Patents
US 2004/0219170 A1

Viruses Encoding Mutant Membrane Protein

  • Published: Nov 4, 2004
  • Earliest Priority: Apr 23 2003
  • Family: 21
  • Cited Works: 0
  • Cited by: 18
  • Cites: 7
  • Sequences: 29
  • Additional Info: Full text
Patent Application
US 2004/0219170 A1
062-423-064-966-730
Data obtained from: USPTO Fulltext
29 sequences found in this patent (in total)

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Displaying 1 - 10 of 29 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
2,396
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Influenza virus B/Lee/40
Determined organism
  • Influenza B virus (B/Hong Kong/8/1973)

    Influenza B virus (B/Hong Kong/8/1973)

    • Public DB hit
      GI:126361875
      EF456778
    • Hit length
      2,375 bp
    • E Value
      0E0
    • BLAST Score
      4,370.3 bits
    • Similarity
      99.87%
    • Coverage
      99.12%
    • Alignment (schematic)

      SEQ ID NO 1
      99.12% cov
      EF456778
      100% cov
    • Alignment Length
      2,375 bp
    • CIGAR string
      1H2350MN11MN3MN8M20H mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Lee/40)

    Influenza B virus (B/Lee/40)

    • Public DB hit
      GI:110676598
      DQ792894
      1 of 3 hits reported for Influenza B virus (B/Lee/40).
    • Hit length
      2,368 bp
    • E Value
      0E0
    • BLAST Score
      4,302 bits
    • Similarity
      99.45%
    • Coverage
      98.83%
    • Alignment (schematic)

      SEQ ID NO 1
      98.83% cov
      DQ792894
      100% cov
    • Alignment Length
      2,368 bp
    • CIGAR string
      10H24MN128MN116MN491MN41MN98MN15MN103MN142MN75MN653MN140MN92MN237M18H mismatches: 13 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-17(Lee/1940-Malaysia/2506/2004))

    Influenza B virus (B/NYMC BX-17(Lee/1940-Malaysia/2506/2004))

    • Public DB hit
      GI:194351729
      CY033875
    • Hit length
      2,351 bp
    • E Value
      0E0
    • BLAST Score
      4,270.6 bits
    • Similarity
      99.45%
    • Coverage
      98.12%
    • Alignment (schematic)

      SEQ ID NO 1
      98.12% cov
      CY033875
      100% cov
    • Alignment Length
      2,351 bp
    • CIGAR string
      22H12MN128MN116MN491MN41MN98MN15MN103MN142MN75MN653MN140MN92MN232M23H mismatches: 13 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    • Public DB hit
      GI:194351615
      CY033827
    • Hit length
      2,348 bp
    • E Value
      0E0
    • BLAST Score
      4,265 bits
    • Similarity
      99.45%
    • Coverage
      98%
    • Alignment (schematic)

      SEQ ID NO 1
      98% cov
      CY033827
      100% cov
    • Alignment Length
      2,348 bp
    • CIGAR string
      22H12MN128MN116MN491MN41MN98MN15MN103MN142MN75MN653MN140MN92MN229M26H mismatches: 13 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Hong Kong/05/1972)

    Influenza B virus (B/Hong Kong/05/1972)

    • Public DB hit
      GI:94483580
      DQ508918
    • Hit length
      2,313 bp
    • E Value
      0E0
    • BLAST Score
      4,205.9 bits
    • Similarity
      99.48%
    • Coverage
      96.54%
    • Alignment (schematic)

      SEQ ID NO 1
      96.54% cov
      DQ508918
      100% cov
    • Alignment Length
      2,313 bp
    • CIGAR string
      23H140MN116MN491MN41MN98MN15MN103MN142MN75MN653MN140MN92MN195M60H mismatches: 12 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Russia/69)

    Influenza B virus (B/Russia/69)

    • Public DB hit
      GI:148509315
      EF626643
    • Hit length
      2,396 bp
    • E Value
      0E0
    • BLAST Score
      3,849.5 bits
    • Similarity
      95.7%
    • Coverage
      99.87%
    • Alignment (schematic)

      SEQ ID NO 1
      99.87% cov
      EF626643
      99.87% cov
    • Alignment Length
      2,396 bp
    • CIGAR string
      28MN15MNM2N4MN2MN29MN4MN3MN71MN20MN11MN23MN3MN58MN5MN8MN32MN2MN2MN5MN14MN65MN2MN8MN5MN5MN8MN5MN8MN17MN20MN14MN47MN32MN29MN20MN26MN17MN56MN38MN14MN5MN20MN38MN29MN15MN4MN42M2N6MN23MN59MN14MN29MN35MD6MI71MN23MN26MN38MN17MN2MN53MN11MN16MN24MN38MN71MN8MN2MN44MN11MN11MN23MN8MN30MN17MN58MN14MN68MN8MN17MN26MN14MN12MN46MI2MND20MN3MN46MN11MN38MN11MN8MN20MN16MIMD20MN14MN68MN66MN41M3H mismatches: 97 - insertions: 3 - deletions: 3
  • Influenza B virus

    Influenza B virus

    • Public DB hit
      GI:325283
      M20168
      1 of 3 hits reported for Influenza B virus.
    • Hit length
      2,396 bp
    • E Value
      0E0
    • BLAST Score
      3,727.7 bits
    • Similarity
      94.79%
    • Coverage
      99.87%
    • Alignment (schematic)

      SEQ ID NO 1
      99.87% cov
      M20168
      99.87% cov
    • Alignment Length
      2,397 bp
    • CIGAR string
      28MN5MN9MNM2NMI3MD2MN29MN4MN3MN17MN37MN15MN20MN11MN27MN7MN19MN30MN5MN8MN35MN8MN14MN65MN2MN8MN5MN5MN8MN5MN8MN17MN20MN14MN41MN5MN32MN14MN35MN26MN17MN56MN29MN23MN2MN2MN3MN16MN29MN8MN29MN15MN4MN42MN7MN20MN2MN23MN17MN17MN14MN29MN29MN5MD6MI2MN68MN23MN26MN35MN2MN20MN17MN20MN9MN4MN11MN41MN38MN44MN26MN8MN2MN44MN11MN11MN23MN8MN14MN8MN6MN17MN58MN14MN68MN8MN17MN2MN23MN14MN12MN4MN41MI2MND5MN14MN3MN46MN36MN13MN11MN5MN2MN20MN5MN10MIMD11MN8MN14MN68MN66MN41M3H mismatches: 117 - insertions: 4 - deletions: 4
  • Influenza B virus (B/Harbin/7/1994)

    Influenza B virus (B/Harbin/7/1994)

    • Public DB hit
      GI:237689804
      CY040448
    • Hit length
      2,400 bp
    • E Value
      0E0
    • BLAST Score
      3,522.7 bits
    • Similarity
      93.39%
    • Coverage
      99.37%
    • Alignment (schematic)

      SEQ ID NO 1
      99.37% cov
      CY040448
      99.21% cov
    • Alignment Length
      2,390 bp
    • CIGAR string
      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 mismatches: 140 - insertions: 9 - deletions: 9
  • Influenza B virus (B/Yamagata/16/1988)

    Influenza B virus (B/Yamagata/16/1988)

    • Public DB hit
      GI:119516716
      CY018772
    • Hit length
      2,352 bp
    • E Value
      0E0
    • BLAST Score
      3,519 bits
    • Similarity
      93.68%
    • Coverage
      98.16%
    • Alignment (schematic)

      SEQ ID NO 1
      98.16% cov
      CY018772
      100% cov
    • Alignment Length
      2,359 bp
    • CIGAR string
      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 mismatches: 135 - insertions: 7 - deletions: 7
  • Influenza B virus (B/Hong Kong/22/1989)

    Influenza B virus (B/Hong Kong/22/1989)

    • Public DB hit
      GI:119516735
      CY018780
    • Hit length
      2,351 bp
    • E Value
      0E0
    • BLAST Score
      3,517.1 bits
    • Similarity
      93.68%
    • Coverage
      98.12%
    • Alignment (schematic)

      SEQ ID NO 1
      98.12% cov
      CY018780
      100% cov
    • Alignment Length
      2,358 bp
    • CIGAR string
      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 mismatches: 135 - insertions: 7 - deletions: 7
  • Influenza B virus (B/Singapore/04/1991)

    Influenza B virus (B/Singapore/04/1991)

    • Public DB hit
      GI:119516754
      CY018788
    • Hit length
      2,352 bp
    • E Value
      0E0
    • BLAST Score
      3,502.4 bits
    • Similarity
      93.56%
    • Coverage
      98.16%
    • Alignment (schematic)

      SEQ ID NO 1
      98.16% cov
      CY018788
      100% cov
    • Alignment Length
      2,359 bp
    • CIGAR string
      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 mismatches: 138 - insertions: 7 - deletions: 7
  • Influenza B virus (B/Panama/45/1990)

    Influenza B virus (B/Panama/45/1990)

    • Public DB hit
      GI:119515747
      CY018356
    • Hit length
      2,351 bp
    • E Value
      0E0
    • BLAST Score
      3,500.5 bits
    • Similarity
      93.55%
    • Coverage
      98.12%
    • Alignment (schematic)

      SEQ ID NO 1
      98.12% cov
      CY018356
      100% cov
    • Alignment Length
      2,358 bp
    • CIGAR string
      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 mismatches: 138 - insertions: 7 - deletions: 7
  • Influenza B virus (B/Vienna/1/99)

    Influenza B virus (B/Vienna/1/99)

    • Public DB hit
      GI:148509296
      EF626635
    • Hit length
      2,396 bp
    • E Value
      0E0
    • BLAST Score
      3,489.4 bits
    • Similarity
      93%
    • Coverage
      99.87%
    • Alignment (schematic)

      SEQ ID NO 1
      99.87% cov
      EF626635
      99.87% cov
    • Alignment Length
      2,400 bp
    • CIGAR string
      28MN15MNM2N4MN2MN26MN2MN4MN3MN5MN5MN5MN53MN11MN8MN11MN3MN13MN8MDMI58MN5MN8MN35MN2MN5MN9MD5MI5MN59MN2MN8MN5MN14MN5MN8MN17MN11MN2MN5MN14MN8MN38MN32MN44MN3MNMN6MNMN14MN20MN20MN35MN2MN26MN8MN8MN5MN2MN23MN12MNMN14MN8MN8MN5MN14MN9MN5MN4MN11MN17MN12MN4MN2MN18MD3MI25MN23MN11MN14MN29MN29MN5MD6MI26MN11MN8MN23MN23MN20MN5MN15MN19MN2MN5MN9MN4MN11MN2MN5MN2MN14MN14MN50MN2MN110MN41MN14MN11MN11MN23MN8MN2MN11MN8MN6MN17MNMN56MN14MN2MN50MN14MN8MN8MI3MD5MN2MN8MN14MN11MN2MN9MNM2N4MN8MN29MN2MI2MND5MN14MN3MN37MN8MN11MN23M2N4MN2MN17MN29MN5MN2MN7MIMD11MN2MN5MN14MN56MN11MN66MN8MN3MN28M3H mismatches: 154 - insertions: 7 - deletions: 7
  • Influenza B virus (B/Hong Kong/557/2000)

    Influenza B virus (B/Hong Kong/557/2000)

    • Public DB hit
      GI:119516089
      CY018508
    • Hit length
      2,356 bp
    • E Value
      0E0
    • BLAST Score
      3,476.5 bits
    • Similarity
      93.32%
    • Coverage
      98.33%
    • Alignment (schematic)

      SEQ ID NO 1
      98.33% cov
      CY018508
      100% cov
    • Alignment Length
      2,365 bp
    • CIGAR string
      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 mismatches: 140 - insertions: 9 - deletions: 9
  • Influenza B virus (B/New York/24/1993)

    Influenza B virus (B/New York/24/1993)

    • Public DB hit
      GI:125663383
      CY019674
    • Hit length
      2,346 bp
    • E Value
      0E0
    • BLAST Score
      3,472.8 bits
    • Similarity
      93.41%
    • Coverage
      97.87%
    • Alignment (schematic)

      SEQ ID NO 1
      97.87% cov
      CY019674
      99.96% cov
    • Alignment Length
      2,351 bp
    • CIGAR string
      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 mismatches: 143 - insertions: 6 - deletions: 6
  • Influenza B virus (B/Victoria/504/2000)

    Influenza B virus (B/Victoria/504/2000)

    • Public DB hit
      GI:50059386
      AY504599
    • Hit length
      2,396 bp
    • E Value
      0E0
    • BLAST Score
      3,472.8 bits
    • Similarity
      92.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AY504599
      100% cov
    • Alignment Length
      2,403 bp
    • CIGAR string
      28MN15MNM2N4MN2MN26MN2MN4MN3MN5MN5MN5MN53MN11MN8MN11MN3MNMN11MN8MDMI58MN5MN8MN35MN2MN5M2N8MD5MI5MN59MN2MN8MN5MN14MN5MN8MN17MN11MN2MN5MN14MN8MN38MN32MN44MN3MNMN6MNMN14MN2MN17MN20MN35MN2MN26MN8MN8MN5MN2MN23MN12MNMN14MN8MN14MN14MN9MN5MN4MN8MN2MN30MN4MN2MN18MD3MI25MN23MN11MN14MN29MN29MN5MD6MI26MN11MN8MN23MN23MN20MN5MN15MN19MN2MN5MN9MN4MN11MN2MN2MN2MN2MN14MN14MN50MN2MN110MN41MN14MN11MN11MN23MN8MN2MN11MN8MN6MN10MN6MNMN56MN14MN2MN29MN20MN14MN8MN8MI3MD5MN2MN8MN14MN11MN2MN9MNM2N4MN8MN29MN2MI2MND5MN14MN3MN37MN8MN11MN23M2N4MN2MN17MN29MN5MN10MIMD11MN2MN5MN14MN56MN11MN66MN8MN3MN31M mismatches: 158 - insertions: 7 - deletions: 7
  • Influenza B virus (B/Hong Kong/03/1992)

    Influenza B virus (B/Hong Kong/03/1992)

    • Public DB hit
      GI:119516773
      CY018796
    • Hit length
      2,352 bp
    • E Value
      0E0
    • BLAST Score
      3,469.1 bits
    • Similarity
      93.31%
    • Coverage
      98.16%
    • Alignment (schematic)

      SEQ ID NO 1
      98.16% cov
      CY018796
      100% cov
    • Alignment Length
      2,360 bp
    • CIGAR string
      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 mismatches: 142 - insertions: 8 - deletions: 8
  • Influenza B virus (B/Taiwan/1197/1994)

    Influenza B virus (B/Taiwan/1197/1994)

    • Public DB hit
      GI:119516868
      CY018836
    • Hit length
      2,352 bp
    • E Value
      0E0
    • BLAST Score
      3,465.4 bits
    • Similarity
      93.3%
    • Coverage
      98.08%
    • Alignment (schematic)

      SEQ ID NO 1
      98.08% cov
      CY018836
      99.91% cov
    • Alignment Length
      2,359 bp
    • CIGAR string
      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 mismatches: 140 - insertions: 9 - deletions: 9
  • Influenza B virus (B/Russia/22/1995)

    Influenza B virus (B/Russia/22/1995)

    • Public DB hit
      GI:119516165
      CY018540
    • Hit length
      2,355 bp
    • E Value
      0E0
    • BLAST Score
      3,463.6 bits
    • Similarity
      93.23%
    • Coverage
      98.29%
    • Alignment (schematic)

      SEQ ID NO 1
      98.29% cov
      CY018540
      100% cov
    • Alignment Length
      2,364 bp
    • CIGAR string
      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 mismatches: 142 - insertions: 9 - deletions: 9
  • Influenza B virus (B/Victoria/02/1987)

    Influenza B virus (B/Victoria/02/1987)

    • Public DB hit
      GI:119516697
      CY018764
    • Hit length
      2,351 bp
    • E Value
      0E0
    • BLAST Score
      3,461.7 bits
    • Similarity
      93.26%
    • Coverage
      98.12%
    • Alignment (schematic)

      SEQ ID NO 1
      98.12% cov
      CY018764
      100% cov
    • Alignment Length
      2,358 bp
    • CIGAR string
      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 mismatches: 145 - insertions: 7 - deletions: 7
  • Influenza B virus (B/California/02/1995)

    Influenza B virus (B/California/02/1995)

    • Public DB hit
      GI:148904986
      CY022244
    • Hit length
      2,352 bp
    • E Value
      0E0
    • BLAST Score
      3,459.9 bits
    • Similarity
      93.26%
    • Coverage
      98.08%
    • Alignment (schematic)

      SEQ ID NO 1
      98.08% cov
      CY022244
      99.91% cov
    • Alignment Length
      2,359 bp
    • CIGAR string
      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 mismatches: 141 - insertions: 9 - deletions: 9
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
2
Length
2,368
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Influenza virus B/Lee/40
Determined organism
  • Influenza B virus (B/Lee/40)

    Influenza B virus (B/Lee/40)

    • Public DB hit
      GI:325275
      M14880
      1 of 4 hits reported for Influenza B virus (B/Lee/40).
    • Hit length
      2,368 bp
    • E Value
      0E0
    • BLAST Score
      4,335.2 bits
    • Similarity
      99.7%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      M14880
      100% cov
    • Alignment Length
      2,368 bp
    • CIGAR string
      336M2N228MN277MN503MN329MN165MN523M mismatches: 7 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-17(Lee/1940-Malaysia/2506/2004))

    Influenza B virus (B/NYMC BX-17(Lee/1940-Malaysia/2506/2004))

    • Public DB hit
      GI:194351727
      CY033874
    • Hit length
      2,331 bp
    • E Value
      0E0
    • BLAST Score
      4,261.3 bits
    • Similarity
      99.66%
    • Coverage
      98.44%
    • Alignment (schematic)

      SEQ ID NO 2
      98.44% cov
      CY033874
      100% cov
    • Alignment Length
      2,331 bp
    • CIGAR string
      19H15MN411MN86MN195MN114MN66MN898MN517MN21M18H mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-15(Lee/1940-Hawaii/33/2004))

    Influenza B virus (B/NYMC BX-15(Lee/1940-Hawaii/33/2004))

    • Public DB hit
      GI:225676812
      CY038285
    • Hit length
      2,332 bp
    • E Value
      0E0
    • BLAST Score
      4,259.5 bits
    • Similarity
      99.66%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 2
      98.4% cov
      CY038285
      99.91% cov
    • Alignment Length
      2,330 bp
    • CIGAR string
      18H16MN411MN86MN195MN114MN66MN898MN517MN19M20H mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    • Public DB hit
      GI:194351613
      CY033826
    • Hit length
      2,329 bp
    • E Value
      0E0
    • BLAST Score
      4,257.6 bits
    • Similarity
      99.66%
    • Coverage
      98.35%
    • Alignment (schematic)

      SEQ ID NO 2
      98.35% cov
      CY033826
      100% cov
    • Alignment Length
      2,329 bp
    • CIGAR string
      19H15MN411MN86MN195MN114MN66MN898MN517MN19M20H mismatches: 8 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Hong Kong/05/1972)

    Influenza B virus (B/Hong Kong/05/1972)

    • Public DB hit
      GI:94483608
      DQ508919
    • Hit length
      2,259 bp
    • E Value
      0E0
    • BLAST Score
      4,145 bits
    • Similarity
      99.78%
    • Coverage
      95.4%
    • Alignment (schematic)

      SEQ ID NO 2
      95.4% cov
      DQ508919
      100% cov
    • Alignment Length
      2,259 bp
    • CIGAR string
      20H14MN411MN282MN114MN66MN1367M89H mismatches: 5 - insertions: 0 - deletions: 0
  • Influenza B virus

    Influenza B virus

    • Public DB hit
      GI:325279
      M20169
      1 of 3 hits reported for Influenza B virus.
    • Hit length
      2,369 bp
    • E Value
      0E0
    • BLAST Score
      3,803.4 bits
    • Similarity
      95.66%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      M20169
      100% cov
    • Alignment Length
      2,373 bp
    • CIGAR string
      13MI21MN8MN14MN53MN47MN49MN36MN5MN26MN92MN2MN8MN2MN14MN11MN5MN62MN26MN29MN16MN9MN50MN5MN8MN23MN44MN65MN50MN11MN2MN14MN14MN14MN14MN2MN17MN5MN143MN29MN14MN2MN69MNMN8MN5MN27MD2MI5MN2MN32MN2MN2MN20MN41MN5MN131MN14MN8MN38MN14MN8MN14MN53MN8MN80MN56MN23MDMI17MN7MN17MN6MN13MN8MN50MN8MN11MN2MN8MN3MN16MN21MIMD99MN2MN11MN20MN17MN35MN2MN5MN8MN8MN2MN5MN2MN35MN6MN2MD2MI24MN15MN39M mismatches: 94 - insertions: 5 - deletions: 4
  • Influenza B virus (B/Russia/69)

    Influenza B virus (B/Russia/69)

    • Public DB hit
      GI:148509313
      EF626642
    • Hit length
      2,369 bp
    • E Value
      0E0
    • BLAST Score
      3,792.3 bits
    • Similarity
      95.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      EF626642
      100% cov
    • Alignment Length
      2,372 bp
    • CIGAR string
      13MI21MN8MN14MN53MN47MN49MN36MN5MN26MN92MN2MN8MN2MN8MN5MN11MN5MN62MN20MN5MN29MN16MN60MN5MN8MN23MN17MN26MN20MN44MN50MN11MN2MN8MN5MN14MN14MN14MN2MN17MN5MN143MN29MN14MN2MN69MN10MN5MN27MD2MI2MN2MN2MN32MN2MN2MN20MN41MN5MN131MN14MN8MN38MN14MN8MN14MN53MN8MN80MN56MN23MDMI17MN7MN17MN6MN13MN8MN50MN8MN11MN2MN8MN3MN16MN122MN2MN11MN20MN17MN35MN2MN5MN8MN8MN2MN5MN2MN35MN6MN2MD2MI24MN15MN39M mismatches: 98 - insertions: 4 - deletions: 3
  • Influenza B virus (B/Texas/37/1988)

    Influenza B virus (B/Texas/37/1988)

    • Public DB hit
      GI:125663286
      CY019609
    • Hit length
      2,328 bp
    • E Value
      0E0
    • BLAST Score
      3,541.1 bits
    • Similarity
      94.12%
    • Coverage
      98.31%
    • Alignment (schematic)

      SEQ ID NO 2
      98.31% cov
      CY019609
      100% cov
    • Alignment Length
      2,331 bp
    • CIGAR string
      19H15MN8MN14MN35MN17MN38MN8MN23MN24M2N4MN37MN20MN5MN92MN2MN8MN2MN14MN11MN2MN2MN62MN26M2N10MN17MN4MN11MN47MN12MN5MN8MN5MN17MN44MN35MN14MN65MN11MN2MN8MN5MN14MN14MN14MN2MN12MN4MN5MN2MN29MN29MN60MN10MN8MN17MN11MN14MN2MN11MN5MN10MN40MN16MN27MD2MI5MN2MN32MN2MN2MN17MN2MN17MN23MN5MN29MN32MN17M2N49MN14MN8MN38MN14MN8MN14MN53MN8MN74MN5MN59MN17MN2MDMI10MN6MN4MN2MN17MN6MN13MN8MN8MN41MN8MN11MN2MN8MN3MN16MN8MN62MN50MN2MN11MN11MN8MN2MN14MN26MN8MN2MN5MN8MN8MN2MN5MN2MN35MN6MN2MD2MI24MN15M2N17M21H mismatches: 131 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Victoria/02/1987)

    Influenza B virus (B/Victoria/02/1987)

    • Public DB hit
      GI:119516695
      CY018763
    • Hit length
      2,334 bp
    • E Value
      0E0
    • BLAST Score
      3,530.1 bits
    • Similarity
      93.97%
    • Coverage
      98.56%
    • Alignment (schematic)

      SEQ ID NO 2
      98.56% cov
      CY018763
      100% cov
    • Alignment Length
      2,337 bp
    • CIGAR string
      13H21MN8MN11MN2MN35MN17MN38MN8MN23MN23M3N42MN14MN5MN5MN92MN2MN8MN2MN14MN11MN2MN2MN89MN11MN17MN4MN11MN60MN5MN8MN16MN6MN24MN19MN35MN14MN14MN50MN11MN2MN8MN5MN14MN14MN14MN2MN17MN5MN2MN29MN101MN2MN5MN17MN11MN14MN2MN17MN10MN40MN16MN27MD2MI5MN2MN32MN2MN2MN17MN2MN41MN5MN29MN8MN23MN17M2N49MN14MN8MN38MN11MN2MN8MN14MN53MN2MN5MN74MN5MN14MN41MN2MN17MN2MDMI17MN4MN2MN17MN6MN13MN8MN8MN20MN20MN8MN11MN2MN8MN3MN16MN8MN29MN44MN38MN2MN11MN11MN5MN2MN2MN14MN33MNMN2MN5MN8MN8MN2MN5MN2MN35MN6MN2MD2MI24MN13MNMN18M21H mismatches: 135 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Hong Kong/02/1993)

    Influenza B virus (B/Hong Kong/02/1993)

    • Public DB hit
      GI:119516828
      CY018819
    • Hit length
      2,328 bp
    • E Value
      0E0
    • BLAST Score
      3,502.4 bits
    • Similarity
      93.82%
    • Coverage
      98.31%
    • Alignment (schematic)

      SEQ ID NO 2
      98.31% cov
      CY018819
      100% cov
    • Alignment Length
      2,331 bp
    • CIGAR string
      19H15MN8MN11MN2MN35MN17MN38MN8MN23MN23M3N36MN5MN14MN5MN5MN44MN47MN2MN11MN5MN8MN11MN2MN2MN89MN11MN17MN4MN11MN60MN5MN8MN16MN6MN44MN35MN8MN5MN14MN50MN14MN8MN5MN14MN14MN14MN2MN17MN5MN2MN29MN5MN68MN26MN2MN5MN17MN11MN14MN2MN17MN2MN7MN40MN16MN27MD2MI5MN2MN32MN2MN2MN62MN5MN29MN8MN23MN17M2N49MN14MN44MN2MN11MN2MN8MN14MN53MN8MN74MN5MN14MN9MN31MN2MN17MN2MDMI17MN4MN2MN17MN6MN13MN8MN8MN20MN20MN8MN11MN2MN8MN3MN16MN8MN29MN83MN2MN11MN11MN5MN2MN2MN5MN8MN33MNMN2MN5MN8MN8MN2MN5MN2MN35MN6MN2MD2MI24MN13MNMN7MN10M21H mismatches: 138 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Yamagata/16/1988)

    Influenza B virus (B/Yamagata/16/1988)

    • Public DB hit
      GI:119516714
      CY018771
    • Hit length
      2,328 bp
    • E Value
      0E0
    • BLAST Score
      3,502.4 bits
    • Similarity
      93.83%
    • Coverage
      98.31%
    • Alignment (schematic)

      SEQ ID NO 2
      98.31% cov
      CY018771
      100% cov
    • Alignment Length
      2,333 bp
    • CIGAR string
      20H14MN8MN14MN50MN2MN18MN19MN8MN8MN14MN3MN7MN2MN9M2N42MN20MN5MN92MN2MN8MN2MN14MN11MN2MN2MN8MN17MN17MN17MN8MN14MN2MN29MN16MN60MN5MN8MN5MN17MN26MN17MN14MN20MN5MN8MN14MN6MN43MN11MN11MN20MN14MN14MN2MN17MN5MN2MN140MN14MN2MN11MN14MN2MN17MN10M2N39MN10MN5MN27MD2MI5MN2MN32MN2MN2MN17MN2MN41MN5MN62MN17M2N49MDMI13MN8MN2MN33MNMN14MN8MN14MN53MN8MN38MN41MN2MN53MN23MDMI17MNMN5MN14MN2MN6MN13MN8MN2MN5MN41MN20MN2MN8MI3MND13MN2MN5MN2MN47MN65MN2MN11MN20MN17MN35MN2MN5MN8MN8MN2MN5MN2MN35MN9MD2MI24MN11MNMNM2N18M20H mismatches: 134 - insertions: 5 - deletions: 5
  • Influenza B virus (B/Hong Kong/330/2001 egg adapted)

    Influenza B virus (B/Hong Kong/330/2001 egg adapted)

    • Public DB hit
      GI:50059426
      AY504616
    • Hit length
      2,369 bp
    • E Value
      0E0
    • BLAST Score
      3,482.1 bits
    • Similarity
      93.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY504616
      100% cov
    • Alignment Length
      2,374 bp
    • CIGAR string
      13MI21MN8MN11MN2MN35MN8MN8MN38MN8MN23MN23M3N15MN20MN5MN2MN11MN5MN5MN35MN32MN23MN2MN8MN2MN26MN2MN2MN11MN5MN14MN44MN11MN11MN17MN4MN11MN31MN28MN14MN16MD2MI4MN44MN35MN14MN14MN35MN14MN14MN8MN5MN14MN5MN8MN14MN2MN17MN5MN2MN29MN5MN56MN27MN10MN2MN5MN14MN2MN11MN14MN2MN14MD3MI10MN40MN16MN27MD2MI5MN2MN32MN2MN2MN17MN2MN41MN5MN29MN8MN23MN17M2N49MN14MN8MN38MN11MN2MN8MN14MN47MN5MN2MN5MN17MN56MN5MN14MN41MN2MN17MN2MDMI8MN8MN7MN20MN3MN13MN8MN8MN20MN20MN8MN11MN2MN8MN3MN16MN8MN2MN26MN12MN70MN2MN11MN11MN2MN2MN2MN2MN14MN33MNMN2MN5MN8MN8MN2MN5MN2MN35MN6MN2MD2MI24MN13MNMN39M mismatches: 150 - insertions: 6 - deletions: 5
  • Influenza B virus (B/Hong Kong/330/2001)

    Influenza B virus (B/Hong Kong/330/2001)

    • Public DB hit
      GI:50059407
      AY504608
    • Hit length
      2,369 bp
    • E Value
      0E0
    • BLAST Score
      3,482.1 bits
    • Similarity
      93.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY504608
      100% cov
    • Alignment Length
      2,374 bp
    • CIGAR string
      13MI21MN8MN11MN2MN35MN8MN8MN38MN8MN23MN23M3N15MN20MN5MN2MN11MN5MN5MN35MN32MN23MN2MN8MN2MN26MN2MN2MN11MN5MN14MN44MN11MN11MN17MN4MN11MN31MN28MN14MN16MD2MI4MN44MN35MN14MN14MN35MN14MN14MN8MN5MN14MN5MN8MN14MN2MN17MN5MN2MN29MN5MN56MN27MN10MN2MN5MN14MN2MN11MN14MN2MN14MD3MI10MN40MN16MN27MD2MI5MN2MN32MN2MN2MN17MN2MN41MN5MN29MN8MN23MN17M2N49MN14MN8MN38MN11MN2MN8MN14MN47MN5MN2MN5MN17MN56MN5MN14MN41MN2MN17MN2MDMI8MN8MN7MN20MN3MN13MN8MN8MN20MN20MN8MN11MN2MN8MN3MN16MN8MN2MN26MN12MN70MN2MN11MN11MN2MN2MN2MN2MN14MN33MNMN2MN5MN8MN8MN2MN5MN2MN35MN6MN2MD2MI24MN13MNMN39M mismatches: 150 - insertions: 6 - deletions: 5
  • Influenza B virus (B/Norway/1/84)

    Influenza B virus (B/Norway/1/84)

    • Public DB hit
      GI:6318386
      AF102001
    • Hit length
      2,259 bp
    • E Value
      0E0
    • BLAST Score
      3,480.2 bits
    • Similarity
      94.47%
    • Coverage
      95.4%
    • Alignment (schematic)

      SEQ ID NO 2
      95.4% cov
      AF102001
      100% cov
    • Alignment Length
      2,261 bp
    • CIGAR string
      20H14MN8MN14MN35MN17MN38MN8MN23MN24M2N42MN20MN5MN92MN2MN8MN2MN14MN11MN2MN2MN8MN53MN26MN11MN17MN4MN72MN5MN8MN23MN44MN35MN14MN14MN50MN11MN2MN8MN5MN14MN14MN14MN2MN17MN5MN2MN29MN101MN8MN17MN11MN14MN2MN17MN10MN40MN16MN27MD2MI5MN2MN32MN2MN2MN17MN2MN41MN5MN29MN32MN17M2NMN47MN14MN8MN8MN29MN14MN8MN14MN53MN8MN74MN5MN56MN2MN17MN2MDMI17MN4MN2MN17MN6MN13MN8MN8MN41MN8MN11MN2MN8MN3MN16MN8MN68MN44MN2MN11MN11MN8MN2MN14MN33MNMN2MN5MN8MN8MN2MN5MN2MN35MN3M89H mismatches: 121 - insertions: 2 - deletions: 2
  • Influenza B virus (B/Connecticut/07/1993)

    Influenza B virus (B/Connecticut/07/1993)

    • Public DB hit
      GI:119516809
      CY018811
    • Hit length
      2,319 bp
    • E Value
      0E0
    • BLAST Score
      3,474.7 bits
    • Similarity
      93.71%
    • Coverage
      97.93%
    • Alignment (schematic)

      SEQ ID NO 2
      97.93% cov
      CY018811
      100% cov
    • Alignment Length
      2,322 bp
    • CIGAR string
      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 mismatches: 140 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Singapore/222/79)

    Influenza B virus (B/Singapore/222/79)

    • Public DB hit
      GI:6318392
      AF102004
    • Hit length
      2,259 bp
    • E Value
      0E0
    • BLAST Score
      3,474.7 bits
    • Similarity
      94.43%
    • Coverage
      95.4%
    • Alignment (schematic)

      SEQ ID NO 2
      95.4% cov
      AF102004
      100% cov
    • Alignment Length
      2,261 bp
    • CIGAR string
      20H14MN8MN14MN32MN20MN38MN8MN23MN24M2N42MN20MN5MN38MN53MN2MN8MN2MN14MN11MN2MN2MN62MN26MN29MN2MNMN11MN60MN5MN8MN23MN44MN35MN14MN14MN50MN11MN2MN8MN5MN14MN14MN14MN2MN12MN4MN5MN2MN140MN17MN11MN14MN2MN17MN10MN40MN10MN5MN20MN6MD2MI5MN2MN32MN2MN2MN17MN2MN36MN4MN5MN38MN11MN11MN17M2N49MN14MN8MN38MN14MN8MN14MN11MN41MN8MN80MN56MN23MDMI17MN7MN17MN6MN13MN8MN5MN2MN41MN8MN5MN5MN2MN8MN3MN16MN8MN56MN56MN2MN11MN11MN8MN17MN29MN3MNMN2MN5MN8MN8MN2MN5MN2MN35MN3M89H mismatches: 122 - insertions: 2 - deletions: 2
  • Influenza B virus (B/Ibaraki/2/85)

    Influenza B virus (B/Ibaraki/2/85)

    • Public DB hit
      GI:6318382
      AF101999
    • Hit length
      2,259 bp
    • E Value
      0E0
    • BLAST Score
      3,469.1 bits
    • Similarity
      94.38%
    • Coverage
      95.4%
    • Alignment (schematic)

      SEQ ID NO 2
      95.4% cov
      AF101999
      100% cov
    • Alignment Length
      2,261 bp
    • CIGAR string
      20H14MN8MN14MN35MN17MN38MN8MN23MN24M2N42MN20MN5MN92MN2MN8MN2MN5MN8MN11MN2MN2MN62MN26MN11MN3MN13MN4MN11MN60MN5MN8MN5MN17MN44MN35MN14MN14MN50MN11MN2MN8MN5MN14MN14MN14MN2MN17MN5MN2MN29MN101MN8MN17MN11MN11MN2MN2MN17MN10MN40MN16MN27MD2MI5MN2MN32MN2MN2MN17MN2MN41MN5MN29MN32MN17M2N49MN14MN8MN38MN14MN8MN14MN53MN8MN74MN5MN56MN2MN17MN2MDMI17MN4MN2MN17MN6MN13MN8MN8MN41MN8MN11MN2MN8MN3MN16MN8MN113MN2MN11MN11MN8MN2MN14MN33MNMN2MN5MN8MN7M2N2MN5MN2MN35MN3M89H mismatches: 123 - insertions: 2 - deletions: 2
  • Influenza B virus (B/Osaka/547/1997)

    Influenza B virus (B/Osaka/547/1997)

    • Public DB hit
      GI:119516220
      CY018563
    • Hit length
      2,330 bp
    • E Value
      0E0
    • BLAST Score
      3,467.3 bits
    • Similarity
      93.53%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 2
      98.4% cov
      CY018563
      100% cov
    • Alignment Length
      2,333 bp
    • CIGAR string
      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 mismatches: 145 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Texas/14/1991)

    Influenza B virus (B/Texas/14/1991)

    • Public DB hit
      GI:125664391
      CY019657
    • Hit length
      2,322 bp
    • E Value
      0E0
    • BLAST Score
      3,463.6 bits
    • Similarity
      93.59%
    • Coverage
      98.06%
    • Alignment (schematic)

      SEQ ID NO 2
      98.06% cov
      CY019657
      100% cov
    • Alignment Length
      2,325 bp
    • CIGAR string
      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 mismatches: 143 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Ann Arbor/1/1986)

    Influenza B virus (B/Ann Arbor/1/1986)

    • Public DB hit
      GI:94483606
      DQ508911
    • Hit length
      2,259 bp
    • E Value
      0E0
    • BLAST Score
      3,463.6 bits
    • Similarity
      94.34%
    • Coverage
      95.4%
    • Alignment (schematic)

      SEQ ID NO 2
      95.4% cov
      DQ508911
      100% cov
    • Alignment Length
      2,261 bp
    • CIGAR string
      20H14MN8MN14MN35MN17MN38MN8MN23MN24M2N4MN37MN20MN5MN92MN2MN8MN2MN14MN11MN2MN2MN62MN26MN11MN17MN4MN11MN60MN5MN8MN5MN17MN44MN35MN14MN14MN50MN11MN2MN8MN5MN14MN14MN14MN2MN17MN5MN2MN29MN29MN35MN35MN8MN17MN11MN14MN2MN17MN10MN40MN16MN27MD2MI5MN2MN32MN2MN2MN17MN2MN41MN5MN29MN32MN17M2N49MN14MN8MN38MN14MN8MN14MN53MN8MN74MN5MN56MN2MN11MN5MN2MDMI17MN4MN2MN17MN6MN13MN8MN8MN32MN8MN8MN11MN2MN8MN3MN16MN8MN113MN2MN11MN11MN8MN2MN14MN33MNMN2MN5MN8MN8MN2MN5MN2MN35MN3M89H mismatches: 124 - insertions: 2 - deletions: 2
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
3
Length
2,307
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Influenza virus B/Lee/40
Determined organism
  • Influenza B virus (B/Lee/40)

    Influenza B virus (B/Lee/40)

    • Public DB hit
      GI:110676602
      DQ792896
      1 of 3 hits reported for Influenza B virus (B/Lee/40).
    • Hit length
      2,275 bp
    • E Value
      0E0
    • BLAST Score
      4,135.8 bits
    • Similarity
      99.47%
    • Coverage
      98.61%
    • Alignment (schematic)

      SEQ ID NO 3
      98.61% cov
      DQ792896
      100% cov
    • Alignment Length
      2,276 bp
    • CIGAR string
      16H11MN177MN189MN82MN323MN281MN173MN79MN151MD3MI541MN187MN67M16H mismatches: 10 - insertions: 1 - deletions: 1
  • Influenza B virus (B/Hong Kong/8/1973)

    Influenza B virus (B/Hong Kong/8/1973)

    • Public DB hit
      GI:126361877
      EF456779
    • Hit length
      2,252 bp
    • E Value
      0E0
    • BLAST Score
      4,130.2 bits
    • Similarity
      99.78%
    • Coverage
      97.57%
    • Alignment (schematic)

      SEQ ID NO 3
      97.57% cov
      EF456779
      99.96% cov
    • Alignment Length
      2,251 bp
    • CIGAR string
      6H411MN150MN134MN5MN2MN1544M50H mismatches: 5 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-15(Lee/1940-Hawaii/33/2004))

    Influenza B virus (B/NYMC BX-15(Lee/1940-Hawaii/33/2004))

    • Public DB hit
      GI:225676810
      CY038284
    • Hit length
      2,255 bp
    • E Value
      0E0
    • BLAST Score
      4,104.4 bits
    • Similarity
      99.51%
    • Coverage
      97.75%
    • Alignment (schematic)

      SEQ ID NO 3
      97.75% cov
      CY038284
      100% cov
    • Alignment Length
      2,256 bp
    • CIGAR string
      29H366MN82MN323MN281MN173MN79MN151MD3MI541MN179MN7MN60M23H mismatches: 9 - insertions: 1 - deletions: 1
  • Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    • Public DB hit
      GI:194351611
      CY033825
    • Hit length
      2,255 bp
    • E Value
      0E0
    • BLAST Score
      4,104.4 bits
    • Similarity
      99.51%
    • Coverage
      97.75%
    • Alignment (schematic)

      SEQ ID NO 3
      97.75% cov
      CY033825
      100% cov
    • Alignment Length
      2,256 bp
    • CIGAR string
      29H366MN82MN323MN281MN173MN79MN151MD3MI541MN179MN7MN60M23H mismatches: 9 - insertions: 1 - deletions: 1
  • Influenza B virus (B/Hong Kong/05/1972)

    Influenza B virus (B/Hong Kong/05/1972)

    • Public DB hit
      GI:94481513
      DQ508920
    • Hit length
      2,181 bp
    • E Value
      0E0
    • BLAST Score
      3,978.8 bits
    • Similarity
      99.59%
    • Coverage
      94.54%
    • Alignment (schematic)

      SEQ ID NO 3
      94.54% cov
      DQ508920
      100% cov
    • Alignment Length
      2,182 bp
    • CIGAR string
      29H366MN82MN323MN281MN173MN79MN151MD3MI541MN174M97H mismatches: 7 - insertions: 1 - deletions: 1
  • Influenza B virus (B/Russia/69)

    Influenza B virus (B/Russia/69)

    • Public DB hit
      GI:148509311
      EF626641
    • Hit length
      2,307 bp
    • E Value
      0E0
    • BLAST Score
      3,718.4 bits
    • Similarity
      95.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF626641
      100% cov
    • Alignment Length
      2,310 bp
    • CIGAR string
      27MN18MD3MI2MI3MD65MN6MNMN53MN11MN8MN32MN5MN11MN101MN2MN23MN5MN3MN19MN27MN30MN3MN21MN7MN66MN7MN14MN47MN14MN47MN2MN11MN89MN5MN56MN26MN14MI3MD23MN2MN13MN3MN11MN20MN40MN3MN26MN14MN48MN10MN35MN14MN11MN12MN16MN50MN17MN5MN62MN8MN53MN49MN42MN12MN2MN4MN2MN2MN26MN10MN6MN35MN4MN27MN44MN62MN32MN5MN11MN53MN5MN14MN65MN59MN5MN35MN6MN4MN17MN45MN10MN11MN31MN2MN4MN16MN23MN49M mismatches: 92 - insertions: 3 - deletions: 3
  • Influenza B virus

    Influenza B virus

    • Public DB hit
      GI:325271
      M20171
      1 of 4 hits reported for Influenza B virus.
    • Hit length
      2,308 bp
    • E Value
      0E0
    • BLAST Score
      3,607.6 bits
    • Similarity
      94.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      M20171
      100% cov
    • Alignment Length
      2,309 bp
    • CIGAR string
      27MN18MD3MI2MN68MN6MNMN53MN11MN8MN32MN5MN11MN101MN2MN23MN5MN3MN19MN27MN34MN11MN9MN7MN66MN7MN14MN5MN8MN47MN41MN5MN2MN11MN5MN59MN23MN5MN56MN2MN23MN14MN26MN2MN13MN3MN11MN20MN40MNMNMN26MN12MNMN48MN10MN35MN14MN11MN2MN26M2N14MN4MN29MN17MN9MN58MN8MN53MN2MN26MN11MN7MN6MN5MN12MN16MN12MN2MN4MN2MN2MN26MN17MN35MN4MN10MN16MN6MN34MN2MN62MN11MN20MN5MN37MN27MN5MN14MN47MN17MN59MN5MN17MN17MN6MN4MN17MN45MN10MN2MN8MN34MN21MN23MN8MI3MN37M mismatches: 115 - insertions: 2 - deletions: 1
  • Influenza B virus (B/Singapore/222/79)

    Influenza B virus (B/Singapore/222/79)

    • Public DB hit
      GI:325293
      M16711
    • Hit length
      2,304 bp
    • E Value
      0E0
    • BLAST Score
      3,380.5 bits
    • Similarity
      93.19%
    • Coverage
      99.78%
    • Alignment (schematic)

      SEQ ID NO 3
      99.78% cov
      M16711
      99.83% cov
    • Alignment Length
      2,307 bp
    • CIGAR string
      10MNMN14MN18MD3MI2MN49MDMI17MN6MNMN23MN29MN11MN5MI4MD31MN5MN11MN8MN76MN15MN2MN23MN5MN3MN47MN4MN29MN11MN9MN7MN17MN41MN2MN3MN22MN5MN8MN20MN22MN3MN41MN5MN2MN11MN5MN53MN5MN23MN5MN56MN2MN11MN26MN26MN2MN13MN3MN11MN20MN33MN6MNMNMN26MN12MNMN48MN10MN35MN4MN9MN8MD3MI2MN26M2N14MN4MN17MN2MN8MN11MN5MN68MN26MN2MN17MN14MN2MN26MN5MN5M3D5MN6MN5MN29MN2MN9MN2MN4MN2MN2MN26MN17MN35MN4MN10MN13MN2MN6MN28MN5MN2MN62MN11MN20MN5MN22MN9MN4M2N26MN5MN14MN29MN17MN17MN26MN23MN8MN5MN14MN2MN17MN6MN22MN45MN7MN2MN2MN8MN9MN24MN5MN5M2N8MN23MN16MI4M2N4M2N16M5H mismatches: 145 - insertions: 5 - deletions: 7
  • Influenza B virus (B/Texas/37/1988)

    Influenza B virus (B/Texas/37/1988)

    • Public DB hit
      GI:125663284
      CY019608
    • Hit length
      2,268 bp
    • E Value
      0E0
    • BLAST Score
      3,362 bits
    • Similarity
      93.44%
    • Coverage
      98.27%
    • Alignment (schematic)

      SEQ ID NO 3
      98.27% cov
      CY019608
      100% cov
    • Alignment Length
      2,272 bp
    • CIGAR string
      17H10MN18MD3MI2MN56MN11MN6MNMN53MN11MN8MN32MN5MN11MN8MN77MN14MN2MN23MN5MN3MN7MN11MN27MN4MN29MN11MN9MN7MN17MN5MN17MN17MN29MN5MN8MN20MN26MN41MN5MN2MN11MN5MI3MD50MN5MN23MN5MN56MN2MN11MN26MI3MD14MNMN6MN2MN13MNMNMN11MN20MN23MN9MN6MNMNMN17MN8MN12MNMN11MN23MN12MN10MN29MN5MN26MN2MN23MN2M2N19MN5MN23MN17MN8MN50MN8MN29MN15MNMN14MN2MN26MN11MN7MD7MI2MN2MN29MN12MN2MN4MN2MN2MN26MN17MN11MN23MN4MN6MN3MN13MN9MN34MN20MN44MN11MN20MN5MN17MN17MNM2N20MN11MN14MN29MN35MN11MN8MN29MN14MN14MN2MN17MN6MN22MN45MN10MN2MN8MN34MN5MN5MN9MN23MN16MI10M23H mismatches: 140 - insertions: 5 - deletions: 4
  • Influenza B virus (B/Victoria/02/1987)

    Influenza B virus (B/Victoria/02/1987)

    • Public DB hit
      GI:119516693
      CY018762
    • Hit length
      2,271 bp
    • E Value
      0E0
    • BLAST Score
      3,362 bits
    • Similarity
      93.4%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 3
      98.4% cov
      CY018762
      100% cov
    • Alignment Length
      2,272 bp
    • CIGAR string
      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 mismatches: 147 - insertions: 2 - deletions: 1
  • Influenza B virus (B/Czechoslovakia/69/1990)

    Influenza B virus (B/Czechoslovakia/69/1990)

    • Public DB hit
      GI:125889216
      CY019632
    • Hit length
      2,263 bp
    • E Value
      0E0
    • BLAST Score
      3,302.9 bits
    • Similarity
      93.02%
    • Coverage
      98.05%
    • Alignment (schematic)

      SEQ ID NO 3
      98.05% cov
      CY019632
      100% cov
    • Alignment Length
      2,264 bp
    • CIGAR string
      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 mismatches: 155 - insertions: 2 - deletions: 1
  • Influenza B virus (B/Hong Kong/02/1993)

    Influenza B virus (B/Hong Kong/02/1993)

    • Public DB hit
      GI:119516826
      CY018818
    • Hit length
      2,273 bp
    • E Value
      0E0
    • BLAST Score
      3,288.2 bits
    • Similarity
      92.79%
    • Coverage
      98.48%
    • Alignment (schematic)

      SEQ ID NO 3
      98.48% cov
      CY018818
      100% cov
    • Alignment Length
      2,276 bp
    • CIGAR string
      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 mismatches: 157 - insertions: 4 - deletions: 3
  • Influenza B virus (B/Hong Kong/70/1996)

    Influenza B virus (B/Hong Kong/70/1996)

    • Public DB hit
      GI:119516199
      CY018554
    • Hit length
      2,273 bp
    • E Value
      0E0
    • BLAST Score
      3,282.6 bits
    • Similarity
      92.74%
    • Coverage
      98.48%
    • Alignment (schematic)

      SEQ ID NO 3
      98.48% cov
      CY018554
      100% cov
    • Alignment Length
      2,274 bp
    • CIGAR string
      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 mismatches: 162 - insertions: 2 - deletions: 1
  • Influenza B virus (B/Ibaraki/2/85)

    Influenza B virus (B/Ibaraki/2/85)

    • Public DB hit
      GI:6318416
      AF102016
    • Hit length
      2,204 bp
    • E Value
      0E0
    • BLAST Score
      3,273.4 bits
    • Similarity
      93.48%
    • Coverage
      95.54%
    • Alignment (schematic)

      SEQ ID NO 3
      95.54% cov
      AF102016
      100% cov
    • Alignment Length
      2,207 bp
    • CIGAR string
      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 mismatches: 138 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Texas/14/1991)

    Influenza B virus (B/Texas/14/1991)

    • Public DB hit
      GI:125664389
      CY019656
    • Hit length
      2,268 bp
    • E Value
      0E0
    • BLAST Score
      3,269.7 bits
    • Similarity
      92.71%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 3
      98.4% cov
      CY019656
      99.96% cov
    • Alignment Length
      2,276 bp
    • CIGAR string
      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 mismatches: 151 - insertions: 6 - deletions: 9
  • Influenza B virus (B/Yamagata/16/1988)

    Influenza B virus (B/Yamagata/16/1988)

    • Public DB hit
      GI:119516712
      CY018770
    • Hit length
      2,273 bp
    • E Value
      0E0
    • BLAST Score
      3,267.8 bits
    • Similarity
      92.66%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 3
      98.4% cov
      CY018770
      99.91% cov
    • Alignment Length
      2,276 bp
    • CIGAR string
      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 mismatches: 156 - insertions: 6 - deletions: 5
  • Influenza B virus (B/New York/39/1991)

    Influenza B virus (B/New York/39/1991)

    • Public DB hit
      GI:125664370
      CY019648
    • Hit length
      2,262 bp
    • E Value
      0E0
    • BLAST Score
      3,264.2 bits
    • Similarity
      92.73%
    • Coverage
      98.14%
    • Alignment (schematic)

      SEQ ID NO 3
      98.14% cov
      CY019648
      99.96% cov
    • Alignment Length
      2,269 bp
    • CIGAR string
      21H6MN18MD3MI2MN68MN6MNMN23MN5MN17MN5MN8MN2MN8MN32MN5MN11MN8MN35MN14MN25MN12MN2MN26MN5MN3MN7MN39MN4MN29MN11MN9MN7MN17MN41MN6MN22MN5MN8M2N7MN11MN22MN3MN29MN11MN5MN2MN11MN58M2N29MN5MN56MN2MN11MN35MN11MN5MN2MN13MN3MN11MN20MN33MN6M3NMN20MN5MN10MNI2MD6MN42MN10MN35MN4MN9MN2MN5MD3MI2MN2MN23M2N14MN4MN17MN2MN5MN2MN17MN68MN26MN20MN14MN2MN26MN5MN5MN7MN6MN5MD3MI26MN2MN9MN2MN4MN2MN2MN26MN17MN35MN4M2N23MN2MN6MN28MN5MN2MN62MN11MN20MN5MN32MN4M2N26MN5MN14MN29MN17MN17MN23MN26MN8MN5MN3MN10MN2MN17MN11MN17MN29MN15MN7MN2MN2MN8MN9MN21MN2M2D3M2D5M2N8MN23MN16MI4MN6M22H mismatches: 152 - insertions: 5 - deletions: 8
  • Influenza B virus (B/Norway/1/84)

    Influenza B virus (B/Norway/1/84)

    • Public DB hit
      GI:6318422
      AF102019
    • Hit length
      2,204 bp
    • E Value
      0E0
    • BLAST Score
      3,262.3 bits
    • Similarity
      93.38%
    • Coverage
      95.54%
    • Alignment (schematic)

      SEQ ID NO 3
      95.54% cov
      AF102019
      100% cov
    • Alignment Length
      2,205 bp
    • CIGAR string
      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 mismatches: 144 - insertions: 1 - deletions: 1
  • Influenza B virus (B/Hong Kong/22/1989)

    Influenza B virus (B/Hong Kong/22/1989)

    • Public DB hit
      GI:119516731
      CY018778
    • Hit length
      2,269 bp
    • E Value
      0E0
    • BLAST Score
      3,253.1 bits
    • Similarity
      92.57%
    • Coverage
      98.4%
    • Alignment (schematic)

      SEQ ID NO 3
      98.4% cov
      CY018778
      99.91% cov
    • Alignment Length
      2,275 bp
    • CIGAR string
      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 mismatches: 156 - insertions: 5 - deletions: 8
  • Influenza B virus (B/Memphis/3/89)

    Influenza B virus (B/Memphis/3/89)

    • Public DB hit
      GI:53829852
      AY582032
    • Hit length
      2,181 bp
    • E Value
      0E0
    • BLAST Score
      3,253.1 bits
    • Similarity
      93.59%
    • Coverage
      94.54%
    • Alignment (schematic)

      SEQ ID NO 3
      94.54% cov
      AY582032
      100% cov
    • Alignment Length
      2,184 bp
    • CIGAR string
      29H17MD3MI2MN68MN6MNMN53MN11MN8MN32MN5MN11MN8MN77MN14MN2MN23MN5MN3MN7MN11MN27MN4MN29MN11MN9MN7MN17MN5MN17MN17MN29MN5MN8MN20MN26MN41MN5MN2MN11MN5MN53MN5MN23MN5MN56MN2MN11MN26MI3MD14MNMN6MN2MN13MNMNMN11MN20MN23MN9MN6MNMNMN17MN8MN12MNMN11MN23MN12MN10MN29MN5MN26MN2MN23MN2M2N19MN5MN23MN17MN8MN50MN8MN45MNMN14MN2MN26MN11MN7MN6MN2MN2MN29MN12MN2MN4MN2MN2MN26MN17MN11MN23MN4MN6MN3MN13MN9MN34MN20MN44MN11MN17MD3MI5MN17MN17MNM2N20MN11MN14MN29MN35MN11MN8MN29MN14MN14MN2MN17MN6MN22MN45MN10MN2MN8MN33M97H mismatches: 134 - insertions: 3 - deletions: 3
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
4
Length
1,882
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Influenza virus B/Lee/40
Determined organism
  • Influenza B virus

    Influenza B virus

    • Public DB hit
      GI:325175
      K00423
      1 of 9 hits reported for Influenza B virus.
    • Hit length
      1,882 bp
    • E Value
      0E0
    • BLAST Score
      3,404.5 bits
    • Similarity
      99.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      K00423
      100% cov
    • Alignment Length
      1,882 bp
    • CIGAR string
      188MNMN85MNMN25MN3MN37MN169MN60MN698MN183MN32MN227MN160M mismatches: 13 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Lee/40)

    Influenza B virus (B/Lee/40)

    • Public DB hit
      GI:110676604
      DQ792897
      1 of 2 hits reported for Influenza B virus (B/Lee/40).
    • Hit length
      1,840 bp
    • E Value
      0E0
    • BLAST Score
      3,332.5 bits
    • Similarity
      99.35%
    • Coverage
      97.77%
    • Alignment (schematic)

      SEQ ID NO 4
      97.77% cov
      DQ792897
      100% cov
    • Alignment Length
      1,840 bp
    • CIGAR string
      20H168MN92MN174MN59MN5MN54MN214MN274MN262MN129MN196MN134MN67M22H mismatches: 12 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Russia/69)

    Influenza B virus (B/Russia/69)

    • Public DB hit
      GI:148509298
      EF626636
    • Hit length
      1,882 bp
    • E Value
      0E0
    • BLAST Score
      2,983.5 bits
    • Similarity
      95.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EF626636
      100% cov
    • Alignment Length
      1,885 bp
    • CIGAR string
      9MIMDN59MN44MN8MN8MN17MN20MN14MNMN39MN18MNMN38MN2MNMN5MN9MN8MN11MN23MN68MN15MN4MN9MN4MN22MIMD2MN2MN26MN8MN2MN6MI2MD13MNMN8MN4MN5MNMN5M2N6MN26MN2MN4MN39MN12MN2MN15MN2MN125MN2MN29MN11M2N97MN14MN26MN8MN92MN107MN14MN35MN5MN20MN24MN4MN2MN3MN16MN2MN2MN2MN68MN26MN50MN11MN5MN30MN37MN29MN29MN83MN43MN5MN23MN65M mismatches: 83 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Bonn/43)

    Influenza B virus (B/Bonn/43)

    • Public DB hit
      GI:60738
      X13550
    • Hit length
      1,822 bp
    • E Value
      0E0
    • BLAST Score
      2,944.7 bits
    • Similarity
      95.8%
    • Coverage
      97.18%
    • Alignment (schematic)

      SEQ ID NO 4
      97.18% cov
      X13550
      100% cov
    • Alignment Length
      1,835 bp
    • CIGAR string
      53H60MN2MN8MN17MN29MN14MN5MN56MN5MN53MN8MN3MN100MN20MN7MNMN10MN18MNMN2MN8MN25MN7MI2MN2MD13MIMIMD3MN4MD4MD3M5D6MN33MN2MN41MDMIMN12MN41MN60MN9MN34MN2MN9MD6MI25MN128MN65MN53MN32MN16MDMI95MN32MN19MN4MN3MN7MN22MN2MN95MN50MN11MN5MN48MN9MN9MN14MN44MN11MN156MN24MD29M mismatches: 58 - insertions: 6 - deletions: 13
  • Influenza B virus (B/Singapore/222/79)

    Influenza B virus (B/Singapore/222/79)

    • Public DB hit
      GI:60779
      X00897
    • Hit length
      1,878 bp
    • E Value
      0E0
    • BLAST Score
      2,791.4 bits
    • Similarity
      93.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      X00897
      100% cov
    • Alignment Length
      1,888 bp
    • CIGAR string
      9MIMDN92MN11MN8MN5MN2MN38MN11MN2MNMN28MN10MN18MNMN38MN2MN7MN9MN7MDMI11MN23MN38MN5MN23MN15MN4MN8M2N4MNMN20MIMDNMN2MN26MN5MN5MN6MDNMI13MNMN14MDMD2MDMN5M2N6MN26MN2MN4MN29MN6MDMIMN12MI3MD18MN85MN3MN3M2N33MN29MN11M2N97MN14MN26MN8MN68MN23MN32MN89MN8MN26MN5MN17MN2MN17MN2MN3MN4MN2MN3MN16MN2MN2MN14MN20MN35MN26MN20MN29MN11MN5MN14MN11MN3MN37MN14MN9MN4MN29MN47MN29MN5MN2MN26MN11MNMN3MN14MN10MN9M2N9MN11MD32M mismatches: 107 - insertions: 6 - deletions: 10
  • Influenza B virus (B/Oregon/5/80)

    Influenza B virus (B/Oregon/5/80)

    • Public DB hit
      GI:325146
      K02713
    • Hit length
      1,878 bp
    • E Value
      0E0
    • BLAST Score
      2,774.8 bits
    • Similarity
      93.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      K02713
      100% cov
    • Alignment Length
      1,887 bp
    • CIGAR string
      9MIMDN92MN11MN8MN5MN2MN17MN20MN11MN2MNMN28MN10MN18MNMN38MN2MN7MN9MN7MDMI11MN23MN38MN5MN23MN15MN4MN8M2N4MNMN20MIMDNMN2MN8MN17MN5MN5MN6MDNMI13MNMN14MDMD2MDMN5M2N6MN26MN2MN4MN29MN6MN2MN2MN9MI3MD18MN85MN7M2N33MN29MN11M2N10MN86MN14MN26MN8MN68MN23MN122MN8MN26MN5MN17MN2MN17MN2MN3MN4MN2MN3MN16MN2MN2MN14MN20MN35MN26MN5MN14MN29MN11MN5MN14MN11MN3MN37MN14MN9MN4MN29MN47MN29MN5MN2MN26MN11MNMN3MNMN12MN10MN9M2N9MN11MD32M mismatches: 112 - insertions: 5 - deletions: 9
  • Influenza B virus (B/Beijing/1/1987)

    Influenza B virus (B/Beijing/1/1987)

    • Public DB hit
      GI:307777676
      X53098
    • Hit length
      1,871 bp
    • E Value
      0E0
    • BLAST Score
      2,649.2 bits
    • Similarity
      92.17%
    • Coverage
      99.31%
    • Alignment (schematic)

      SEQ ID NO 4
      99.31% cov
      X53098
      100% cov
    • Alignment Length
      1,877 bp
    • CIGAR string
      12H15M5N48MN23MN11MN8MN8MN38MN11MN2MNMN28MNMN8MN14MN3MNMN38MN10MN9MN7MDMI11MN23MN32MN5MN5MN17MN3MNMN13MI3MD3MN8M2N4MN23MN2MN2MN8MN17MN5MN5MN6MDNMI13MNMN4M2I4MI11MNMN5MN7MN26MN7MN36MN2MN2MN9MI3MD18MN5MN20MN5MN11MN5MN24MN7MNMN7M2N9MN23MN6MN20M3N2MN8MN74MN3MDMI18MN38MN2MN8MN68MN23MN77MN17MN26MN8MN26MN5MN8MN8MN2MN17MN2MN3MN4MN2MN3MN13MN2MN2MN2MN14MN20MN35MN26MN5MN44MN11MN5MN14MN11MN5MN5MN29MN8MN5MN9MN4MN29MN23MN20MN2MN29MN5MN2MN26MN11MNMN3MNMN12MN10MN9M2N9MN11MD31M1H mismatches: 133 - insertions: 8 - deletions: 6
  • Influenza B virus (B/USSR/100/83)

    Influenza B virus (B/USSR/100/83)

    • Public DB hit
      GI:60728
      X13552
    • Hit length
      1,825 bp
    • E Value
      0E0
    • BLAST Score
      2,649.2 bits
    • Similarity
      92.85%
    • Coverage
      97.18%
    • Alignment (schematic)

      SEQ ID NO 4
      97.18% cov
      X13552
      100% cov
    • Alignment Length
      1,833 bp
    • CIGAR string
      53H21MN29MN8MN2MN8MN5MN2MN14MN23MN11MN2MNMN28MN10MN18MNMN38MN2MN7MN9MN7MDMI11MN23MN38MN5MN23MN15MN4MN8M2N4MNMN20MIMDNMN2MN26MN5MN5MN6MDNMI13MNMN14MDMD2MDMN5M3N5MN5MN20MN2MN4MN29MN6MN6MN8MI3MD18MN62MN22MN7M2N33MN2MN12MN13MN11M2N97MN14MN26MN8MN68MN23MN122MN8MN26MN5MN17MN2MN17MN2MN3MN4MN2MN3MNMN14MN2MN2MN14MN8MN11MN35MN5MN20MN20MN29MN11MN5MN14MN11MN3MN37MN8MN5MN9MN4MN29MN23MN23MN29MN5MN2MN26MN11MNMN3MNMN12MN10MN9M2N9MN11MD32M mismatches: 119 - insertions: 4 - deletions: 8
  • Influenza B virus (B/Hong Kong/05/1972)

    Influenza B virus (B/Hong Kong/05/1972)

    • Public DB hit
      GI:94481541
      DQ508921
    • Hit length
      1,749 bp
    • E Value
      0E0
    • BLAST Score
      2,636.3 bits
    • Similarity
      93.9%
    • Coverage
      93.04%
    • Alignment (schematic)

      SEQ ID NO 4
      93.04% cov
      DQ508921
      99.77% cov
    • Alignment Length
      1,755 bp
    • CIGAR string
      33H83MN8MN8MN38MN14MNMN39MN18MNMN38MN2MN7MN9MN7MDMI11MN23MN38MN5MN23MN12MN2MN4MN9MN4MN22MIMD2MN2MNMN24MN5MN5MN6MDNMI13MNMN4MD3MDMD3MDMD2MDMN5M2N6MN26MN2MN4MN29MN6MN2MN3MN8MI3MD18MN26MN48MN17M2N33MN28M2N11M2N97MN14MN26MN8MN68MN23MN83MN11MN26MN8MN26MN23MN2MN17MN2MN3MN4MN2MN3MN16MN2MN2MN14MN20MN35MN26MN50MN11MN5MN23MN44MN14MN9MN4MN29MN47MN29MN5MN2MN26MN11M98H mismatches: 93 - insertions: 4 - deletions: 10
  • Influenza B virus (B/Texas/37/1988)

    Influenza B virus (B/Texas/37/1988)

    • Public DB hit
      GI:125663271
      CY019603
    • Hit length
      1,847 bp
    • E Value
      0E0
    • BLAST Score
      2,628.9 bits
    • Similarity
      92.39%
    • Coverage
      98.03%
    • Alignment (schematic)

      SEQ ID NO 4
      98.03% cov
      CY019603
      100% cov
    • Alignment Length
      1,852 bp
    • CIGAR string
      17H63MN35MN8MN8MN29MN8MN11MN2MNMN28MNMN8MN14MN3MNMN38MN10MN9MN7MDMI11MN23MN32MN5MN5MN17MN5MN13MI3MDN2MN8M2N4MN23M2NMN2MN21MN4MN5MN5MN6MDNMI13MNMN4M2I4MI11MNMN5MN7MN26MN7MN36MN2MN12MI3MD18MN5MN20MN5MN3MN7MN5MN24MN9MN7M2N9MN23MN2MN3MN20M3N2MN8MN74MN23MN14MN23MN11MN68MN23MN77MN17MN20MN5MN8MN20MN5MN5MN17MN2MN17MN2MN3MN4MN2MN3MN13MN2MN2MN2MN14MN20MN35MN26MN5MN44MN11MN5MN14MN11MN5MN5MN29MN14MN9MN4MN29MN23MN20MN2MN29MN5MN2MN26MN11MNMN3MNMN12MN10MN9M2N9MN11MD12M20H mismatches: 129 - insertions: 7 - deletions: 5
  • Influenza B virus (B/Yamagata/16/1988)

    Influenza B virus (B/Yamagata/16/1988)

    • Public DB hit
      GI:119516699
      CY018765
    • Hit length
      1,843 bp
    • E Value
      0E0
    • BLAST Score
      2,614.1 bits
    • Similarity
      92.27%
    • Coverage
      98.09%
    • Alignment (schematic)

      SEQ ID NO 4
      98.09% cov
      CY018765
      100% cov
    • Alignment Length
      1,851 bp
    • CIGAR string
      16H58MN29MN20MN5MN2MN14MN23MN11MN2MNMN28MN10MN18MNMN17MN19M2N2MN7MN9MN7MDMI11MN7MN12MN2MN38MN5MN23MN5MN7MI3MD3MN8M2N4MNMN19MD2MINMN2MN26MNMNMNMN5MN6MDNMI13MNMN6M2N6MDMD2MDMN5M2N6MN25M2N2MN4MN29MN20MD4MNMI79MN23MN7M2N33MN11MN17MN11M2N4MN11MN71MN8MN14MN26MN8MN35MN8MN23MN23MN29MN2MN86MN2MN8MN26MN5MN17MN2MN14MN2MN2MN3MN4MN2MN3MN16MN2MN2MN14MN8MN11MN35MN26MN11MN8MN14MN14MN11MN5MN14MN11MN3MN37MN24MNMN2MN29MN47MN5MN20MN2MN5MN2MN26MN11MNMN3MNMN12MN10MN9M2N9MN24M20H mismatches: 130 - insertions: 5 - deletions: 8
  • Influenza B virus (B/Victoria/02/1987)

    Influenza B virus (B/Victoria/02/1987)

    • Public DB hit
      GI:119516680
      CY018757
    • Hit length
      1,843 bp
    • E Value
      0E0
    • BLAST Score
      2,603 bits
    • Similarity
      92.21%
    • Coverage
      97.77%
    • Alignment (schematic)

      SEQ ID NO 4
      97.77% cov
      CY018757
      100% cov
    • Alignment Length
      1,848 bp
    • CIGAR string
      22H94MN8MN8MN38MN11MN2MNMN28MNMN8MN14MN3MNMN38MN4MN5MN9MN7MD2MI10MN23MN32MN5MN5MN17MN3MNMN15MIMD3MN8M2N4MN23MN2MN2MN8MN17MN5MN5MN6MND2MI12MNMN8M3I11MNMN5MN7MN26MN7MN36MN2MN2MN9MI3MD18MN5MN20MN5MN11MN5MN24MN9MN7M2N9MN23MN6MN20M3N2MN8MN74MN23MN14MN23MN2MN8MN68MN22MD3MI27MN47MN17MN26MN8MN26MN5MN8MN8MN2MN17MN2MN3MN4MN2MN3MN2MN10MN2MN2MN2MN14MN20MN11MN23MN26MN5MN44MN11MN5MN14MN11MN5MN5MN29MN8MN5MN9MN4MN29MN23MN20MN2MN29MN5MN2MN26MN11MNMN3MNMN12MN10MN3MN5M2N9MN11MN12M20H mismatches: 131 - insertions: 8 - deletions: 5
  • Influenza B virus (B/Switzerland/4291/97)

    Influenza B virus (B/Switzerland/4291/97)

    • Public DB hit
      GI:14587112
      AF387505
      1 of 2 hits reported for Influenza B virus (B/Switzerland/4291/97).
    • Hit length
      1,882 bp
    • E Value
      0E0
    • BLAST Score
      2,595.7 bits
    • Similarity
      91.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AF387505
      100% cov
    • Alignment Length
      1,889 bp
    • CIGAR string
      9MIMDN113MN5MN2MN11MN26MN11MN2MNMN28MN10MN13MN4MNMN17MN19M2N2M2N6MN2MN6MN7MD2MI7MN2MN7MN6MN5MN41MN5MN23MN5MN9MI2MD2MN8M2N4MNMN20MIM2N3MND22MN3MNMNMNMD2MI3MN2MN3MND2MI12MNMN6M2N11MNMN5M2N2MN3MN22MN3MN2MN3M2N29MN6MN14MN3MD2MI40MN35MN8M2N15MN7M2N33MN11MN17MN11MN5MN11MN11MN14MN44MN8MN14MN26MN8MN35MN8MN23MN23MN29MN50MN41MN8MN26MN5MN17MN2MN14MN2MN2MN3MN4MN2MN3MN16MN2MN2MN14MN8MN20MN26MN26MN11MN8MN14MN14MN11MN5MN14MN11MN3MN32MN4MN24MNMN2MN29MN8MN14MN23MN26MN2MN5MN2MN3MN22MN11MNMN3MNMN12MN10MN9M2N9MNMN42M mismatches: 145 - insertions: 7 - deletions: 7
  • Influenza B virus (B/Hong Kong/147/99)

    Influenza B virus (B/Hong Kong/147/99)

    • Public DB hit
      GI:14587099
      AF387499
      1 of 2 hits reported for Influenza B virus (B/Hong Kong/147/99).
    • Hit length
      1,882 bp
    • E Value
      0E0
    • BLAST Score
      2,595.7 bits
    • Similarity
      91.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AF387499
      100% cov
    • Alignment Length
      1,889 bp
    • CIGAR string
      9MIMDN113MN5MN2MN11MN26MN11MN2MNMN28MN10MN13MN3M2NMN17MN8MN5MN4M2N2M2N6MN2MN6MN7MD2MI10MN7MN12MN41MN5MN23MN5MN9MIMND2MN8MNMN3MNMN20MIM2N3MND22MN3MNMNMNMD2MI3MN2MN3MND2MI12MNMN6M2N11MNMN5M2N6MN17MN4MN3MN2MN3M2N29MN6MN14MN3MD2MI40MN35MN5MN2M2N15MN7M2N33MN11MN17MN11MN5MN11MN11MN14MN35MN8MN8MN14MN26MN8MN35MN8MN23MN23MN29MN92MN8MN26MN5MN17MN2MN14MN2MN2MN3MN4MN2MN3MN16MN2MN2MN14MN8MN20MN5MN20MN26MN11MN8MN14MN14MN11MN5MN26MN3MN37MN24MNMN2MN29MN8MN38MN26MN2MN5MN2MN3MN22MN11MNMN5MN12MN10MN9M2N9MNMN42M mismatches: 145 - insertions: 7 - deletions: 7
Occurrence
11 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,557
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Influenza virus B/Lee/40
Determined organism
  • Influenza B virus

    Influenza B virus

    • Public DB hit
      GI:325235
      J02095
      1 of 9 hits reported for Influenza B virus.
    • Hit length
      1,557 bp
    • E Value
      0E0
    • BLAST Score
      2,859.7 bits
    • Similarity
      99.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      J02095
      100% cov
    • Alignment Length
      1,557 bp
    • CIGAR string
      1021MN86MN16MN431M mismatches: 3 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Lee/40)

    Influenza B virus (B/Lee/40)

    • Public DB hit
      GI:110676608
      DQ792899
      1 of 2 hits reported for Influenza B virus (B/Lee/40).
    • Hit length
      1,536 bp
    • E Value
      0E0
    • BLAST Score
      2,782.2 bits
    • Similarity
      99.35%
    • Coverage
      98.65%
    • Alignment (schematic)

      SEQ ID NO 5
      98.65% cov
      DQ792899
      100% cov
    • Alignment Length
      1,537 bp
    • CIGAR string
      11H314MN146MN9MN376MN161MN60MD3MI39MN229MN80MN110M10H mismatches: 8 - insertions: 1 - deletions: 1
  • Influenza B virus (B/Hong Kong/05/1972)

    Influenza B virus (B/Hong Kong/05/1972)

    • Public DB hit
      GI:94481612
      DQ508923
    • Hit length
      1,408 bp
    • E Value
      0E0
    • BLAST Score
      2,556.9 bits
    • Similarity
      99.43%
    • Coverage
      90.43%
    • Alignment (schematic)

      SEQ ID NO 5
      90.43% cov
      DQ508923
      100% cov
    • Alignment Length
      1,409 bp
    • CIGAR string
      46H436MN376MN161MN60MD3MI39MN229MN80MN17M103H mismatches: 6 - insertions: 1 - deletions: 1
  • Influenza B virus (B/Russia/69)

    Influenza B virus (B/Russia/69)

    • Public DB hit
      GI:148509303
      EF626638
    • Hit length
      1,557 bp
    • E Value
      0E0
    • BLAST Score
      2,339 bits
    • Similarity
      93.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EF626638
      100% cov
    • Alignment Length
      1,561 bp
    • CIGAR string
      16MN6MN8M2N2MN31MN7MN11MN17MN23MN3MN23MN4MN12MN9MN21MN2MN3MNMN4MN8M2N3MN9MN26M2NMN57MN32MNMN2MN27MN5MN20MN20MN17MN2MN50MDMIMN11MN2MN14MN32MN2MN47MN7MNMN5MN2MN37MN12MN67MN2MN42MN26MN16MN5MN8MN50MN44MN33MN8MN7MN8MN15MN22MN5MIMD42MN43MI2MD23MN11MN20MN2MN3MN3MN18MN2MD3MI35MN2MN17MN38MN8MN5MN38MN20MN12MNMN4MN12MN29MN8MN4MN6MN37M mismatches: 89 - insertions: 4 - deletions: 4
  • Influenza B virus (B/Singapore/222/79)

    Influenza B virus (B/Singapore/222/79)

    • Public DB hit
      GI:325226
      M30637
    • Hit length
      1,527 bp
    • E Value
      0E0
    • BLAST Score
      2,270.7 bits
    • Similarity
      93.64%
    • Coverage
      97.62%
    • Alignment (schematic)

      SEQ ID NO 5
      97.62% cov
      M30637
      99.54% cov
    • Alignment Length
      1,526 bp
    • CIGAR string
      37H31MN7MN11MN17MN23MN3MN11MN11MN17MN9MN21MN2MN3MNMN4MN8M2N3MN9MN26M2NMN6MN50MN23MN7MI2MDN2MN27MN9MN16MN7MN12MN20MN50MDMIMN11MN2MN14MN32MN2MN47MN7MNMN8MN37MN12MN67MN2MN38MN3MN26MN16MN5MN8MN11MN2MN35MN44MN33MN8MN7MN8MN15MN22MN5MIMD13MD5MI23MN3MN39MI2MD23MN11MN20MN2MN3MN3MN15MN2MN2MD3MI35MN2MN17MN38MN8MN5MN41MN17MN19MN42MN8MN4MN44M mismatches: 85 - insertions: 6 - deletions: 6
  • Influenza B virus (B/USSR/100/83)

    Influenza B virus (B/USSR/100/83)

    • Public DB hit
      GI:325229
      M30638
    • Hit length
      1,527 bp
    • E Value
      0E0
    • BLAST Score
      2,193.1 bits
    • Similarity
      92.72%
    • Coverage
      97.62%
    • Alignment (schematic)

      SEQ ID NO 5
      97.62% cov
      M30638
      99.54% cov
    • Alignment Length
      1,525 bp
    • CIGAR string
      37H30M2N7MN11MN17MN23MN3MN11MN11MN17MN9MN8MN12MN2MN3MNMN13M2N3MN36M2NMN6MN50MN23MN8MDMNMNMI27MN9MN16MN2MN4MN12MN17MN2MN24MN25MIMNMD11MN2MN14MN32MN2MN47MN7MNMN8MN37MN12MN40MN26MN2MN38MN3MN26MN16MN5MN8MN11MN2MN35MN44MN2MN30MN8MN7MN8MN15MN22MN5MIMD3MN6MN5MN25MN3MN39MI2MD23MN11MN20MN2MN3MNMNMN15MN2MN2MD3MI35MN2MN17MN36MNMN8MN5MN20MN38MN12MNMN4MN12MN29MN8MNMN2MN6MN2MN34M mismatches: 101 - insertions: 5 - deletions: 5
  • Influenza B virus (B/Beijing/1/1987)

    Influenza B virus (B/Beijing/1/1987)

    • Public DB hit
      GI:307603360
      M54967
    • Hit length
      1,553 bp
    • E Value
      0E0
    • BLAST Score
      2,182 bits
    • Similarity
      92.6%
    • Coverage
      97.75%
    • Alignment (schematic)

      SEQ ID NO 5
      97.75% cov
      M54967
      97.81% cov
    • Alignment Length
      1,527 bp
    • CIGAR string
      34H34MN7MN11MN17MN23MN3MN11MN11MN18M3D6MN16MN4MN2MN3MNMN13M2N3MN9M2N25M2NMN6MN50MN23MN7MI2MDN2MN18MN8MN9MN16MN7MN12MN17MN5MI3MD18MN25MDMIMN11MN2MN14MN32MN2MN2MN44MN7MNMN8MN37MN12MN67MN2MN38MN3MN26MN16MN5MN8MN11MN2MN35MN44MN14MN18MN8MN7MN8MN15MN22MN5MIMD3MN12MN25MN3MN39MNMN23MNMN9MN20MN2MN3MN3MN15MN2MN2MD3MI35MN2MN17MN36MNMN8MN5MN41MN17MN12MNMN4MN12MN29MN8MN4MN6MN2MN33M1H mismatches: 100 - insertions: 5 - deletions: 8
  • Influenza B virus (B/Victoria/02/1987)

    Influenza B virus (B/Victoria/02/1987)

    • Public DB hit
      GI:119516685
      CY018759
    • Hit length
      1,521 bp
    • E Value
      0E0
    • BLAST Score
      2,172.8 bits
    • Similarity
      92.57%
    • Coverage
      97.3%
    • Alignment (schematic)

      SEQ ID NO 5
      97.3% cov
      CY018759
      99.61% cov
    • Alignment Length
      1,520 bp
    • CIGAR string
      24H8M2N2MN31MN7MN11MN17MN25MNMN11MN11MN17MN9MN2MN18MN2MN3MNMN13M2N3MN3MN32M2NMN6MN5MN44MN23MN7MI2MDN30MN9MN16MN2MN4MN12MN17MN2MN24MN25MDMIMN8MN2MN2MN14MN32MN50MN7MNMN8MN25MN11MN12MN67MN2MN38MN3MN26MN16MN5MN8MN11MN2MN35MN44MN33MN8MN7MN8MN15MN22MN2MN2MIMD3MN6MN5MN25MN3MN39MI2MD23MN11MN20MN2MN3MN3MN15MN2MN2MD3MI20MN14MN2MN17MN36MNMN8MN5MN20MN14MN23MN14MN4MN12MN29MN8MN4MN6MN2MN16M18H mismatches: 103 - insertions: 5 - deletions: 5
  • Influenza B virus (B/Shangdong/7/97)

    Influenza B virus (B/Shangdong/7/97)

    • Public DB hit
      GI:20126599
      AY044172
    • Hit length
      1,536 bp
    • E Value
      0E0
    • BLAST Score
      2,154.3 bits
    • Similarity
      92.05%
    • Coverage
      98.39%
    • Alignment (schematic)

      SEQ ID NO 5
      98.39% cov
      AY044172
      99.74% cov
    • Alignment Length
      1,535 bp
    • CIGAR string
      24H8M2N2MN31MN7MN11MN20MN22MNMN11MN11MN17MN8M2N2MN18MN2MN3MNMN13M2N3MN7MN12MN15M2NMN6MN35MN14MN23MN2MN4MI2MDN30MN5MN3MN16MN2MN2MNMN12MN17MN2MN23M2N25MDMIMN8MN2MN2MN14MN32MN32MN17MN7MNMN8MN25MN11MN12MN67MN2MN22MN9MN5MN3MN26MN16MN5MN8MN11MN2MN35MN78MN8MN7MN8MN15MN22MN5MIMD2M2N6MN5MN25MN3MNMN18MN20MN23MN11MN20MN2MN3MN3MN15MN2MN26MN2MN11MN2MN8MN8MN36MNMN8MN5MN20MN14MN23MN12MNMN4MN12MN38MN4MN6MN2MN33M1H mismatches: 116 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Alaska/03/1992)

    Influenza B virus (B/Alaska/03/1992)

    • Public DB hit
      GI:125663352
      CY019661
    • Hit length
      1,513 bp
    • E Value
      0E0
    • BLAST Score
      2,152.5 bits
    • Similarity
      92.36%
    • Coverage
      97.3%
    • Alignment (schematic)

      SEQ ID NO 5
      97.3% cov
      CY019661
      99.93% cov
    • Alignment Length
      1,518 bp
    • CIGAR string
      24H8M2N2MN31MN7MN11MN17MN25MNMN11MN29MDM2D6MN2MN15MN2MN2MN3MNMN13M2N3MN20MN15M2NMN6MN50MN23MN7MI2MDN30MN9MN16MN2MN4MN12MN17MN2MN24MN25MDMIMN8MN2MN2MN14MN32MN50MN7MNMN8MN25MN8MN2MN12MN67MN2MN32MN5MN3MN26MN16MN5MN8MN11MN2MN35MN41MN2MN33MN8MN7MN8MN15MN22MN5MIMD3MN6MN31MN3MN41MN23MN11MN20MN2MN3MN3MN15MN2MN2MN23MN14MN2MN2MN14MN23MN12MNMN8MN5MN20MN14MN23MN12MNMN4MN12MN14MN23MN4MN6MN2MN16M18H mismatches: 107 - insertions: 3 - deletions: 6
  • Influenza B virus (B/Texas/37/1988)

    Influenza B virus (B/Texas/37/1988)

    • Public DB hit
      GI:125663276
      CY019605
    • Hit length
      1,518 bp
    • E Value
      0E0
    • BLAST Score
      2,152.5 bits
    • Similarity
      92.36%
    • Coverage
      97.3%
    • Alignment (schematic)

      SEQ ID NO 5
      97.3% cov
      CY019605
      99.6% cov
    • Alignment Length
      1,519 bp
    • CIGAR string
      24H8M2N2MN31MN7MN11MN17MN23MN3MN11MN11MN9MN8M3D6MN16MN4MN2MN3MNMN13M2N3MN9MN26M2NMN6MN50MN23MN7MI2MDN2MN18MN8MN9MN16MN7MN12MN17MN2MN24MN25MDMIMN11MN2MN14MN32MN2MN20MN26MN7MNMN8MN37MN12MN67MN2MN21MN16MN3MN26MN16MN14MN11MN2MN35MN44MN14MN6MN11MN8MN7MN8MN8MN6MN17MN4MN5MIMD3MN12MN11MN13MN3MN39MNMN23MN11MN23MN3MN3MN15MN2MN2MD3MI35MN2MN17MN36MNMN8MN5MN59MN12MNMN4MN12MN29MN8MN4MN6MN2MN16M18H mismatches: 105 - insertions: 4 - deletions: 7
  • Influenza B virus (B/Hong Kong/22/1989)

    Influenza B virus (B/Hong Kong/22/1989)

    • Public DB hit
      GI:119516723
      CY018775
    • Hit length
      1,516 bp
    • E Value
      0E0
    • BLAST Score
      2,150.6 bits
    • Similarity
      92.31%
    • Coverage
      97.3%
    • Alignment (schematic)

      SEQ ID NO 5
      97.3% cov
      CY018775
      99.93% cov
    • Alignment Length
      1,521 bp
    • CIGAR string
      24H6MNM2N2MN31MN7MN11MN17MN23MN3MN11MN11MN17MN5MN3MN16MN4MN2MN2M2N15M2N3MN9MN14MN7MN3M2NMN6MN29MI3MD17MN23MN8MNMN2MN27MN9MN16MN7MN12MN17MN2MN24MN25MDMIMN14MN5MN5MN2MN35MN47MN7MNMN8MN37MN12MN40MN26MN2MN38MN3MN26MN16MN2MN2MN8MN11MN2MN35MN44MN33MN8MN7MN8MN15MN22MN5MIMD3MN12MN11MN13MN3MN20MN18MI2MD23MN11MN20MN2MN3MN3MN18MN2MN38MN2MN17MN36MNMN8MN5MN20MN38MN12MNMN4MN12MIMD28MN8MN4MN6MD2MNI16M18H mismatches: 105 - insertions: 6 - deletions: 6
  • Influenza B virus (B/Yamagata/16/1988)

    Influenza B virus (B/Yamagata/16/1988)

    • Public DB hit
      GI:24061596
      AY139081
    • Hit length
      1,511 bp
    • E Value
      0E0
    • BLAST Score
      2,148.8 bits
    • Similarity
      92.35%
    • Coverage
      97.05%
    • Alignment (schematic)

      SEQ ID NO 5
      97.05% cov
      AY139081
      100% cov
    • Alignment Length
      1,517 bp
    • CIGAR string
      46H22MN7MN11MN17MN23MN3MN11MN11MN17MN5MN3MN11MD2MI2MN4MN2MN2M2N15M2N3MN9MN14MN7MN3M2NMNMN4MN50MN23MN8MNMN2MN27MN9MN16MN7MN12MN17MN2MN24MN25MDMIMN14MN11MN2MN35MN39MN7MN7MNMN8MN37MN12MN67MN2MN38MN3MN26MN4MN11MN2MN2MN8MN11MN2MN35MN44MN33MN8MN7MN8MN15MN22MN5MIMD3MN12MN11MN13MN3MN20MN18MI2MD23MN11MN20MN2MN3MN3MN18MN2MD3MI17MN17MN2MN17MN23MN14MN8MN5MN20MN38MN12MNMN4MN12MIMD28MN8MN4MN6MN2MN12MN21M mismatches: 104 - insertions: 6 - deletions: 6
  • Influenza B virus (B/Guangdong/5/94)

    Influenza B virus (B/Guangdong/5/94)

    • Public DB hit
      GI:24061588
      AY139079
    • Hit length
      1,511 bp
    • E Value
      0E0
    • BLAST Score
      2,148.8 bits
    • Similarity
      92.34%
    • Coverage
      97.05%
    • Alignment (schematic)

      SEQ ID NO 5
      97.05% cov
      AY139079
      100% cov
    • Alignment Length
      1,514 bp
    • CIGAR string
      46H22MN7MN11MN17MN2MN22MNMN11MN29MN9MN2MN15MN2MN2MN3MNMN13M2N3MN20MN15M2NMN6MN35MN14MN23MN7MI2MDN30MN9MN16MN2MN2MNMN12MN17MN2MN24MN25MDMIMN2MN5MN2MN2MN14MN32MN32MN17MN7MNMN8MN8MN16MN11MN12MN67MN2MN32MN5MN3MN26MN16MN5MN8MN11MN2MN35MN78MN8MN7MN8MN15MN22MN5MIMD2M2N6MN5MN25MN3MN20MN20MN23MN11MN20MN2MN3MN3MN15MN2MN2MN23MN14MN2MN8MN8MN36MNMN8MN5MN20MN14MN23MN12MNMN4MN12MN29MN8MN4MN6MN2MN34M mismatches: 110 - insertions: 3 - deletions: 3
  • Influenza B virus (B/Hong Kong/330/2001 egg adapted)

    Influenza B virus (B/Hong Kong/330/2001 egg adapted)

    • Public DB hit
      GI:50059434
      AY504620
    • Hit length
      1,556 bp
    • E Value
      0E0
    • BLAST Score
      2,148.8 bits
    • Similarity
      91.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY504620
      100% cov
    • Alignment Length
      1,561 bp
    • CIGAR string
      16MN4MNMN8M2N2MN5MD18MN6MN19MN17MN25MNMN11MN11MN17MN9MN2MN11MN3MN2MN2MNMNMNMN12M3N3MNMN34M2NMN6MN35MN11MN2MN23MN7MI2MDN30MN9MN16MN2MN2MNMN12MN17MN2MN24MN25MDMIMN8MN2MN2MN5MN8MN32MN2MN23MN5MN17MN7MNMN8MN25MN11MN12MN34MN32MN2MN32MN5MN3MN14MN11MN16MN5MN8MN11MN2MN35MN56MN21MN8MN7MN8MN15MN22MN5MIMD2M2N6MN5MN25MN3MN20MN20MN23MN11MN23MN3MN3MN15MN2MN26MN14MN2MN8MN8MN36MDMNMI7MN5MN20MN14MN15MN7MN12MNMN4MN12MN29MN8MN4MN6MN2MN34M mismatches: 122 - insertions: 4 - deletions: 5
  • Influenza B virus (B/Hong Kong/330/2001)

    Influenza B virus (B/Hong Kong/330/2001)

    • Public DB hit
      GI:28302104
      AY191502
    • Hit length
      1,555 bp
    • E Value
      0E0
    • BLAST Score
      2,148.8 bits
    • Similarity
      91.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY191502
      100% cov
    • Alignment Length
      1,561 bp
    • CIGAR string
      16MN4MNMN8MDN2MN5MD18MN6MN19MN17MN25MNMN11MN11MN17MN9MN2MN11MN3MN2MN2MNMNMNMN12M3N3MNMN34M2NMN6MN35MN11MN2MN23MN7MI2MDN30MN9MN16MN2MN2MNMN12MN17MN2MN24MN25MDMIMN8MN2MN2MN5MN8MN32MN2MN23MN5MN17MN7MNMN8MN25MN11MN12MN34MN32MN2MN32MN5MN3MN14MN11MN16MN5MN8MN11MN2MN35MN56MN21MN8MN7MN8MN15MN22MN5MIMD2M2N6MN5MN25MN3MN20MN20MN23MN11MN23MN3MN3MN15MN2MN26MN14MN2MN8MN8MN36MDMNMI7MN5MN20MN14MN15MN7MN12MNMN4MN12MN29MN8MN4MN6MN2MN34M mismatches: 121 - insertions: 4 - deletions: 6
Occurrence
11 times in PatSeqDB
Tools
SEQ ID NO
6
Length
1,841
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Influenza virus B/Lee/40
Determined organism
  • Influenza B virus

    Influenza B virus

    • Public DB hit
      GI:325110
      K01395
      1 of 4 hits reported for Influenza B virus.
    • Hit length
      1,841 bp
    • E Value
      0E0
    • BLAST Score
      3,332.5 bits
    • Similarity
      99.35%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 6
      99.95% cov
      K01395
      99.95% cov
    • Alignment Length
      1,841 bp
    • CIGAR string
      1H205MN30MN61MN80MN101MN16MN102MN94MN113MDMI116MN172MN738M mismatches: 10 - insertions: 1 - deletions: 1
  • Influenza B virus (B/Lee/40)

    Influenza B virus (B/Lee/40)

    • Public DB hit
      GI:110676606
      DQ792898
      1 of 2 hits reported for Influenza B virus (B/Lee/40).
    • Hit length
      1,812 bp
    • E Value
      0E0
    • BLAST Score
      3,280.8 bits
    • Similarity
      99.34%
    • Coverage
      98.42%
    • Alignment (schematic)

      SEQ ID NO 6
      98.42% cov
      DQ792898
      100% cov
    • Alignment Length
      1,812 bp
    • CIGAR string
      11H95MN130MN73MN170MN16MN102MN218MN59MN47MN90MN556MN109MN135M18H mismatches: 12 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    Influenza B virus (B/NYMC BX-5A(Lee/1940-Jilin/20/2003))

    • Public DB hit
      GI:194351606
      CY033823
    • Hit length
      1,806 bp
    • E Value
      0E0
    • BLAST Score
      3,264.2 bits
    • Similarity
      99.28%
    • Coverage
      98.1%
    • Alignment (schematic)

      SEQ ID NO 6
      98.1% cov
      CY033823
      100% cov
    • Alignment Length
      1,806 bp
    • CIGAR string
      17H89MN130MN73MN170MN16MN102MN218MN59MN47MN90MN310MN245MN109MN135M18H mismatches: 13 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-7(Lee/1940-Jiangsu/10/2003))

    Influenza B virus (B/NYMC BX-7(Lee/1940-Jiangsu/10/2003))

    • Public DB hit
      GI:194351644
      CY033839
    • Hit length
      1,801 bp
    • E Value
      0E0
    • BLAST Score
      3,254.9 bits
    • Similarity
      99.28%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 6
      97.83% cov
      CY033839
      100% cov
    • Alignment Length
      1,801 bp
    • CIGAR string
      21H85MN130MN73MN170MN16MN102MN218MN59MN47MN90MN310MN245MN109MN134M19H mismatches: 13 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-17(Lee/1940-Malaysia/2506/2004))

    Influenza B virus (B/NYMC BX-17(Lee/1940-Malaysia/2506/2004))

    • Public DB hit
      GI:194351720
      CY033871
    • Hit length
      1,794 bp
    • E Value
      0E0
    • BLAST Score
      3,242 bits
    • Similarity
      99.28%
    • Coverage
      97.45%
    • Alignment (schematic)

      SEQ ID NO 6
      97.45% cov
      CY033871
      100% cov
    • Alignment Length
      1,794 bp
    • CIGAR string
      22H84MN130MN73MN170MN16MN102MN218MN59MN47MN90MN310MN245MN109MN128M25H mismatches: 13 - insertions: 0 - deletions: 0
  • Influenza B virus (B/NYMC BX-15(Lee/1940-Hawaii/33/2004))

    Influenza B virus (B/NYMC BX-15(Lee/1940-Hawaii/33/2004))

    • Public DB hit
      GI:225676805
      CY038282
    • Hit length
      1,799 bp
    • E Value
      0E0
    • BLAST Score
      3,240.1 bits
    • Similarity
      99.17%
    • Coverage
      97.72%
    • Alignment (schematic)

      SEQ ID NO 6
      97.72% cov
      CY038282
      100% cov
    • Alignment Length
      1,799 bp
    • CIGAR string
      22H84MN130MN73MN170MN16MN102MN218MN59MN47MN90MN266MN43MN245MN109MN19MN113M20H mismatches: 15 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Hong Kong/8/1973)

    Influenza B virus (B/Hong Kong/8/1973)

    • Public DB hit
      GI:126361873
      EF456777
    • Hit length
      1,730 bp
    • E Value
      0E0
    • BLAST Score
      3,171.8 bits
    • Similarity
      99.77%
    • Coverage
      93.92%
    • Alignment (schematic)

      SEQ ID NO 6
      93.92% cov
      EF456777
      99.94% cov
    • Alignment Length
      1,729 bp
    • CIGAR string
      57H35MN164MN212MN1305MN9M55H mismatches: 4 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Hong Kong/05/1972)

    Influenza B virus (B/Hong Kong/05/1972)

    • Public DB hit
      GI:94483636
      DQ508922
    • Hit length
      1,683 bp
    • E Value
      0E0
    • BLAST Score
      3,042.6 bits
    • Similarity
      99.29%
    • Coverage
      91.42%
    • Alignment (schematic)

      SEQ ID NO 6
      91.42% cov
      DQ508922
      100% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      57H49MN130MN73MN170MN16MN102MN218MN59MN47MN90MN556MN109MN52M101H mismatches: 12 - insertions: 0 - deletions: 0
  • Influenza B virus (B/Russia/69)

    Influenza B virus (B/Russia/69)

    • Public DB hit
      GI:148509306
      EF626639
    • Hit length
      1,842 bp
    • E Value
      0E0
    • BLAST Score
      2,785.9 bits
    • Similarity
      93.98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EF626639
      100% cov
    • Alignment Length
      1,843 bp
    • CIGAR string
      26MN4MN2MN2MN2MIN37MNMN2MN2MN2MN8MN2MN15MNMN3MN13MN20MN14MN2MN23MN8MN6MN17MNM2N2MN9MN2MN18MN26MN5MN2MN44MN2MN11MN2MN2MN17MN8MN5MN11MN22MN11MN44MN3MN17MN43MN36MN2MN41MN8MN44MN5MN35MN11MN15MN13MN26MN8MN36MN11MD2MI56MN38MN2MN29MN9MN10MN8MN62MN6MNMN80M2NMN14MN3MN13MN23MN8MN2MN11MN5MN5MN8MN6MN4MN14MN2MN2MN2MN11MN35MN5MN5MN17MN12MN7MN29MN65M2N4MN35MN20MN10MN52M2N7MN88MN40MN54M mismatches: 108 - insertions: 2 - deletions: 1
  • Influenza B virus (B/Singapore/222/79)

    Influenza B virus (B/Singapore/222/79)

    • Public DB hit
      GI:325244
      K01139
    • Hit length
      1,838 bp
    • E Value
      0E0
    • BLAST Score
      2,660.3 bits
    • Similarity
      92.79%
    • Coverage
      99.95%
    • Alignment (schematic)

      SEQ ID NO 6
      99.95% cov
      K01139
      100% cov
    • Alignment Length
      1,845 bp
    • CIGAR string
      10MN15MN4MN2MNMIMNMIMN37MNMN2MN2MN2MN8MN2MN15MNMNMNMNMN30MD2MI14MN2MN20MN2MN8MN4MD2MI17MNM2N2MN12MN12MN5MN26MN5MN2MN44MN2MN11MN2MN2MN17MN8MN5MN11MN22MN3MN7MN44MN3MN17MN43MN36MN2MN20MN20MN8MN44MN5MN29MN5MN11MN15MN13MN35MN36MN13MN44MN11MN38MN2MN29MN8MIMD4MN5MN5MN2MN8MN53MN6MNMN80MN2MN14MN3MN13MN23MN8MN2MN6MN4MN5MN5MN15MN4MN14MN2MN2MN2MN8MN2MN35MN5MN5MN17MN12MN7MN11MN17MN65M2N4MN35MN11MN8MN10MN52M2N7MN88MN15MN6MN17MN20MD3MD3MDMN6MND14M1H mismatches: 121 - insertions: 5 - deletions: 7
  • Influenza B virus (B/Victoria/02/1987)

    Influenza B virus (B/Victoria/02/1987)

    • Public DB hit
      GI:119516688
      CY018760
    • Hit length
      1,803 bp
    • E Value
      0E0
    • BLAST Score
      2,586.4 bits
    • Similarity
      92.58%
    • Coverage
      97.83%
    • Alignment (schematic)

      SEQ ID NO 6
      97.83% cov
      CY018760
      100% cov
    • Alignment Length
      1,807 bp
    • CIGAR string
      21H5MN4MN2MN2MN2MIN7MI30MNMN2MN2M2NMN8MN2MN3MN9MI3MDN3MNMN30MD2MI14MN2MN14MN5MN2MN8MN6MN17MNM2N2MN9MI2MNMD17MN11MN14MN5MN2MN44MN2MN11MN2MN2MN17MN8MN5MN11MN22MN3MN7MN44MN3MN17MN43MN36MN2MN41MN8MN32MN9MNMN5MN18MN7MN8MN2MN8MN29MNMN21MN11MN14MN21MN13MN35MN8MN11MN38MN2MN29MN8MIMD4MN5MN5MN2MN8MN44MN8MN6MNMN83MN14MN17MN23MN8MN2MN11MN5MN5MN5MN9MN4MN14MN2MN2MN2MN11MN11MN23MN5MN5MN17MN12MN7MN11MN17MN35MN29M2N4MN35MN20MN10MN52M2N38MN57MN12MN9MN53M19H mismatches: 124 - insertions: 6 - deletions: 4
  • Influenza B virus (B/Ann Arbor/1/1986)

    Influenza B virus (B/Ann Arbor/1/1986)

    • Public DB hit
      GI:60475
      X14217
    • Hit length
      1,811 bp
    • E Value
      0E0
    • BLAST Score
      2,580.9 bits
    • Similarity
      92.44%
    • Coverage
      98.15%
    • Alignment (schematic)

      SEQ ID NO 6
      98.15% cov
      X14217
      99.89% cov
    • Alignment Length
      1,813 bp
    • CIGAR string
      1H9MN15MN3M2N2MN2MN2MIN7MI30MNMN2MN2M2NMN8MN2MN13MI3MDN3MNMN11MN18MD2MI14MN2MN14MN5MN2MN8MN6MN17MNM2N12MN2MN18MN26MN5MN2MN44MN2MN11MN2MN2MN17MN8MN5MN11MN2MN19MN3MN7MN44MN3MN17MN43MN36MN2MN41MN8MN23MN8MN9MNMN5MN26MN8MN2MN5MN2MN29MNMN21MN11MN26MN9MN13MN56MN29MN8MN2MN29MN8MIMD4MN5MN5MN2MN8MN44MN8MN6MNMN83MN14MN17MN23MN8MN2MN11MN5MN5MN5MN2MN6MN4MN14MN2MN2MN2MN11MN35MN5MN5MN17MD5MI7MN7MN11MN13MN3MN35MN29M2N4MN35MN20MN10MN3MN48M2N17MN66MN11MN22MN39M33H mismatches: 127 - insertions: 6 - deletions: 4
  • Influenza B virus (B/Texas/37/1988)

    Influenza B virus (B/Texas/37/1988)

    • Public DB hit
      GI:125663279
      CY019606
    • Hit length
      1,810 bp
    • E Value
      0E0
    • BLAST Score
      2,569.8 bits
    • Similarity
      92.33%
    • Coverage
      98.15%
    • Alignment (schematic)

      SEQ ID NO 6
      98.15% cov
      CY019606
      100% cov
    • Alignment Length
      1,813 bp
    • CIGAR string
      15H11MN4MN2MNMIMNMIMN2MI35MNMN2MN2MN2MN2MN5MN2MN15MNMN3MNMN30MD2MI14MN23MN2MN8MDMN5MI17MNM2N2MN7MN4MN12MN32MN5MN2MN17MN26MN2MN11MN2MN2MN14MN2MN8MN5MN11MN22MN3MN7MN44MN3MN17MN20MN22MN36MN2MN41MN8MN44MN5MN29MN5MN11MN15MN13MN26MN8MN36MN13MN8MN35MN8MN2MN38MN2MN29MN8MIMDMN2MN5MN5MN2MN8MN53MN6MNMN20MN62MN14MN