Patents
US 7709225 B2

Nucleic Acids Encoding Mutations In Sodium Channels Related To Epilepsy

  • Published: May 4, 2010
  • Earliest Priority: Jul 18 2001
  • Family: 2
  • Cited Works: 31
  • Cited by: 6
  • Cites: 6
  • Sequences: 179
  • Additional Info: Cited Works Full text
Granted Patent
US 7709225 B2
062-467-727-911-015
Data obtained from: DDBJ Pat USPTO PSIPS NCBI GenBank EMBL-EBI Pat
179 sequences found in this patent (in total)

Filter sequences

Clear
Download sequences in fasta format: 37 peptides 142 DNAs

Displaying 1 - 10 of 179 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
8,381
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:320461721
      NM_001202435
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      8,342 bp
    • E Value
      0E0
    • BLAST Score
      15,034.7 bits
    • Similarity
      99.9%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 1
      97.43% cov
      NM_001202435
      97.88% cov
    • Alignment Length
      8,166 bp
    • CIGAR string
      215H336M2N275MN2635MN1163MN2592MN2MD810MN345M mismatches: 7 - insertions: 0 - deletions: 1
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814608
      XM_003309282
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,827.9 bits
    • Similarity
      99.44%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 1
      97.43% cov
      XM_003309282
      94.93% cov
    • Alignment Length
      8,170 bp
    • CIGAR string
      215H336M2N275MN114MN35MN497MN65MN65MN305MN191MN209MN239MN110MN278MN659MN137MN7MN33MN8MN65MN765MN358MN26MN257MN29MN113MN113MN269MN413MN248MN80MN139MN331MN50MN46M4I82MN24MN2MD432MN26MN5MD214MN237MN237M mismatches: 40 - insertions: 4 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668754
      XM_002812545
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      8,416 bp
    • E Value
      0E0
    • BLAST Score
      14,586 bits
    • Similarity
      99.03%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 1
      97.04% cov
      XM_002812545
      96.68% cov
    • Alignment Length
      8,138 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234085
      XM_003266191
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,539.8 bits
    • Similarity
      98.81%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 1
      97.43% cov
      XM_003266191
      94.86% cov
    • Alignment Length
      8,168 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264199
      XM_001101023
    • Hit length
      8,223 bp
    • E Value
      0E0
    • BLAST Score
      14,229.6 bits
    • Similarity
      98.26%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 1
      97.04% cov
      XM_001101023
      98.86% cov
    • Alignment Length
      8,141 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204647
      XM_002749372
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      8,136 bp
    • E Value
      0E0
    • BLAST Score
      13,437.3 bits
    • Similarity
      96.49%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 1
      97.04% cov
      XM_002749372
      100% cov
    • Alignment Length
      8,150 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
2
Length
2,009
Sequence Type
peptide
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:23978418
      BAC21101
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,149.4 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      BAC21101
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN91MN1266MN554M mismatches: 3 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814609
      XP_003309330
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,147.8 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003309330
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN91MN974MN291MN554M mismatches: 4 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234086
      XP_003266239
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,146.3 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003266239
      100% cov
    • Alignment Length
      2,009 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668755
      XP_002812591
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,139.7 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002812591
      100% cov
    • Alignment Length
      2,009 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204648
      XP_002749418
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,130.1 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002749418
      100% cov
    • Alignment Length
      2,009 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:74004474
      XP_535941
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,108.5 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_535941
      100% cov
    • Alignment Length
      2,009 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291391665
      XP_002712295
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,108.1 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002712295
      100% cov
    • Alignment Length
      2,009 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:123857421
      CAM17351
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,102.4 bits
    • Similarity
      99.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CAM17351
      100% cov
    • Alignment Length
      2,009 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:119887596
      XP_001252668
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,098.5 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001252668
      100% cov
    • Alignment Length
      2,009 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:13540709
      NP_110502
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,095.8 bits
    • Similarity
      99.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_110502
      100% cov
    • Alignment Length
      2,009 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109099924
      XP_001101023
    • Hit length
      2,008 aa
    • E Value
      0E0
    • BLAST Score
      3,967.2 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001101023
      100% cov
    • Alignment Length
      2,009 aa
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
3
Length
8,381
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:320461721
      NM_001202435
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      8,342 bp
    • E Value
      0E0
    • BLAST Score
      15,034.7 bits
    • Similarity
      99.9%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 3
      97.43% cov
      NM_001202435
      97.88% cov
    • Alignment Length
      8,166 bp
    • CIGAR string
      215H336M2N2911MN857MN305MN2592MN2MD810MN345M mismatches: 7 - insertions: 0 - deletions: 1
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814608
      XM_003309282
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,827.9 bits
    • Similarity
      99.44%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 3
      97.43% cov
      XM_003309282
      94.93% cov
    • Alignment Length
      8,170 bp
    • CIGAR string
      215H336M2N390MN35MN497MN65MN65MN305MN191MN209MN239MN110MN278MN659MN137MN7MN33MN8MN65MN459MN305MN358MN26MN257MN29MN113MN113MN269MN413MN248MN80MN139MN331MN50MN46M4I82MN24MN2MD432MN26MN5MD214MN237MN237M mismatches: 40 - insertions: 4 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668754
      XM_002812545
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      8,416 bp
    • E Value
      0E0
    • BLAST Score
      14,586 bits
    • Similarity
      99.03%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 3
      97.04% cov
      XM_002812545
      96.68% cov
    • Alignment Length
      8,138 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234085
      XM_003266191
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,539.8 bits
    • Similarity
      98.81%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 3
      97.43% cov
      XM_003266191
      94.86% cov
    • Alignment Length
      8,168 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264199
      XM_001101023
    • Hit length
      8,223 bp
    • E Value
      0E0
    • BLAST Score
      14,229.6 bits
    • Similarity
      98.26%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 3
      97.04% cov
      XM_001101023
      98.86% cov
    • Alignment Length
      8,141 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204647
      XM_002749372
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      8,136 bp
    • E Value
      0E0
    • BLAST Score
      13,437.3 bits
    • Similarity
      96.49%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 3
      97.04% cov
      XM_002749372
      100% cov
    • Alignment Length
      8,150 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
4
Length
2,009
Sequence Type
peptide
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:23978418
      BAC21101
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,150.5 bits
    • Similarity
      99.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      BAC21101
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN1256MN101MN554M mismatches: 3 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814609
      XP_003309330
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,149 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003309330
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN1066MN189MN101MN554M mismatches: 4 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234086
      XP_003266239
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,147.4 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003266239
      100% cov
    • Alignment Length
      2,009 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668755
      XP_002812591
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,142 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002812591
      100% cov
    • Alignment Length
      2,009 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204648
      XP_002749418
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,132.8 bits
    • Similarity
      99.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002749418
      100% cov
    • Alignment Length
      2,009 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291391665
      XP_002712295
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,112 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002712295
      100% cov
    • Alignment Length
      2,009 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:74004474
      XP_535941
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,110.1 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_535941
      100% cov
    • Alignment Length
      2,009 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:123857421
      CAM17351
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,103.5 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAM17351
      100% cov
    • Alignment Length
      2,009 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:119887596
      XP_001252668
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,100.1 bits
    • Similarity
      99.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001252668
      100% cov
    • Alignment Length
      2,009 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:13540709
      NP_110502
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,097 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_110502
      100% cov
    • Alignment Length
      2,009 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109099924
      XP_001101023
    • Hit length
      2,008 aa
    • E Value
      0E0
    • BLAST Score
      3,969.5 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001101023
      100% cov
    • Alignment Length
      2,009 aa
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
5
Length
8,381
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:320461721
      NM_001202435
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      8,342 bp
    • E Value
      0E0
    • BLAST Score
      15,034.7 bits
    • Similarity
      99.9%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 5
      97.43% cov
      NM_001202435
      97.88% cov
    • Alignment Length
      8,166 bp
    • CIGAR string
      215H336M2N2911MN1163MN604MN1987MN2MD810MN345M mismatches: 7 - insertions: 0 - deletions: 1
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814608
      XM_003309282
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,827.9 bits
    • Similarity
      99.44%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 5
      97.43% cov
      XM_003309282
      94.93% cov
    • Alignment Length
      8,170 bp
    • CIGAR string
      215H336M2N390MN35MN497MN65MN65MN305MN191MN209MN239MN110MN278MN659MN137MN7MN33MN8MN65MN765MN358MN26MN218MN38MN29MN113MN113MN269MN413MN248MN80MN139MN331MN50MN46M4I82MN24MN2MD432MN26MN5MD214MN237MN237M mismatches: 40 - insertions: 4 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668754
      XM_002812545
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      8,416 bp
    • E Value
      0E0
    • BLAST Score
      14,586 bits
    • Similarity
      99.03%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 5
      97.04% cov
      XM_002812545
      96.68% cov
    • Alignment Length
      8,138 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234085
      XM_003266191
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,539.8 bits
    • Similarity
      98.81%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 5
      97.43% cov
      XM_003266191
      94.86% cov
    • Alignment Length
      8,168 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264199
      XM_001101023
    • Hit length
      8,223 bp
    • E Value
      0E0
    • BLAST Score
      14,229.6 bits
    • Similarity
      98.26%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 5
      97.04% cov
      XM_001101023
      98.86% cov
    • Alignment Length
      8,141 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204647
      XM_002749372
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      8,136 bp
    • E Value
      0E0
    • BLAST Score
      13,437.3 bits
    • Similarity
      96.49%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 5
      97.04% cov
      XM_002749372
      100% cov
    • Alignment Length
      8,150 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
6
Length
2,009
Sequence Type
peptide
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:23978418
      BAC21101
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,152.4 bits
    • Similarity
      99.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      BAC21101
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN1358MN200MN353M mismatches: 3 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814609
      XP_003309330
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,150.9 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003309330
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN1066MN291MN200MN353M mismatches: 4 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234086
      XP_003266239
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,149.4 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003266239
      100% cov
    • Alignment Length
      2,009 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668755
      XP_002812591
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,144 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002812591
      100% cov
    • Alignment Length
      2,009 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204648
      XP_002749418
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,132 bits
    • Similarity
      99.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002749418
      100% cov
    • Alignment Length
      2,009 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291391665
      XP_002712295
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,112 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002712295
      100% cov
    • Alignment Length
      2,009 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:74004474
      XP_535941
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,111.6 bits
    • Similarity
      99.4%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_535941
      100% cov
    • Alignment Length
      2,009 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:123857421
      CAM17351
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,103.5 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CAM17351
      100% cov
    • Alignment Length
      2,009 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:119887596
      XP_001252668
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,099.7 bits
    • Similarity
      99.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001252668
      100% cov
    • Alignment Length
      2,009 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:13540709
      NP_110502
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,097 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_110502
      100% cov
    • Alignment Length
      2,009 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109099924
      XP_001101023
    • Hit length
      2,008 aa
    • E Value
      0E0
    • BLAST Score
      3,967.5 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001101023
      100% cov
    • Alignment Length
      2,009 aa
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
7
Length
8,381
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:320461721
      NM_001202435
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      8,342 bp
    • E Value
      0E0
    • BLAST Score
      15,034.7 bits
    • Similarity
      99.9%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 7
      97.43% cov
      NM_001202435
      97.88% cov
    • Alignment Length
      8,166 bp
    • CIGAR string
      215H336M2N2234MN676MN1163MN2592MN2MD810MN345M mismatches: 7 - insertions: 0 - deletions: 1
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814608
      XM_003309282
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,827.9 bits
    • Similarity
      99.44%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 7
      97.43% cov
      XM_003309282
      94.93% cov
    • Alignment Length
      8,170 bp
    • CIGAR string
      215H336M2N390MN35MN497MN65MN65MN305MN191MN209MN239MN110MN118MN159MN659MN137MN7MN33MN8MN65MN765MN358MN26MN257MN29MN113MN113MN269MN413MN248MN80MN139MN331MN50MN46M4I82MN24MN2MD432MN26MN5MD214MN237MN237M mismatches: 40 - insertions: 4 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668754
      XM_002812545
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      8,416 bp
    • E Value
      0E0
    • BLAST Score
      14,586 bits
    • Similarity
      99.03%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 7
      97.04% cov
      XM_002812545
      96.68% cov
    • Alignment Length
      8,138 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234085
      XM_003266191
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,539.8 bits
    • Similarity
      98.81%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 7
      97.43% cov
      XM_003266191
      94.86% cov
    • Alignment Length
      8,168 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264199
      XM_001101023
    • Hit length
      8,223 bp
    • E Value
      0E0
    • BLAST Score
      14,229.6 bits
    • Similarity
      98.26%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 7
      97.04% cov
      XM_001101023
      98.86% cov
    • Alignment Length
      8,141 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204647
      XM_002749372
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      8,136 bp
    • E Value
      0E0
    • BLAST Score
      13,437.3 bits
    • Similarity
      96.49%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 7
      97.04% cov
      XM_002749372
      100% cov
    • Alignment Length
      8,150 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
8
Length
8,381
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:320461721
      NM_001202435
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      8,342 bp
    • E Value
      0E0
    • BLAST Score
      15,034.7 bits
    • Similarity
      99.9%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 8
      97.43% cov
      NM_001202435
      97.88% cov
    • Alignment Length
      8,166 bp
    • CIGAR string
      215H336M2N2601MN309MN1163MN2592MN2MD810MN345M mismatches: 7 - insertions: 0 - deletions: 1
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814608
      XM_003309282
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,827.9 bits
    • Similarity
      99.44%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 8
      97.43% cov
      XM_003309282
      94.93% cov
    • Alignment Length
      8,170 bp
    • CIGAR string
      215H336M2N390MN35MN497MN65MN65MN305MN191MN209MN239MN110MN278MN206MN452MN137MN7MN33MN8MN65MN765MN358MN26MN257MN29MN113MN113MN269MN413MN248MN80MN139MN331MN50MN46M4I82MN24MN2MD432MN26MN5MD214MN237MN237M mismatches: 40 - insertions: 4 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668754
      XM_002812545
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      8,416 bp
    • E Value
      0E0
    • BLAST Score
      14,586 bits
    • Similarity
      99.03%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 8
      97.04% cov
      XM_002812545
      96.68% cov
    • Alignment Length
      8,138 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234085
      XM_003266191
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,539.8 bits
    • Similarity
      98.81%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 8
      97.43% cov
      XM_003266191
      94.86% cov
    • Alignment Length
      8,168 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264199
      XM_001101023
    • Hit length
      8,223 bp
    • E Value
      0E0
    • BLAST Score
      14,229.6 bits
    • Similarity
      98.26%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 8
      97.04% cov
      XM_001101023
      98.86% cov
    • Alignment Length
      8,141 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204647
      XM_002749372
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      8,136 bp
    • E Value
      0E0
    • BLAST Score
      13,437.3 bits
    • Similarity
      96.49%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 8
      97.04% cov
      XM_002749372
      100% cov
    • Alignment Length
      8,150 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
9
Length
8,381
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:320461721
      NM_001202435
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      8,342 bp
    • E Value
      0E0
    • BLAST Score
      15,045.8 bits
    • Similarity
      99.93%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 9
      97.43% cov
      NM_001202435
      97.88% cov
    • Alignment Length
      8,166 bp
    • CIGAR string
      215H336M2N4075MN2592MN2MD810MN345M mismatches: 5 - insertions: 0 - deletions: 1
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814608
      XM_003309282
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,827.9 bits
    • Similarity
      99.44%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 9
      97.43% cov
      XM_003309282
      94.93% cov
    • Alignment Length
      8,170 bp
    • CIGAR string
      215H336M2N390MN35MN497MN65MN65MN305MN191MN209MN239MN110MN278MN516MN142MN137MN7MN33MN8MN65MN765MN358MN26MN257MN29MN113MN113MN269MN413MN248MN80MN139MN331MN50MN46M4I82MN24MN2MD432MN26MN5MD214MN237MN237M mismatches: 40 - insertions: 4 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668754
      XM_002812545
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      8,416 bp
    • E Value
      0E0
    • BLAST Score
      14,586 bits
    • Similarity
      99.03%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 9
      97.04% cov
      XM_002812545
      96.68% cov
    • Alignment Length
      8,138 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234085
      XM_003266191
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      8,604 bp
    • E Value
      0E0
    • BLAST Score
      14,539.8 bits
    • Similarity
      98.81%
    • Coverage
      97.43%
    • Alignment (schematic)

      SEQ ID NO 9
      97.43% cov
      XM_003266191
      94.86% cov
    • Alignment Length
      8,168 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297264199
      XM_001101023
    • Hit length
      8,223 bp
    • E Value
      0E0
    • BLAST Score
      14,229.6 bits
    • Similarity
      98.26%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 9
      97.04% cov
      XM_001101023
      98.86% cov
    • Alignment Length
      8,141 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204647
      XM_002749372
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      8,136 bp
    • E Value
      0E0
    • BLAST Score
      13,437.3 bits
    • Similarity
      96.49%
    • Coverage
      97.04%
    • Alignment (schematic)

      SEQ ID NO 9
      97.04% cov
      XM_002749372
      100% cov
    • Alignment Length
      8,150 bp
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
10
Length
2,009
Sequence Type
peptide
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:260166633
      NP_001159435
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,151.7 bits
    • Similarity
      99.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_001159435
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN1358MN554M mismatches: 2 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332814609
      XP_003309330
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,148.2 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003309330
      100% cov
    • Alignment Length
      2,009 aa
    • CIGAR string
      95MN970MN95MN291MN554M mismatches: 4 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332234086
      XP_003266239
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,147 bits
    • Similarity
      99.8%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_003266239
      100% cov
    • Alignment Length
      2,009 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297668755
      XP_002812591
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,141.7 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002812591
      100% cov
    • Alignment Length
      2,009 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204648
      XP_002749418
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,134.3 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002749418
      100% cov
    • Alignment Length
      2,009 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291391665
      XP_002712295
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,115.1 bits
    • Similarity
      99.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002712295
      100% cov
    • Alignment Length
      2,009 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:74004474
      XP_535941
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,109.3 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_535941
      100% cov
    • Alignment Length
      2,009 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:123857421
      CAM17351
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,102.7 bits
    • Similarity
      99.5%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CAM17351
      100% cov
    • Alignment Length
      2,009 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:119887596
      XP_001252668
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,099.3 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001252668
      100% cov
    • Alignment Length
      2,009 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:13540709
      NP_110502
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      2,009 aa
    • E Value
      0E0
    • BLAST Score
      4,096.6 bits
    • Similarity
      99.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_110502
      100% cov
    • Alignment Length
      2,009 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109099924
      XP_001101023
    • Hit length
      2,008 aa
    • E Value
      0E0
    • BLAST Score
      3,967.9 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001101023
      100% cov
    • Alignment Length
      2,009 aa
Occurrence
13 times in PatSeqDB
Tools

Download Citation


Sign in to the Lens

Forgot Password? Register New Account
Feedback