismatches: 142 - insertions: 12 - deletions: 12
  • Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    • Public DB hit
      GI:316368179
      CY079855
    • Hit length
      1,002 bp
    • E Value
      3.12E-133
    • BLAST Score
      484.9 bits
    • Similarity
      78.48%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY079855
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN5MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MIN2MD2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14MDMIMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN5MN2MN35MN5MN2MN14MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N10MN5MN2MN5MN5MN8MN9M6H mismatches: 141 - insertions: 13 - deletions: 13
  • Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    • Public DB hit
      GI:312603070
      CY077191
    • Hit length
      1,002 bp
    • E Value
      3.12E-133
    • BLAST Score
      484.9 bits
    • Similarity
      78.42%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      CY077191
      76.15% cov
    • Alignment Length
      774 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN2MN5MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14M2NMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN8MN2MN32MN5MN2MN2MN11MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN17MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 145 - insertions: 11 - deletions: 11
  • Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    • Public DB hit
      GI:115397025
      DQ997315
    • Hit length
      961 bp
    • E Value
      1.88E-130
    • BLAST Score
      475.7 bits
    • Similarity
      78.31%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 3
      98.58% cov
      DQ997315
      79.5% cov
    • Alignment Length
      779 bp
    • CIGAR string
      5H10MN2MN2MN8MN2MN2MN5MN2MD2NMI3MIN3MIN2M2D8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN5M2DMN2MN7MN3MN5MN2MN8M2NMN5MN2MN5MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2MN12MN4MN2MN5MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN2MN3MDNMIN4MN2MN2MN5MN2MN5MIMI2MN2MN14M2NMN5MN2MN2MN5MN2MN5MN2MN2MN8MN5MN2MN2MN2MD2NMI8M3N15MN2MN11MN2MN8MN29MN2MN5MN14MN2M2IMDMD2MN5MN2MN2MN2MN11MN2MN2MN5MN17MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN14MN9M6H mismatches: 139 - insertions: 15 - deletions: 15
  • Influenza A virus (A/chicken/Victoria/1985(H7N7))

    Influenza A virus (A/chicken/Victoria/1985(H7N7))

    • Public DB hit
      GI:324305
      M63523
    • Hit length
      1,027 bp
    • E Value
      6.76E-130
    • BLAST Score
      473.9 bits
    • Similarity
      78.17%
    • Coverage
      98.45%
    • Alignment (schematic)

      SEQ ID NO 3
      98.45% cov
      M63523
      74.29% cov
    • Alignment Length
      774 bp
    • CIGAR string
      6H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN2MN8MN2MN4MIMD2MN5MN3MNMN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2MN11M2N4MN2MN5MN2MN5MN2MN3MI3MN2MDMDN2MI2MN6MDNMINMN2MN2MN2MN5MN2MN5MN2MN2MN14M2NMN8MN2MN5MN2MN5MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N15MN2MN8MN2MN2MN35MN2MN2MN2MN2MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN5MN5MN8MN2MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 147 - insertions: 11 - deletions: 11
  • Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    • Public DB hit
      GI:291491603
      GU361301
    • Hit length
      960 bp
    • E Value
      1.13E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.86%
    • Coverage
      91.35%
    • Alignment (schematic)

      SEQ ID NO 3
      91.35% cov
      GU361301
      73.75% cov
    • Alignment Length
      719 bp
    • CIGAR string
      61H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN8MN2MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MIN5MD2M2N4MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN2MN2MN2MN2MN2MN2MN5MN13MN3MN2MN2MN2MN5MN8MN2MN5MN2MN2MN2MN2MN2MN6MNMDN2MI2MN6MDN2MI4MN2MN2MN5MN2MN5MN2MN2MN8MN5M2NMN2MN5MN2MN5MN2MN5MN5MN5MN2MN5MN2MN2MN3MDNMI8M2DMIMI29MN2MN8MN8MN5MN8MN5MN2MN11MN8MN2M2IMDMD2MN2MN5MN2MN14MN2MN2MN5MN17MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 130 - insertions: 11 - deletions: 11
  • Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    • Public DB hit
      GI:261734747
      CY048692
    • Hit length
      923 bp
    • E Value
      1.13E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.77%
    • Coverage
      91.35%
    • Alignment (schematic)

      SEQ ID NO 3
      91.35% cov
      CY048692
      76.71% cov
    • Alignment Length
      716 bp
    • CIGAR string
      61H8MN2MN11MN5MN2MN2MN2MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN2MN5MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14M2NMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN8MN2MN32MN5MN2MN2MN11MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 8 - deletions: 8
  • Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    • Public DB hit
      GI:296045426
      HM193599
    • Hit length
      973 bp
    • E Value
      5.26E-126
    • BLAST Score
      460.9 bits
    • Similarity
      78.66%
    • Coverage
      91.35%
    • Alignment (schematic)

      SEQ ID NO 3
      91.35% cov
      HM193599
      72.76% cov
    • Alignment Length
      717 bp
    • CIGAR string
      61H8MN2MN11MN5MN2MN2MN2MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN11MDN2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN8MN8MN2MN14MDMIMN2MN5MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN8MN2MN32MN2MN2MN2MN14MN5MN2M2ND2MIMN2MN5MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN6M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN14MN9M6H mismatches: 135 - insertions: 9 - deletions: 9
Occurrence
28 times in PatSeqDB
Tools
SEQ ID NO
4
Length
844
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    • Public DB hit
      GI:295445886
      HM142735
    • Hit length
      1,027 bp
    • E Value
      5.63E-141
    • BLAST Score
      510.8 bits
    • Similarity
      79.92%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      HM142735
      68.94% cov
    • Alignment Length
      717 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN5MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2M2N11MN4MN2MN5MN2MN5MN2MN5MN2MD2M2N2MI2MN6MDNMIN4MN2MN2MN5MN2MN5MN2MN2MN14MDMIMN8MN2MN5MN2MN5MN5MN5MN2MN8MN2MN2MD2NMI5MN3M2N30MN2MN8MN2MN23MN2MN2MN5MN14MN2M2IMDMD2MN8MN2MN2MN11MN2MN2MN5MN17MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 126 - insertions: 9 - deletions: 9
  • Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    • Public DB hit
      GI:313510055
      CY077545
    • Hit length
      1,002 bp
    • E Value
      1.22E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY077545
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 126 - insertions: 10 - deletions: 10
  • Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    • Public DB hit
      GI:313509907
      CY077538
    • Hit length
      1,002 bp
    • E Value
      1.22E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY077538
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 126 - insertions: 10 - deletions: 10
  • Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    • Public DB hit
      GI:313509874
      CY077522
    • Hit length
      1,002 bp
    • E Value
      1.22E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY077522
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 126 - insertions: 10 - deletions: 10
  • Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    • Public DB hit
      GI:313509609
      CY077514
    • Hit length
      1,002 bp
    • E Value
      1.22E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY077514
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 126 - insertions: 10 - deletions: 10
  • Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    • Public DB hit
      GI:313508095
      CY077450
    • Hit length
      1,002 bp
    • E Value
      1.22E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY077450
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 126 - insertions: 10 - deletions: 10
  • Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    • Public DB hit
      GI:315623987
      CY080184
    • Hit length
      1,002 bp
    • E Value
      1.23E-132
    • BLAST Score
      483.1 bits
    • Similarity
      79.22%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY080184
      70.66% cov
    • Alignment Length
      717 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN5MN5MN2MN2MN2MN11MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14MDMIMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN5MN2MN35MN5MN2MN14MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N10MN5MN2MN5MN5MN8MN9M6H mismatches: 131 - insertions: 9 - deletions: 9
  • Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    • Public DB hit
      GI:315623168
      CY079771
    • Hit length
      1,002 bp
    • E Value
      5.71E-131
    • BLAST Score
      477.6 bits
    • Similarity
      79.08%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY079771
      70.66% cov
    • Alignment Length
      717 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN5MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14MDMIMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN5MN2MN35MN5MN2MN14MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N10MN5MN2MN5MN5MN8MN9M6H mismatches: 132 - insertions: 9 - deletions: 9
  • Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    • Public DB hit
      GI:316368179
      CY079855
    • Hit length
      1,002 bp
    • E Value
      2.66E-129
    • BLAST Score
      472 bits
    • Similarity
      78.97%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY079855
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN5MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MIN2MD2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14MDMIMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN5MN2MN35MN5MN2MN14MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N10MN5MN2MN5MN5MN8MN9M6H mismatches: 131 - insertions: 10 - deletions: 10
  • Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    • Public DB hit
      GI:312603070
      CY077191
    • Hit length
      1,002 bp
    • E Value
      2.66E-129
    • BLAST Score
      472 bits
    • Similarity
      78.91%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY077191
      70.66% cov
    • Alignment Length
      716 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN2MN5MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14M2NMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN8MN2MN32MN5MN2MN2MN11MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN17MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 135 - insertions: 8 - deletions: 8
  • Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    • Public DB hit
      GI:291491603
      GU361301
    • Hit length
      960 bp
    • E Value
      1.24E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.86%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      GU361301
      73.75% cov
    • Alignment Length
      719 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN8MN2MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MIN5MD2M2N4MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN2MN2MN2MN2MN2MN2MN5MN13MN3MN2MN2MN2MN5MN8MN2MN5MN2MN2MN2MN2MN2MN6MNMDN2MI2MN6MDN2MI4MN2MN2MN5MN2MN5MN2MN2MN8MN5M2NMN2MN5MN2MN5MN2MN5MN5MN5MN2MN5MN2MN2MN3MDNMI8M2DMIMI29MN2MN8MN8MN5MN8MN5MN2MN11MN8MN2M2IMDMD2MN2MN5MN2MN14MN2MN2MN5MN17MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 130 - insertions: 11 - deletions: 11
  • Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    • Public DB hit
      GI:261734747
      CY048692
    • Hit length
      923 bp
    • E Value
      1.24E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.77%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      CY048692
      76.71% cov
    • Alignment Length
      716 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN2MN5MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN12MD2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN17MN2MN14M2NMN8MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN8MN2MN32MN5MN2MN2MN11MN5MN2M2ND2MIMN8MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN2MN3M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 136 - insertions: 8 - deletions: 8
  • Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    • Public DB hit
      GI:115397025
      DQ997315
    • Hit length
      961 bp
    • E Value
      1.24E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.89%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      DQ997315
      73.67% cov
    • Alignment Length
      720 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN5M2DMN2MN7MN3MN5MN2MN8M2NMN5MN2MN5MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2MN12MN4MN2MN5MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN2MN3MDNMIN4MN2MN2MN5MN2MN5MIMI2MN2MN14M2NMN5MN2MN2MN5MN2MN5MN2MN2MN8MN5MN2MN2MN2MD2NMI8M3N15MN2MN11MN2MN8MN29MN2MN5MN14MN2M2IMDMD2MN5MN2MN2MN2MN11MN2MN2MN5MN17MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN14MN9M6H mismatches: 128 - insertions: 12 - deletions: 12
  • Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    • Public DB hit
      GI:296045426
      HM193599
    • Hit length
      973 bp
    • E Value
      5.75E-126
    • BLAST Score
      460.9 bits
    • Similarity
      78.66%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      HM193599
      72.76% cov
    • Alignment Length
      717 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN5MN2MN2MN2MN8MN2MN4MN3MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN2MN2MN11MDN2MI2MN2MN2MN14MN2MN5MN2MN2MN5MN2MN2MN2MN3MNMDN2MI2MN2MN2MD2NMINMN2MN2MN2MN8MN8MN2MN14MDMIMN2MN5MN2MN5MN2MN11MN5MN2MN8MN2MN2M3N6MN2M2DMIMI5MN2MN8MN2MN8MN2MN32MN2MN2MN2MN14MN5MN2M2ND2MIMN2MN5MN2MN5MN8MN2MN2MN5MN2MN14MN11MN2MN2MN2MN6M2N3MN2MN2MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN14MN9M6H mismatches: 135 - insertions: 9 - deletions: 9
  • Influenza A virus (A/chicken/Victoria/1985(H7N7))

    Influenza A virus (A/chicken/Victoria/1985(H7N7))

    • Public DB hit
      GI:324305
      M63523
    • Hit length
      1,027 bp
    • E Value
      5.75E-126
    • BLAST Score
      460.9 bits
    • Similarity
      78.63%
    • Coverage
      83.89%
    • Alignment (schematic)

      SEQ ID NO 4
      83.89% cov
      M63523
      68.94% cov
    • Alignment Length
      716 bp
    • CIGAR string
      130H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN2MN8MN2MN4MIMD2MN5MN3MNMN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2MN11M2N4MN2MN5MN2MN5MN2MN3MI3MN2MDMDN2MI2MN6MDNMINMN2MN2MN2MN5MN2MN5MN2MN2MN14M2NMN8MN2MN5MN2MN5MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N15MN2MN8MN2MN2MN35MN2MN2MN2MN2MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN5MN5MN8MN2MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M6H mismatches: 137 - insertions: 8 - deletions: 8
Occurrence
28 times in PatSeqDB
Tools
SEQ ID NO
5
Length
942
Sequence Type
RNA
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
Occurrence
20 times in PatSeqDB
Tools
SEQ ID NO
6
Length
942
Sequence Type
RNA
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    • Public DB hit
      GI:295445886
      HM142735
    • Hit length
      1,027 bp
    • E Value
      8.11E-145
    • BLAST Score
      523.7 bits
    • Similarity
      79.35%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      HM142735
      74.29% cov
    • Alignment Length
      775 bp
    • CIGAR string
      51H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN5MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2M2N11MN4MN2MN5MN2MN5MN2MN5MN2MD2M2N2MI2MN6MDNMIN4MN2MN2MN5MN2MN5MN2MN2MN14MDMIMN8MN2MN5MN2MN5MN5MN5MN2MN8MN2MN2MD2NMI5MN3M2N30MN2MN8MN2MN23MN2MN2MN5MN14MN2M2IMDMD2MN8MN2MN2MN11MN2MN2MN5MN17MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M128H mismatches: 136 - insertions: 12 - deletions: 12
  • Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    • Public DB hit
      GI:313510055
      CY077545
    • Hit length
      1,002 bp
    • E Value
      1.75E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY077545
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      51H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M128H mismatches: 136 - insertions: 13 - deletions: 13
  • Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    • Public DB hit
      GI:313509907
      CY077538
    • Hit length
      1,002 bp
    • E Value
      1.75E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY077538
      76.15% cov
    • Alignment Length
      776 bp
    • CIGAR string
      51H9MN2MN2MN8MN2MN2MN5MN2MD2NMI3MNMD3MDMIMI8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M128H mismatches: 136 - insertions: 13 - deletions: 13
  • Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    • Public DB hit
      GI:313509874
      CY077522
    • Hit length
      1,002 bp
    • E Value
      1.75E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY077522
      76.15% cov
    • Alignment Length
      776 bp
  • Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    • Public DB hit
      GI:313509609
      CY077514
    • Hit length
      1,002 bp
    • E Value
      1.75E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY077514
      76.15% cov
    • Alignment Length
      776 bp
  • Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    • Public DB hit
      GI:313508095
      CY077450
    • Hit length
      1,002 bp
    • E Value
      1.75E-141
    • BLAST Score
      512.6 bits
    • Similarity
      79.12%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY077450
      76.15% cov
    • Alignment Length
      776 bp
  • Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    • Public DB hit
      GI:315623987
      CY080184
    • Hit length
      1,002 bp
    • E Value
      1.77E-136
    • BLAST Score
      496 bits
    • Similarity
      78.71%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY080184
      76.15% cov
    • Alignment Length
      775 bp
  • Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    • Public DB hit
      GI:315623168
      CY079771
    • Hit length
      1,002 bp
    • E Value
      8.22E-135
    • BLAST Score
      490.5 bits
    • Similarity
      78.58%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY079771
      76.15% cov
    • Alignment Length
      775 bp
  • Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    • Public DB hit
      GI:316368179
      CY079855
    • Hit length
      1,002 bp
    • E Value
      3.83E-133
    • BLAST Score
      484.9 bits
    • Similarity
      78.48%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY079855
      76.15% cov
    • Alignment Length
      776 bp
  • Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    • Public DB hit
      GI:312603070
      CY077191
    • Hit length
      1,002 bp
    • E Value
      3.83E-133
    • BLAST Score
      484.9 bits
    • Similarity
      78.42%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      CY077191
      76.15% cov
    • Alignment Length
      774 bp
  • Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    • Public DB hit
      GI:115397025
      DQ997315
    • Hit length
      961 bp
    • E Value
      2.3E-130
    • BLAST Score
      475.7 bits
    • Similarity
      78.31%
    • Coverage
      81.1%
    • Alignment (schematic)

      SEQ ID NO 6
      81.1% cov
      DQ997315
      79.5% cov
    • Alignment Length
      779 bp
  • Influenza A virus (A/chicken/Victoria/1985(H7N7))

    Influenza A virus (A/chicken/Victoria/1985(H7N7))

    • Public DB hit
      GI:324305
      M63523
    • Hit length
      1,027 bp
    • E Value
      8.28E-130
    • BLAST Score
      473.9 bits
    • Similarity
      78.17%
    • Coverage
      81%
    • Alignment (schematic)

      SEQ ID NO 6
      81% cov
      M63523
      74.29% cov
    • Alignment Length
      774 bp
  • Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    • Public DB hit
      GI:291491603
      GU361301
    • Hit length
      960 bp
    • E Value
      1.39E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.86%
    • Coverage
      75.16%
    • Alignment (schematic)

      SEQ ID NO 6
      75.16% cov
      GU361301
      73.75% cov
    • Alignment Length
      719 bp
  • Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    • Public DB hit
      GI:261734747
      CY048692
    • Hit length
      923 bp
    • E Value
      1.39E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.77%
    • Coverage
      75.16%
    • Alignment (schematic)

      SEQ ID NO 6
      75.16% cov
      CY048692
      76.71% cov
    • Alignment Length
      716 bp
  • Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    • Public DB hit
      GI:296045426
      HM193599
    • Hit length
      973 bp
    • E Value
      6.45E-126
    • BLAST Score
      460.9 bits
    • Similarity
      78.66%
    • Coverage
      75.16%
    • Alignment (schematic)

      SEQ ID NO 6
      75.16% cov
      HM193599
      72.76% cov
    • Alignment Length
      717 bp
Occurrence
20 times in PatSeqDB
Tools
SEQ ID NO
7
Length
1,011
Sequence Type
RNA
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    Influenza A virus (A/duck/Eastern China/216/2007(H4N6))

    • Public DB hit
      GI:295445886
      HM142735
    • Hit length
      1,027 bp
    • E Value
      6.79E-141
    • BLAST Score
      510.8 bits
    • Similarity
      79.92%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      HM142735
      68.94% cov
    • Alignment Length
      717 bp
    • CIGAR string
      175H8MN2MN11MN5MN2MN5MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMN2MN2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN5MN2MN2MN2MN2MN5MN13MN3MN2MN2M2N11MN4MN2MN5MN2MN5MN2MN5MN2MD2M2N2MI2MN6MDNMIN4MN2MN2MN5MN2MN5MN2MN2MN14MDMIMN8MN2MN5MN2MN5MN5MN5MN2MN8MN2MN2MD2NMI5MN3M2N30MN2MN8MN2MN23MN2MN2MN5MN14MN2M2IMDMD2MN8MN2MN2MN11MN2MN2MN5MN17MN8MN2MN2MN2MN5MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M128H mismatches: 126 - insertions: 9 - deletions: 9
  • Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    Influenza A virus (A/mallard/New Zealand/449-89/2004(mixed))

    • Public DB hit
      GI:313510055
      CY077545
    • Hit length
      1,002 bp
    • E Value
      1.47E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY077545
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      175H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M128H mismatches: 126 - insertions: 10 - deletions: 10
  • Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    Influenza A virus (A/mallard/New Zealand/449-84/2004(H3N2))

    • Public DB hit
      GI:313509907
      CY077538
    • Hit length
      1,002 bp
    • E Value
      1.47E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY077538
      70.66% cov
    • Alignment Length
      718 bp
    • CIGAR string
      175H8MN2MN11MN5MN2MN2MN2MN2MN2MN2MN2MN11MN2MN4MIMD2MN5MN5MN5MN2MN2MN6MDNMI2MN5MN5MN2M2NMI3MD2MN8MN2MN11MN5MN2MN8M2NMN5MN2MN2MN2MN8MN2MN2MN2MN5MN11MDN2MI2MN2MN2MN12MN4MN8MN2MN5MN2MN2MIN3MN2MDMDN2MI2MN6MDNMIN4MN2MN2MN5MN2MN8MN2MN8MN5M2NMN8MN8MN2MN2MN2MN5MN5MN2MN8MN2MN2MD2NMI5MN2M3N30MN2MN8MN8MN17MN2MN2MN5MN14MN2MDMNMI2MN8MN2MN2MN11MN2MN2MN23MN8MN2MN2MN2MN2MN2MN3M2N3MN5MN5MI2MND2MN2MN2MN2MN2M2N16MN2MN5MN5MN8MN9M128H mismatches: 126 - insertions: 10 - deletions: 10
  • Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-75/2004(H1N2))

    • Public DB hit
      GI:313509874
      CY077522
    • Hit length
      1,002 bp
    • E Value
      1.47E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY077522
      70.66% cov
    • Alignment Length
      718 bp
  • Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    Influenza A virus (A/mallard/New Zealand/449-68/2004(H1N2))

    • Public DB hit
      GI:313509609
      CY077514
    • Hit length
      1,002 bp
    • E Value
      1.47E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY077514
      70.66% cov
    • Alignment Length
      718 bp
  • Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    Influenza A virus (A/mallard/New Zealand/449-94/2004(H2N3))

    • Public DB hit
      GI:313508095
      CY077450
    • Hit length
      1,002 bp
    • E Value
      1.47E-137
    • BLAST Score
      499.7 bits
    • Similarity
      79.67%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY077450
      70.66% cov
    • Alignment Length
      718 bp
  • Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    Influenza A virus (A/northern pintail/Interior Alaska/8BM3739R1/2008(H8N4))

    • Public DB hit
      GI:315623987
      CY080184
    • Hit length
      1,002 bp
    • E Value
      1.48E-132
    • BLAST Score
      483.1 bits
    • Similarity
      79.22%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY080184
      70.66% cov
    • Alignment Length
      717 bp
  • Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM1327/2009(H8N4))

    • Public DB hit
      GI:315623168
      CY079771
    • Hit length
      1,002 bp
    • E Value
      6.89E-131
    • BLAST Score
      477.6 bits
    • Similarity
      79.08%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY079771
      70.66% cov
    • Alignment Length
      717 bp
  • Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    Influenza A virus (A/mallard/Interior Alaska/9BM2081/2009(N4))

    • Public DB hit
      GI:316368179
      CY079855
    • Hit length
      1,002 bp
    • E Value
      3.2E-129
    • BLAST Score
      472 bits
    • Similarity
      78.97%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY079855
      70.66% cov
    • Alignment Length
      718 bp
  • Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    Influenza A virus (A/mallard/Alberta/234/2007(H12N5))

    • Public DB hit
      GI:312603070
      CY077191
    • Hit length
      1,002 bp
    • E Value
      3.2E-129
    • BLAST Score
      472 bits
    • Similarity
      78.91%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY077191
      70.66% cov
    • Alignment Length
      716 bp
  • Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    Influenza A virus (A/aquatic bird/Korea/w344/2008(H5N2))

    • Public DB hit
      GI:291491603
      GU361301
    • Hit length
      960 bp
    • E Value
      1.49E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.86%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      GU361301
      73.75% cov
    • Alignment Length
      719 bp
  • Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    Influenza A virus (A/green-winged teal/Minnesota/Sg-00213/2007(H11N9))

    • Public DB hit
      GI:261734747
      CY048692
    • Hit length
      923 bp
    • E Value
      1.49E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.77%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      CY048692
      76.71% cov
    • Alignment Length
      716 bp
  • Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    Influenza A virus (A/chicken/Jilin/hj/2003(H5N1))

    • Public DB hit
      GI:115397025
      DQ997315
    • Hit length
      961 bp
    • E Value
      1.49E-127
    • BLAST Score
      466.5 bits
    • Similarity
      78.89%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      DQ997315
      73.67% cov
    • Alignment Length
      720 bp
  • Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    Influenza A virus (A/mallard/Alaska/44430-031/2008(H4N6))

    • Public DB hit
      GI:296045426
      HM193599
    • Hit length
      973 bp
    • E Value
      6.94E-126
    • BLAST Score
      460.9 bits
    • Similarity
      78.66%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      HM193599
      72.76% cov
    • Alignment Length
      717 bp
  • Influenza A virus (A/chicken/Victoria/1985(H7N7))

    Influenza A virus (A/chicken/Victoria/1985(H7N7))

    • Public DB hit
      GI:324305
      M63523
    • Hit length
      1,027 bp
    • E Value
      6.94E-126
    • BLAST Score
      460.9 bits
    • Similarity
      78.63%
    • Coverage
      70.03%
    • Alignment (schematic)

      SEQ ID NO 7
      70.03% cov
      M63523
      68.94% cov
    • Alignment Length
      716 bp
Occurrence
20 times in PatSeqDB
Tools
SEQ ID NO
8
Length
940
Sequence Type
nucleotide
Locations
Drawings
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:261823956
      NG_013243
      1 of 12 hits reported for Homo sapiens.
    • Hit length
      11,595 bp
    • E Value
      0E0
    • BLAST Score
      1,737 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NG_013243
      8.11% cov
    • Alignment Length
      940 bp
    • CIGAR string
      940M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:208968580
      AB464616
      1 of 7 hits reported for synthetic construct.
    • Hit length
      944 bp
    • E Value
      0E0
    • BLAST Score
      1,714.8 bits
    • Similarity
      100%
    • Coverage
      98.72%
    • Alignment (schematic)

      SEQ ID NO 8
      98.72% cov
      AB464616
      98.31% cov
    • Alignment Length
      928 bp
    • CIGAR string
      3H928M9H mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:149845503
      CU464045
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      67,704 bp
    • E Value
      0E0
    • BLAST Score
      1,687.1 bits
    • Similarity
      99.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CU464045
      1.39% cov
    • Alignment Length
      940 bp
    • CIGAR string
      97MN121MN13MN43MN150MN48MN62MN14MN374MN9M mismatches: 9 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711374
      XM_002832274
    • Hit length
      1,753 bp
    • E Value
      0E0
    • BLAST Score
      1,528.3 bits
    • Similarity
      96.64%
    • Coverage
      97.87%
    • Alignment (schematic)

      SEQ ID NO 8
      97.87% cov
      XM_002832274
      52.48% cov
    • Alignment Length
      922 bp
    • CIGAR string
      96M2N31MN14MN44MN28MDMI13MN14MN2MN24M2N29MN26M2N26MN6MN46MN11MN57MN41MN2MN31MN47MN4MN9MN4MN40MN220MN19MIMD5M20H mismatches: 27 - insertions: 2 - deletions: 2
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332245555
      XM_003271877
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,715 bp
    • E Value
      0E0
    • BLAST Score
      1,506.1 bits
    • Similarity
      95.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_003271877
      54.64% cov
    • Alignment Length
      941 bp
    • CIGAR string
      97MN10MD2MDMD2MN13MN13MN74MN13MN9MN7MN10MN13M2N29MN26M2N3M2N28MN26MN18MDMI3MN7MN18MN29MN50MN2MN8MN18MN34MN14MN16MN42MN25MN93MN27MN26MN57MN10MN26M mismatches: 36 - insertions: 1 - deletions: 4
Occurrence
28 times in PatSeqDB
Tools
SEQ ID NO
9
Length
308
Sequence Type
peptide
Locations
Drawings
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:148276977
      NP_004979
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      309 aa
    • E Value
      1.6E-177
    • BLAST Score
      627.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_004979
      99.68% cov
    • Alignment Length
      308 aa
    • CIGAR string
      308M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297711375
      XP_002832320
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      316 aa
    • E Value
      3.67E-163
    • BLAST Score
      579.3 bits
    • Similarity
      93.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_002832320
      99.68% cov
    • Alignment Length
      315 aa
    • CIGAR string
      30MN39MN4MN4M2N8MN9MN8MN8MN17MN3MN18MN25MN15MNMN2MNMN86MN2M7I10M mismatches: 18 - insertions: 7 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332245556
      XP_003271925
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      308 aa
    • E Value
      1.51E-161
    • BLAST Score
      573.9 bits
    • Similarity
      95.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_003271925
      99.68% cov
    • Alignment Length
      308 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114690556
      XP_529226
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      409 aa
    • E Value
      8.48E-155
    • BLAST Score
      551.6 bits
    • Similarity
      98.92%
    • Coverage
      89.94%
    • Alignment (schematic)

      SEQ ID NO 9
      89.94% cov
      XP_529226
      67.73% cov
    • Alignment Length
      277 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297305000
      XP_001099496
    • Hit length
      317 aa
    • E Value
      1.5E-128
    • BLAST Score
      464.2 bits
    • Similarity
      84.49%
    • Coverage
      95.78%
    • Alignment (schematic)

      SEQ ID NO 9
      95.78% cov
      XP_001099496
      95.58% cov
    • Alignment Length
      303 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296236657
      XP_002763426
    • Hit length
      490 aa
    • E Value
      3.17E-121
    • BLAST Score
      439.9 bits
    • Similarity
      80.32%
    • Coverage
      99.03%
    • Alignment (schematic)

      SEQ ID NO 9
      99.03% cov
      XP_002763426
      64.29% cov
    • Alignment Length
      315 aa
Occurrence
28 times in PatSeqDB
Tools
SEQ ID NO
10
Length
939
Sequence Type
RNA
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
Occurrence
20 times in PatSeqDB
Tools

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