Patents
US 6723506 B2

Method Of Identifying Pax8-ppar Gamma-nucleic Acid Molecules

Granted Patent
US 6723506 B2
066-880-479-891-135
Data obtained from: EMBL-EBI Pat NCBI GenBank DDBJ Pat
47 sequences found in this patent (in total)

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Download sequences in fasta format: 17 peptides 30 DNAs

Displaying 1 - 10 of 47 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
2,334
Sequence Type
DNA
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:116284367
      NM_005037
      1 of 20 hits reported for Homo sapiens.
    • Hit length
      1,818 bp
    • E Value
      0E0
    • BLAST Score
      2,664 bits
    • Similarity
      99.86%
    • Coverage
      62.04%
    • Alignment (schematic)

      SEQ ID NO 1
      62.04% cov
      NM_005037
      79.65% cov
    • Alignment Length
      1,448 bp
    • CIGAR string
      886H6M2N1440M mismatches: 2 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123980409
      DQ891108
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,474 bp
    • E Value
      0E0
    • BLAST Score
      2,649.2 bits
    • Similarity
      100%
    • Coverage
      61.44%
    • Alignment (schematic)

      SEQ ID NO 1
      61.44% cov
      DQ891108
      97.29% cov
    • Alignment Length
      1,434 bp
Occurrence
Tools
SEQ ID NO
2
Length
777
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:20336229
      NP_056953
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      995.7 bits
    • Similarity
      96.63%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      NP_056953
      99.01% cov
    • Alignment Length
      504 aa
    • CIGAR string
      273HM5NM8N2M2N4D3N478M mismatches: 18 - insertions: 0 - deletions: 4
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114585446
      XP_001153669
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      993.8 bits
    • Similarity
      96.63%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      XP_001153669
      99.01% cov
    • Alignment Length
      504 aa
    • CIGAR string
      273HM5NM8N2M2N4D3N61MN416M mismatches: 19 - insertions: 0 - deletions: 4
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332231710
      XP_003265037
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      991.9 bits
    • Similarity
      96.63%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      XP_003265037
      99.01% cov
    • Alignment Length
      504 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301771798
      XP_002921313
    • Hit length
      529 aa
    • E Value
      0E0
    • BLAST Score
      989.6 bits
    • Similarity
      96.03%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      XP_002921313
      94.52% cov
    • Alignment Length
      504 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:66864891
      NP_001019803
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      988.4 bits
    • Similarity
      96.03%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      NP_001019803
      99.01% cov
    • Alignment Length
      504 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:74136281
      NP_001028032
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      988 bits
    • Similarity
      96.43%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      NP_001028032
      99.01% cov
    • Alignment Length
      504 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:15723732
      AAL05262
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      987.6 bits
    • Similarity
      96.23%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      AAL05262
      99.01% cov
    • Alignment Length
      504 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296225870
      XP_002758685
    • Hit length
      505 aa
    • E Value
      0E0
    • BLAST Score
      987.6 bits
    • Similarity
      96.43%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 2
      64.86% cov
      XP_002758685
      99.01% cov
    • Alignment Length
      504 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197098440
      NP_001124655
    • Hit length
      477 aa
    • E Value
      0E0
    • BLAST Score
      987.3 bits
    • Similarity
      100%
    • Coverage
      61.39%
    • Alignment (schematic)

      SEQ ID NO 2
      61.39% cov
      NP_001124655
      100% cov
    • Alignment Length
      477 aa
Occurrence
Tools
SEQ ID NO
3
Length
2,523
Sequence Type
DNA
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
4
Length
840
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
Occurrence
Tools
SEQ ID NO
5
Length
2,625
Sequence Type
DNA
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
Occurrence
Tools
SEQ ID NO
6
Length
874
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
Occurrence
Tools
SEQ ID NO
7
Length
42
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
Occurrence
Tools
SEQ ID NO
8
Length
13
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
Occurrence
Tools
SEQ ID NO
9
Length
42
Sequence Type
DNA
Locations
Claims, Detailed Description, Summary
Declared organism
Not specified
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:226061859
      NG_011749
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      153,507 bp
    • E Value
      1.94E-4
    • BLAST Score
      52 bits
    • Similarity
      96.67%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 9
      71.43% cov
      NG_011749
      0.02% cov
    • Alignment Length
      30 bp
    • CIGAR string
      12H4MN25M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
Tools
SEQ ID NO
10
Length
13
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Not specified
Determined organism
Occurrence
Tools

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