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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
12 sequences found in this patent (in total)

Displaying 1 - 10 of 12 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,706
Type
peptide
Locations
Claims, Drawings, Summary

Declared organism:
Bordetella pertussis

Determined organism:
  • Bordetella pertussis 18323

    Bordetella pertussis 18323

    • Public DB hit
      GI:396666
      CAA68613
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,379.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CAA68613
      100% cov
    • Alignment Length
      1,706 aa
    • CIGAR string
      1706M mismatches: 0 - insertions: 0 - deletions: 0
  • Bordetella pertussis Tohama I

    Bordetella pertussis Tohama I

    • Public DB hit
      GI:33591934
      NP_879578
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,378.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_879578
      100% cov
    • Alignment Length
      1,706 aa
    • CIGAR string
      1000MN705M mismatches: 1 - insertions: 0 - deletions: 0
  • Bordetella pertussis CS

    Bordetella pertussis CS

    • Public DB hit
      GI:256427107
      ACU81101
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,372.8 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ACU81101
      100% cov
    • Alignment Length
      1,706 aa
    • CIGAR string
      303MN696MN542MN63MN98M mismatches: 4 - insertions: 0 - deletions: 0
  • Bordetella bronchiseptica RB50

    Bordetella bronchiseptica RB50

    • Public DB hit
      GI:34978374
      Q57506
      1 of 2 hits reported for Bordetella bronchiseptica RB50.
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,125.1 bits
    • Similarity
      98.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      Q57506
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella bronchiseptica

    Bordetella bronchiseptica

    • Public DB hit
      GI:11602643
      CAA85481
    • Hit length
      1,705 aa
    • E Value
      0E0
    • BLAST Score
      3,118.6 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CAA85481
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella parapertussis 12822

    Bordetella parapertussis 12822

    • Public DB hit
      GI:33595034
      NP_882677
    • Hit length
      1,740 aa
    • E Value
      0E0
    • BLAST Score
      3,116.6 bits
    • Similarity
      98.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_882677
      98.05% cov
    • Alignment Length
      1,706 aa
  • Bordetella parapertussis

    Bordetella parapertussis

    • Public DB hit
      GI:7160624
      CAB76450
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,115.5 bits
    • Similarity
      98.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CAB76450
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella pertussis

    Bordetella pertussis

    • Public DB hit
      GI:147883920
      ABQ52218
    • Hit length
      1,225 aa
    • E Value
      0E0
    • BLAST Score
      2,405.9 bits
    • Similarity
      100%
    • Coverage
      71.81%
    • Alignment (schematic)

      SEQ ID NO 1
      71.81% cov
      ABQ52218
      100% cov
    • Alignment Length
      1,225 aa
Occurrence
30 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,706
Type
peptide
Locations
Drawings, Summary

Declared organism:
Artificial

Determined organism:
  • Bordetella pertussis 18323

    Bordetella pertussis 18323

    • Public DB hit
      GI:396666
      CAA68613
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,376.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CAA68613
      100% cov
    • Alignment Length
      1,706 aa
    • CIGAR string
      569MN289MN846M mismatches: 2 - insertions: 0 - deletions: 0
  • Bordetella pertussis Tohama I

    Bordetella pertussis Tohama I

    • Public DB hit
      GI:33591934
      NP_879578
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,375.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_879578
      100% cov
    • Alignment Length
      1,706 aa
    • CIGAR string
      569MN289MN140MN705M mismatches: 3 - insertions: 0 - deletions: 0
  • Bordetella pertussis CS

    Bordetella pertussis CS

    • Public DB hit
      GI:256427107
      ACU81101
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,369.3 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACU81101
      100% cov
    • Alignment Length
      1,706 aa
    • CIGAR string
      303MN265MN289MN140MN542MN63MN98M mismatches: 6 - insertions: 0 - deletions: 0
  • Bordetella bronchiseptica RB50

    Bordetella bronchiseptica RB50

    • Public DB hit
      GI:34978374
      Q57506
      1 of 2 hits reported for Bordetella bronchiseptica RB50.
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,122.8 bits
    • Similarity
      98.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q57506
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella bronchiseptica

    Bordetella bronchiseptica

    • Public DB hit
      GI:11602643
      CAA85481
    • Hit length
      1,705 aa
    • E Value
      0E0
    • BLAST Score
      3,114.7 bits
    • Similarity
      98.18%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CAA85481
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella parapertussis

    Bordetella parapertussis

    • Public DB hit
      GI:7160624
      CAB76450
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,113.9 bits
    • Similarity
      98.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CAB76450
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella parapertussis 12822

    Bordetella parapertussis 12822

    • Public DB hit
      GI:33595034
      NP_882677
    • Hit length
      1,740 aa
    • E Value
      0E0
    • BLAST Score
      3,112.8 bits
    • Similarity
      98.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_882677
      98.05% cov
    • Alignment Length
      1,706 aa
  • Bordetella pertussis

    Bordetella pertussis

    • Public DB hit
      GI:147883920
      ABQ52218
    • Hit length
      1,225 aa
    • E Value
      0E0
    • BLAST Score
      2,402.5 bits
    • Similarity
      100%
    • Coverage
      71.81%
    • Alignment (schematic)

      SEQ ID NO 2
      71.81% cov
      ABQ52218
      100% cov
    • Alignment Length
      1,225 aa
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,708
Type
peptide
Locations
Drawings

Declared organism:
Artificial

Determined organism:
  • Bordetella pertussis 18323

    Bordetella pertussis 18323

    • Public DB hit
      GI:396666
      CAA68613
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,187.9 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CAA68613
      100% cov
    • Alignment Length
      1,708 aa
    • CIGAR string
      188M2D381MN289MN846M mismatches: 2 - insertions: 0 - deletions: 2
  • Bordetella pertussis Tohama I

    Bordetella pertussis Tohama I

    • Public DB hit
      GI:33591934
      NP_879578
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,186.7 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_879578
      100% cov
    • Alignment Length
      1,708 aa
    • CIGAR string
      188M2D381MN289MN140MN705M mismatches: 3 - insertions: 0 - deletions: 2
  • Bordetella pertussis CS

    Bordetella pertussis CS

    • Public DB hit
      GI:256427107
      ACU81101
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,179.8 bits
    • Similarity
      99.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ACU81101
      100% cov
    • Alignment Length
      1,708 aa
    • CIGAR string
      188M2D115MN265MN289MN140MN542MN63MN98M mismatches: 6 - insertions: 0 - deletions: 2
  • Bordetella bronchiseptica RB50

    Bordetella bronchiseptica RB50

    • Public DB hit
      GI:34978374
      Q57506
      1 of 2 hits reported for Bordetella bronchiseptica RB50.
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,115.1 bits
    • Similarity
      98.54%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      Q57506
      100% cov
    • Alignment Length
      1,708 aa
  • Bordetella bronchiseptica

    Bordetella bronchiseptica

    • Public DB hit
      GI:11602643
      CAA85481
    • Hit length
      1,705 aa
    • E Value
      0E0
    • BLAST Score
      3,111.6 bits
    • Similarity
      98.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CAA85481
      100% cov
    • Alignment Length
      1,708 aa
  • Bordetella parapertussis 12822

    Bordetella parapertussis 12822

    • Public DB hit
      GI:33595034
      NP_882677
    • Hit length
      1,740 aa
    • E Value
      0E0
    • BLAST Score
      3,109.3 bits
    • Similarity
      98.42%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NP_882677
      98.05% cov
    • Alignment Length
      1,708 aa
  • Bordetella parapertussis

    Bordetella parapertussis

    • Public DB hit
      GI:7160624
      CAB76450
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,108.9 bits
    • Similarity
      98.42%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CAB76450
      100% cov
    • Alignment Length
      1,708 aa
  • Bordetella pertussis

    Bordetella pertussis

    • Public DB hit
      GI:147883920
      ABQ52218
    • Hit length
      1,225 aa
    • E Value
      0E0
    • BLAST Score
      2,402.5 bits
    • Similarity
      100%
    • Coverage
      71.72%
    • Alignment (schematic)

      SEQ ID NO 3
      71.72% cov
      ABQ52218
      100% cov
    • Alignment Length
      1,225 aa
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
1,720
Type
peptide
Locations
Drawings

Declared organism:
Artificial

Determined organism:
  • Bordetella pertussis 18323

    Bordetella pertussis 18323

    • Public DB hit
      GI:396666
      CAA68613
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,181 bits
    • Similarity
      99.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAA68613
      100% cov
    • Alignment Length
      1,720 aa
    • CIGAR string
      188M2D44M12D337MN289MN846M mismatches: 2 - insertions: 0 - deletions: 14
  • Bordetella pertussis Tohama I

    Bordetella pertussis Tohama I

    • Public DB hit
      GI:33591934
      NP_879578
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,179.8 bits
    • Similarity
      99.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_879578
      100% cov
    • Alignment Length
      1,720 aa
    • CIGAR string
      188M2D44M12D337MN289MN140MN705M mismatches: 3 - insertions: 0 - deletions: 14
  • Bordetella pertussis CS

    Bordetella pertussis CS

    • Public DB hit
      GI:256427107
      ACU81101
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,172.9 bits
    • Similarity
      99.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ACU81101
      100% cov
    • Alignment Length
      1,720 aa
    • CIGAR string
      188M2D44M12D71MN265MN289MN140MN542MN63MN98M mismatches: 6 - insertions: 0 - deletions: 14
  • Bordetella bronchiseptica RB50

    Bordetella bronchiseptica RB50

    • Public DB hit
      GI:34978374
      Q57506
      1 of 2 hits reported for Bordetella bronchiseptica RB50.
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,107 bits
    • Similarity
      97.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q57506
      100% cov
    • Alignment Length
      1,720 aa
  • Bordetella bronchiseptica

    Bordetella bronchiseptica

    • Public DB hit
      GI:11602643
      CAA85481
    • Hit length
      1,705 aa
    • E Value
      0E0
    • BLAST Score
      3,100.5 bits
    • Similarity
      97.38%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAA85481
      100% cov
    • Alignment Length
      1,720 aa
  • Bordetella parapertussis 12822

    Bordetella parapertussis 12822

    • Public DB hit
      GI:33595034
      NP_882677
      1 of 2 hits reported for Bordetella parapertussis 12822.
    • Hit length
      1,740 aa
    • E Value
      0E0
    • BLAST Score
      3,099.3 bits
    • Similarity
      97.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_882677
      98.05% cov
    • Alignment Length
      1,720 aa
  • Bordetella parapertussis

    Bordetella parapertussis

    • Public DB hit
      GI:7160624
      CAB76450
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,099.3 bits
    • Similarity
      97.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAB76450
      100% cov
    • Alignment Length
      1,720 aa
  • Bordetella pertussis

    Bordetella pertussis

    • Public DB hit
      GI:147883920
      ABQ52218
    • Hit length
      1,225 aa
    • E Value
      0E0
    • BLAST Score
      2,402.1 bits
    • Similarity
      100%
    • Coverage
      71.22%
    • Alignment (schematic)

      SEQ ID NO 4
      71.22% cov
      ABQ52218
      100% cov
    • Alignment Length
      1,225 aa
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
8,825
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Bordetella pertussis 18323

    Bordetella pertussis 18323

    • Public DB hit
      GI:396665
      Y00545
    • Hit length
      6,442 bp
    • E Value
      0E0
    • BLAST Score
      9,504 bits
    • Similarity
      99.6%
    • Coverage
      59.09%
    • Alignment (schematic)

      SEQ ID NO 5
      59.09% cov
      Y00545
      80.77% cov
    • Alignment Length
      5,217 bp
    • CIGAR string
      1055H561M4D4M2D129MDMDM4D1008MN2MDMIN15MN2MN849MI3MNMD2619M2555H mismatches: 5 - insertions: 2 - deletions: 14
  • Bordetella pertussis CS

    Bordetella pertussis CS

    • Public DB hit
      GI:332380677
      CP002695
      1 of 2 hits reported for Bordetella pertussis CS.
    • Hit length
      4,124,236 bp
    • E Value
      0E0
    • BLAST Score
      9,492.9 bits
    • Similarity
      99.56%
    • Coverage
      59.09%
    • Alignment (schematic)

      SEQ ID NO 5
      59.09% cov
      CP002695
      0.13% cov
    • Alignment Length
      5,217 bp
    • CIGAR string
      1055H561M4D4M2D129MDMDM4D1008MN2MDMIN15MN2MN849MI3MNMD417MN421MN1779M2555H mismatches: 7 - insertions: 2 - deletions: 14
  • Bordetella pertussis Tohama I

    Bordetella pertussis Tohama I

    • Public DB hit
      GI:33571514
      BX640413
    • Hit length
      349,028 bp
    • E Value
      0E0
    • BLAST Score
      9,492.9 bits
    • Similarity
      99.56%
    • Coverage
      59.09%
    • Alignment (schematic)

      SEQ ID NO 5
      59.09% cov
      BX640413
      1.49% cov
    • Alignment Length
      5,217 bp
    • CIGAR string
      1055H561M4D4M2D129MDMDM4D1008MN2MDMIN15MN2MN849MI3MNMD417MN421MN1779M2555H mismatches: 7 - insertions: 2 - deletions: 14
  • Bordetella hinzii BC-306

    Bordetella hinzii BC-306

    • Public DB hit
      GI:71979944
      DQ102773
    • Hit length
      5,541 bp
    • E Value
      0E0
    • BLAST Score
      9,343.3 bits
    • Similarity
      99.55%
    • Coverage
      58.18%
    • Alignment (schematic)

      SEQ ID NO 5
      58.18% cov
      DQ102773
      92.44% cov
    • Alignment Length
      5,136 bp
  • Bordetella hinzii LMG 13501

    Bordetella hinzii LMG 13501

    • Public DB hit
      GI:66820293
      DQ007078
    • Hit length
      5,541 bp
    • E Value
      0E0
    • BLAST Score
      9,343.3 bits
    • Similarity
      99.55%
    • Coverage
      58.18%
    • Alignment (schematic)

      SEQ ID NO 5
      58.18% cov
      DQ007078
      92.44% cov
    • Alignment Length
      5,136 bp
  • Bordetella bronchiseptica RB50

    Bordetella bronchiseptica RB50

    • Public DB hit
      GI:33575039
      BX640437
    • Hit length
      347,356 bp
    • E Value
      0E0
    • BLAST Score
      8,940.8 bits
    • Similarity
      97.68%
    • Coverage
      59.04%
    • Alignment (schematic)

      SEQ ID NO 5
      59.04% cov
      BX640437
      1.5% cov
    • Alignment Length
      5,217 bp
  • Bordetella parapertussis

    Bordetella parapertussis

    • Public DB hit
      GI:33564799
      BX640423
      1 of 2 hits reported for Bordetella parapertussis.
    • Hit length
      348,251 bp
    • E Value
      0E0
    • BLAST Score
      8,905.7 bits
    • Similarity
      97.57%
    • Coverage
      59.04%
    • Alignment (schematic)

      SEQ ID NO 5
      59.04% cov
      BX640423
      1.49% cov
    • Alignment Length
      5,217 bp
  • Bordetella bronchiseptica

    Bordetella bronchiseptica

    • Public DB hit
      GI:11602642
      Z37112
    • Hit length
      5,334 bp
    • E Value
      0E0
    • BLAST Score
      8,894.6 bits
    • Similarity
      97.53%
    • Coverage
      59.04%
    • Alignment (schematic)

      SEQ ID NO 5
      59.04% cov
      Z37112
      97.41% cov
    • Alignment Length
      5,219 bp
  • Bordetella pertussis

    Bordetella pertussis

    • Public DB hit
      GI:147883919
      EF595960
    • Hit length
      3,678 bp
    • E Value
      0E0
    • BLAST Score
      6,737.7 bits
    • Similarity
      99.73%
    • Coverage
      41.68%
    • Alignment (schematic)

      SEQ ID NO 5
      41.68% cov
      EF595960
      100% cov
    • Alignment Length
      3,680 bp
  • Cloning vector pHANNIBAL

    Cloning vector pHANNIBAL

    • Public DB hit
      GI:15982214
      AJ311872
    • Hit length
      5,824 bp
    • E Value
      0E0
    • BLAST Score
      4,713.8 bits
    • Similarity
      100%
    • Coverage
      28.92%
    • Alignment (schematic)

      SEQ ID NO 5
      28.92% cov
      AJ311872
      43.82% cov
    • Alignment Length
      2,552 bp
  • Cloning vector pT3TS-Tol2

    Cloning vector pT3TS-Tol2

    • Public DB hit
      GI:327176852
      HQ335172
    • Hit length
      5,163 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.96%
    • Alignment (schematic)

      SEQ ID NO 5
      28.96% cov
      HQ335172
      49.27% cov
    • Alignment Length
      2,557 bp
  • Cloning vector pT3TS-Cre

    Cloning vector pT3TS-Cre

    • Public DB hit
      GI:327176849
      HQ335171
    • Hit length
      4,247 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.96%
    • Alignment (schematic)

      SEQ ID NO 5
      28.96% cov
      HQ335171
      59.9% cov
    • Alignment Length
      2,557 bp
  • Cloning vector pgalK-Kn

    Cloning vector pgalK-Kn

    • Public DB hit
      GI:325650937
      FR832405
    • Hit length
      5,080 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.96%
    • Alignment (schematic)

      SEQ ID NO 5
      28.96% cov
      FR832405
      50.08% cov
    • Alignment Length
      2,557 bp
  • Transient expression vector pXGFP-P

    Transient expression vector pXGFP-P

    • Public DB hit
      GI:237652133
      FJ905213
    • Hit length
      4,645 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.96%
    • Alignment (schematic)

      SEQ ID NO 5
      28.96% cov
      FJ905213
      54.77% cov
    • Alignment Length
      2,557 bp
  • Transient expression vector pXGUS-P

    Transient expression vector pXGUS-P

    • Public DB hit
      GI:237652129
      FJ905212
    • Hit length
      5,740 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.96%
    • Alignment (schematic)

      SEQ ID NO 5
      28.96% cov
      FJ905212
      44.32% cov
    • Alignment Length
      2,557 bp
  • Moss transformation vector pPHG-NMyc3

    Moss transformation vector pPHG-NMyc3

    • Public DB hit
      GI:298354381
      AB538233
    • Hit length
      9,849 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      AB538233
      25.8% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPHG-Myc3

    Moss transformation vector pPHG-Myc3

    • Public DB hit
      GI:298354379
      AB538232
    • Hit length
      9,863 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      AB538232
      25.76% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPHG-HA3

    Moss transformation vector pPHG-HA3

    • Public DB hit
      GI:298354377
      AB538231
    • Hit length
      9,842 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      AB538231
      25.82% cov
    • Alignment Length
      2,554 bp
  • Physcomitrella transformation vector pBS108-35SNPT-b

    Physcomitrella transformation vector pBS108-35SNPT-b

    • Public DB hit
      GI:258617571
      GQ463722
    • Hit length
      6,787 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      GQ463722
      37.44% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPIG1HGC

    Moss transformation vector pPIG1HGC

    • Public DB hit
      GI:218156187
      AB472846
    • Hit length
      10,454 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      AB472846
      24.31% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPIG1HCG

    Moss transformation vector pPIG1HCG

    • Public DB hit
      GI:218156185
      AB472845
    • Hit length
      10,452 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      AB472845
      24.31% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPIG1HG

    Moss transformation vector pPIG1HG

    • Public DB hit
      GI:218156184
      AB472844
    • Hit length
      9,735 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      AB472844
      26.1% cov
    • Alignment Length
      2,554 bp
  • Cloning vector pDM193

    Cloning vector pDM193

    • Public DB hit
      GI:198079173
      EU912549
    • Hit length
      3,667 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.93%
    • Alignment (schematic)

      SEQ ID NO 5
      28.93% cov
      EU912549
      69.29% cov
    • Alignment Length
      2,554 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
8,855
Type
nucleotide
Locations
Detailed Description, Drawings

Declared organism:
Artificial

Determined organism:
  • Bordetella pertussis 18323

    Bordetella pertussis 18323

    • Public DB hit
      GI:396665
      Y00545
    • Hit length
      6,442 bp
    • E Value
      0E0
    • BLAST Score
      8,274.1 bits
    • Similarity
      99.8%
    • Coverage
      50.9%
    • Alignment (schematic)

      SEQ ID NO 6
      50.9% cov
      Y00545
      69.96% cov
    • Alignment Length
      4,509 bp
    • CIGAR string
      1793H1008MN2MDMIN15MN2MN849MI3MNMD2619M2555H mismatches: 5 - insertions: 2 - deletions: 2
  • Bordetella pertussis CS

    Bordetella pertussis CS

    • Public DB hit
      GI:332380677
      CP002695
      1 of 2 hits reported for Bordetella pertussis CS.
    • Hit length
      4,124,236 bp
    • E Value
      0E0
    • BLAST Score
      8,263 bits
    • Similarity
      99.76%
    • Coverage
      50.9%
    • Alignment (schematic)

      SEQ ID NO 6
      50.9% cov
      CP002695
      0.11% cov
    • Alignment Length
      4,509 bp
    • CIGAR string
      1793H1008MN2MDMIN15MN2MN849MI3MNMD417MN421MN1779M2555H mismatches: 7 - insertions: 2 - deletions: 2
  • Bordetella pertussis Tohama I

    Bordetella pertussis Tohama I

    • Public DB hit
      GI:33571514
      BX640413
    • Hit length
      349,028 bp
    • E Value
      0E0
    • BLAST Score
      8,263 bits
    • Similarity
      99.76%
    • Coverage
      50.9%
    • Alignment (schematic)

      SEQ ID NO 6
      50.9% cov
      BX640413
      1.29% cov
    • Alignment Length
      4,509 bp
    • CIGAR string
      1793H1008MN2MDMIN15MN2MN849MI3MNMD417MN421MN1779M2555H mismatches: 7 - insertions: 2 - deletions: 2
  • Bordetella hinzii BC-306

    Bordetella hinzii BC-306

    • Public DB hit
      GI:71979944
      DQ102773
    • Hit length
      5,541 bp
    • E Value
      0E0
    • BLAST Score
      8,113.5 bits
    • Similarity
      99.75%
    • Coverage
      49.98%
    • Alignment (schematic)

      SEQ ID NO 6
      49.98% cov
      DQ102773
      79.88% cov
    • Alignment Length
      4,428 bp
  • Bordetella hinzii LMG 13501

    Bordetella hinzii LMG 13501

    • Public DB hit
      GI:66820293
      DQ007078
    • Hit length
      5,541 bp
    • E Value
      0E0
    • BLAST Score
      8,113.5 bits
    • Similarity
      99.75%
    • Coverage
      49.98%
    • Alignment (schematic)

      SEQ ID NO 6
      49.98% cov
      DQ007078
      79.88% cov
    • Alignment Length
      4,428 bp
  • Bordetella bronchiseptica RB50

    Bordetella bronchiseptica RB50

    • Public DB hit
      GI:33575039
      BX640437
    • Hit length
      347,356 bp
    • E Value
      0E0
    • BLAST Score
      7,716.4 bits
    • Similarity
      97.6%
    • Coverage
      50.84%
    • Alignment (schematic)

      SEQ ID NO 6
      50.84% cov
      BX640437
      1.3% cov
    • Alignment Length
      4,509 bp
  • Bordetella parapertussis

    Bordetella parapertussis

    • Public DB hit
      GI:33564799
      BX640423
      1 of 2 hits reported for Bordetella parapertussis.
    • Hit length
      348,251 bp
    • E Value
      0E0
    • BLAST Score
      7,681.3 bits
    • Similarity
      97.47%
    • Coverage
      50.84%
    • Alignment (schematic)

      SEQ ID NO 6
      50.84% cov
      BX640423
      1.29% cov
    • Alignment Length
      4,509 bp
  • Bordetella bronchiseptica

    Bordetella bronchiseptica

    • Public DB hit
      GI:11602642
      Z37112
    • Hit length
      5,334 bp
    • E Value
      0E0
    • BLAST Score
      7,670.3 bits
    • Similarity
      97.43%
    • Coverage
      50.84%
    • Alignment (schematic)

      SEQ ID NO 6
      50.84% cov
      Z37112
      84.36% cov
    • Alignment Length
      4,511 bp
  • Bordetella pertussis

    Bordetella pertussis

    • Public DB hit
      GI:147883919
      EF595960
    • Hit length
      3,678 bp
    • E Value
      0E0
    • BLAST Score
      6,737.7 bits
    • Similarity
      99.73%
    • Coverage
      41.54%
    • Alignment (schematic)

      SEQ ID NO 6
      41.54% cov
      EF595960
      100% cov
    • Alignment Length
      3,680 bp
  • Cloning vector pHANNIBAL

    Cloning vector pHANNIBAL

    • Public DB hit
      GI:15982214
      AJ311872
    • Hit length
      5,824 bp
    • E Value
      0E0
    • BLAST Score
      4,713.8 bits
    • Similarity
      100%
    • Coverage
      28.82%
    • Alignment (schematic)

      SEQ ID NO 6
      28.82% cov
      AJ311872
      43.82% cov
    • Alignment Length
      2,552 bp
  • Cloning vector pT3TS-Tol2

    Cloning vector pT3TS-Tol2

    • Public DB hit
      GI:327176852
      HQ335172
    • Hit length
      5,163 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.87%
    • Alignment (schematic)

      SEQ ID NO 6
      28.87% cov
      HQ335172
      49.27% cov
    • Alignment Length
      2,557 bp
  • Cloning vector pT3TS-Cre

    Cloning vector pT3TS-Cre

    • Public DB hit
      GI:327176849
      HQ335171
    • Hit length
      4,247 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.87%
    • Alignment (schematic)

      SEQ ID NO 6
      28.87% cov
      HQ335171
      59.9% cov
    • Alignment Length
      2,557 bp
  • Cloning vector pgalK-Kn

    Cloning vector pgalK-Kn

    • Public DB hit
      GI:325650937
      FR832405
    • Hit length
      5,080 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.87%
    • Alignment (schematic)

      SEQ ID NO 6
      28.87% cov
      FR832405
      50.08% cov
    • Alignment Length
      2,557 bp
  • Transient expression vector pXGFP-P

    Transient expression vector pXGFP-P

    • Public DB hit
      GI:237652133
      FJ905213
    • Hit length
      4,645 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.87%
    • Alignment (schematic)

      SEQ ID NO 6
      28.87% cov
      FJ905213
      54.77% cov
    • Alignment Length
      2,557 bp
  • Transient expression vector pXGUS-P

    Transient expression vector pXGUS-P

    • Public DB hit
      GI:237652129
      FJ905212
    • Hit length
      5,740 bp
    • E Value
      0E0
    • BLAST Score
      4,627 bits
    • Similarity
      99.41%
    • Coverage
      28.87%
    • Alignment (schematic)

      SEQ ID NO 6
      28.87% cov
      FJ905212
      44.32% cov
    • Alignment Length
      2,557 bp
  • Moss transformation vector pPHG-NMyc3

    Moss transformation vector pPHG-NMyc3

    • Public DB hit
      GI:298354381
      AB538233
    • Hit length
      9,849 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      AB538233
      25.8% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPHG-Myc3

    Moss transformation vector pPHG-Myc3

    • Public DB hit
      GI:298354379
      AB538232
    • Hit length
      9,863 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      AB538232
      25.76% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPHG-HA3

    Moss transformation vector pPHG-HA3

    • Public DB hit
      GI:298354377
      AB538231
    • Hit length
      9,842 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      AB538231
      25.82% cov
    • Alignment Length
      2,554 bp
  • Physcomitrella transformation vector pBS108-35SNPT-b

    Physcomitrella transformation vector pBS108-35SNPT-b

    • Public DB hit
      GI:258617571
      GQ463722
    • Hit length
      6,787 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      GQ463722
      37.44% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPIG1HGC

    Moss transformation vector pPIG1HGC

    • Public DB hit
      GI:218156187
      AB472846
    • Hit length
      10,454 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      AB472846
      24.31% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPIG1HCG

    Moss transformation vector pPIG1HCG

    • Public DB hit
      GI:218156185
      AB472845
    • Hit length
      10,452 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      AB472845
      24.31% cov
    • Alignment Length
      2,554 bp
  • Moss transformation vector pPIG1HG

    Moss transformation vector pPIG1HG

    • Public DB hit
      GI:218156184
      AB472844
    • Hit length
      9,735 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      AB472844
      26.1% cov
    • Alignment Length
      2,554 bp
  • Cloning vector pDM193

    Cloning vector pDM193

    • Public DB hit
      GI:198079173
      EU912549
    • Hit length
      3,667 bp
    • E Value
      0E0
    • BLAST Score
      4,621.4 bits
    • Similarity
      99.41%
    • Coverage
      28.83%
    • Alignment (schematic)

      SEQ ID NO 6
      28.83% cov
      EU912549
      69.29% cov
    • Alignment Length
      2,554 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
20
Type
nucleotide
Locations
Summary

Declared organism:
Artificial

Determined organism:
  • Syntelopodeuma sp. YSL-2003

    Syntelopodeuma sp. YSL-2003

    • Public DB hit
      GI:40548514
      AY421744
    • Hit length
      984 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AY421744
      2.03% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
839 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
20
Type
nucleotide
Locations
Summary

Declared organism:
Artificial

Determined organism:
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:297728906
      NM_001189888
      1 of 3 hits reported for Oryza sativa Japonica Group.
    • Hit length
      3,963 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001189888
      0.5% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Expression vector pMCG50-S

    Expression vector pMCG50-S

    • Public DB hit
      GI:3746487
      AF053409
    • Hit length
      4,625 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF053409
      0.43% cov
    • Alignment Length
      20 bp
  • Expression vector pMCG16-S

    Expression vector pMCG16-S

    • Public DB hit
      GI:3746485
      AF053408
    • Hit length
      4,227 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF053408
      0.47% cov
    • Alignment Length
      20 bp
Occurrence
4216 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
8
Type
peptide
Locations
Detailed Description, Drawings, Summary

Declared organism:
Unspecified

Determined organism:
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:160285976
      2QRT_A
      1 of 3 hits reported for Mus musculus.
    • Hit length
      422 aa
    • E Value
      9.59E1
    • BLAST Score
      29.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      2QRT_A
      1.9% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Drosophila eremophila

    Drosophila eremophila

    • Public DB hit
      GI:193503633
      ACF18605
    • Hit length
      492 aa
    • E Value
      2.74E3
    • BLAST Score
      24.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ACF18605
      1.63% cov
    • Alignment Length
      8 aa
Occurrence
3601 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
1,740
Type
peptide
Locations
Claims, Summary

Declared organism:
Bordetella parapertussis

Determined organism:
  • Bordetella parapertussis 12822

    Bordetella parapertussis 12822

    • Public DB hit
      GI:33595034
      NP_882677
    • Hit length
      1,740 aa
    • E Value
      0E0
    • BLAST Score
      3,456.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_882677
      100% cov
    • Alignment Length
      1,740 aa
    • CIGAR string
      1740M mismatches: 0 - insertions: 0 - deletions: 0
  • Bordetella bronchiseptica RB50

    Bordetella bronchiseptica RB50

    • Public DB hit
      GI:33599313
      NP_886873
      1 of 2 hits reported for Bordetella bronchiseptica RB50.
    • Hit length
      1,740 aa
    • E Value
      0E0
    • BLAST Score
      3,451.8 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_886873
      100% cov
    • Alignment Length
      1,740 aa
    • CIGAR string
      600MN681MN191MN265M mismatches: 3 - insertions: 0 - deletions: 0
  • Bordetella parapertussis

    Bordetella parapertussis

    • Public DB hit
      GI:7160624
      CAB76450
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,381.3 bits
    • Similarity
      100%
    • Coverage
      98.05%
    • Alignment (schematic)

      SEQ ID NO 10
      98.05% cov
      CAB76450
      100% cov
    • Alignment Length
      1,706 aa
    • CIGAR string
      34H1706M mismatches: 0 - insertions: 0 - deletions: 0
  • Bordetella bronchiseptica

    Bordetella bronchiseptica

    • Public DB hit
      GI:11602643
      CAA85481
    • Hit length
      1,705 aa
    • E Value
      0E0
    • BLAST Score
      3,181.7 bits
    • Similarity
      99.41%
    • Coverage
      98.05%
    • Alignment (schematic)

      SEQ ID NO 10
      98.05% cov
      CAA85481
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella pertussis Tohama I

    Bordetella pertussis Tohama I

    • Public DB hit
      GI:33591934
      NP_879578
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,117 bits
    • Similarity
      98.53%
    • Coverage
      98.05%
    • Alignment (schematic)

      SEQ ID NO 10
      98.05% cov
      NP_879578
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella pertussis 18323

    Bordetella pertussis 18323

    • Public DB hit
      GI:396666
      CAA68613
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,114.3 bits
    • Similarity
      98.53%
    • Coverage
      98.05%
    • Alignment (schematic)

      SEQ ID NO 10
      98.05% cov
      CAA68613
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella pertussis CS

    Bordetella pertussis CS

    • Public DB hit
      GI:256427107
      ACU81101
    • Hit length
      1,706 aa
    • E Value
      0E0
    • BLAST Score
      3,111.6 bits
    • Similarity
      98.42%
    • Coverage
      98.05%
    • Alignment (schematic)

      SEQ ID NO 10
      98.05% cov
      ACU81101
      100% cov
    • Alignment Length
      1,706 aa
  • Bordetella pertussis

    Bordetella pertussis

    • Public DB hit
      GI:147883920
      ABQ52218
    • Hit length
      1,225 aa
    • E Value
      0E0
    • BLAST Score
      2,176 bits
    • Similarity
      98.12%
    • Coverage
      70.4%
    • Alignment (schematic)

      SEQ ID NO 10
      70.4% cov
      ABQ52218
      100% cov
    • Alignment Length
      1,225 aa
Occurrence
18 times in PatSeqDB
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