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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
29 sequences found in this patent (in total)

Displaying 1 - 10 of 29 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
1,658
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Nicotiana tabacum

Determined organism:
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:2687583
      AF033100
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      2,325 bp
    • E Value
      0E0
    • BLAST Score
      2,824.6 bits
    • Similarity
      100%
    • Coverage
      92.22%
    • Alignment (schematic)

      SEQ ID NO 1
      92.22% cov
      AF033100
      65.76% cov
    • Alignment Length
      1,529 bp
    • CIGAR string
      129H1529M mismatches: 0 - insertions: 0 - deletions: 0
  • Nicotiana sylvestris

    Nicotiana sylvestris

    • Public DB hit
      GI:3252791
      AB015609
    • Hit length
      1,537 bp
    • E Value
      0E0
    • BLAST Score
      2,302 bits
    • Similarity
      98.33%
    • Coverage
      79.31%
    • Alignment (schematic)

      SEQ ID NO 1
      79.31% cov
      AB015609
      85.17% cov
    • Alignment Length
      1,317 bp
    • CIGAR string
      331H4MN10M2DM3D5MN3M2D6MIMD60MN98MN32MN188MN8MN245MN207MN68MN250MN33MN48MI28M12H mismatches: 12 - insertions: 2 - deletions: 8
  • Datura stramonium

    Datura stramonium

    • Public DB hit
      GI:1531764
      Y07768
    • Hit length
      1,839 bp
    • E Value
      0E0
    • BLAST Score
      1,844.1 bits
    • Similarity
      87.24%
    • Coverage
      99.64%
    • Alignment (schematic)

      SEQ ID NO 1
      99.64% cov
      Y07768
      88.53% cov
    • Alignment Length
      1,677 bp
  • Solanum tuberosum

    Solanum tuberosum

    • Public DB hit
      GI:21484
      Z11680
      1 of 2 hits reported for Solanum tuberosum.
    • Hit length
      1,594 bp
    • E Value
      0E0
    • BLAST Score
      1,666.8 bits
    • Similarity
      86.33%
    • Coverage
      94.63%
    • Alignment (schematic)

      SEQ ID NO 1
      94.63% cov
      Z11680
      96.8% cov
    • Alignment Length
      1,595 bp
  • Solanum lycopersicum

    Solanum lycopersicum

    • Public DB hit
      GI:146552016
      EF550528
      1 of 3 hits reported for Solanum lycopersicum.
    • Hit length
      1,865 bp
    • E Value
      0E0
    • BLAST Score
      1,655.7 bits
    • Similarity
      87.09%
    • Coverage
      89.57%
    • Alignment (schematic)

      SEQ ID NO 1
      89.57% cov
      EF550528
      79.25% cov
    • Alignment Length
      1,511 bp
  • Solanum chilense

    Solanum chilense

    • Public DB hit
      GI:77745257
      DQ224276
      1 of 4 hits reported for Solanum chilense.
    • Hit length
      1,077 bp
    • E Value
      0E0
    • BLAST Score
      1,472.9 bits
    • Similarity
      91.47%
    • Coverage
      64.84%
    • Alignment (schematic)

      SEQ ID NO 1
      64.84% cov
      DQ224276
      99.54% cov
    • Alignment Length
      1,079 bp
  • Solanum peruvianum

    Solanum peruvianum

    • Public DB hit
      GI:158145304
      EU077791
      1 of 8 hits reported for Solanum peruvianum.
    • Hit length
      1,415 bp
    • E Value
      0E0
    • BLAST Score
      1,434.1 bits
    • Similarity
      89.34%
    • Coverage
      69.72%
    • Alignment (schematic)

      SEQ ID NO 1
      69.72% cov
      EU077791
      80.64% cov
    • Alignment Length
      1,163 bp
  • Solanum habrochaites

    Solanum habrochaites

    • Public DB hit
      GI:317456119
      GU950792
      1 of 3 hits reported for Solanum habrochaites.
    • Hit length
      1,415 bp
    • E Value
      0E0
    • BLAST Score
      1,428.6 bits
    • Similarity
      89.25%
    • Coverage
      69.72%
    • Alignment (schematic)

      SEQ ID NO 1
      69.72% cov
      GU950792
      80.64% cov
    • Alignment Length
      1,163 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
361
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Nicotiana tabacum

Determined organism:
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:2687584
      AAB88854
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      361 aa
    • E Value
      0E0
    • BLAST Score
      740.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAB88854
      100% cov
    • Alignment Length
      361 aa
    • CIGAR string
      361M mismatches: 0 - insertions: 0 - deletions: 0
  • Nicotiana sylvestris

    Nicotiana sylvestris

    • Public DB hit
      GI:6014931
      O80402
    • Hit length
      361 aa
    • E Value
      0E0
    • BLAST Score
      735.7 bits
    • Similarity
      99.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      O80402
      100% cov
    • Alignment Length
      361 aa
    • CIGAR string
      2MN281MN22MN53M mismatches: 3 - insertions: 0 - deletions: 0
  • Datura stramonium

    Datura stramonium

    • Public DB hit
      GI:3913419
      Q96555
    • Hit length
      362 aa
    • E Value
      0E0
    • BLAST Score
      685.6 bits
    • Similarity
      97.72%
    • Coverage
      97.23%
    • Alignment (schematic)

      SEQ ID NO 2
      97.23% cov
      Q96555
      96.96% cov
    • Alignment Length
      351 aa
  • Solanum tuberosum

    Solanum tuberosum

    • Public DB hit
      GI:807094
      AAB32507
      1 of 2 hits reported for Solanum tuberosum.
    • Hit length
      360 aa
    • E Value
      0E0
    • BLAST Score
      677.9 bits
    • Similarity
      96.87%
    • Coverage
      97.23%
    • Alignment (schematic)

      SEQ ID NO 2
      97.23% cov
      AAB32507
      97.5% cov
    • Alignment Length
      351 aa
  • Solanum lycopersicum

    Solanum lycopersicum

    • Public DB hit
      GI:146552017
      ABQ42184
    • Hit length
      360 aa
    • E Value
      0E0
    • BLAST Score
      668.7 bits
    • Similarity
      96.01%
    • Coverage
      97.23%
    • Alignment (schematic)

      SEQ ID NO 2
      97.23% cov
      ABQ42184
      97.5% cov
    • Alignment Length
      351 aa
  • Solanum chilense

    Solanum chilense

    • Public DB hit
      GI:116247770
      Q38IY3
      1 of 5 hits reported for Solanum chilense.
    • Hit length
      358 aa
    • E Value
      0E0
    • BLAST Score
      666.8 bits
    • Similarity
      96.25%
    • Coverage
      96.12%
    • Alignment (schematic)

      SEQ ID NO 2
      96.12% cov
      Q38IY3
      96.93% cov
    • Alignment Length
      347 aa
  • Solanum peruvianum

    Solanum peruvianum

    • Public DB hit
      GI:61967720
      AAX56882
      1 of 6 hits reported for Solanum peruvianum.
    • Hit length
      343 aa
    • E Value
      0E0
    • BLAST Score
      655.6 bits
    • Similarity
      96.21%
    • Coverage
      95.01%
    • Alignment (schematic)

      SEQ ID NO 2
      95.01% cov
      AAX56882
      100% cov
    • Alignment Length
      343 aa
  • Solanum habrochaites

    Solanum habrochaites

    • Public DB hit
      GI:317456096
      ADV29140
      1 of 2 hits reported for Solanum habrochaites.
    • Hit length
      343 aa
    • E Value
      0E0
    • BLAST Score
      654.4 bits
    • Similarity
      96.21%
    • Coverage
      95.01%
    • Alignment (schematic)

      SEQ ID NO 2
      95.01% cov
      ADV29140
      100% cov
    • Alignment Length
      343 aa
  • Solanum lycopersicoides

    Solanum lycopersicoides

    • Public DB hit
      GI:73808462
      AAZ85231
    • Hit length
      343 aa
    • E Value
      0E0
    • BLAST Score
      654.4 bits
    • Similarity
      96.5%
    • Coverage
      95.01%
    • Alignment (schematic)

      SEQ ID NO 2
      95.01% cov
      AAZ85231
      100% cov
    • Alignment Length
      343 aa
  • Solanum arcanum

    Solanum arcanum

    • Public DB hit
      GI:317456146
      ADV29165
      1 of 3 hits reported for Solanum arcanum.
    • Hit length
      343 aa
    • E Value
      0E0
    • BLAST Score
      653.3 bits
    • Similarity
      96.21%
    • Coverage
      95.01%
    • Alignment (schematic)

      SEQ ID NO 2
      95.01% cov
      ADV29165
      100% cov
    • Alignment Length
      343 aa
  • Solanum chmielewskii

    Solanum chmielewskii

    • Public DB hit
      GI:73808474
      AAZ85237
    • Hit length
      343 aa
    • E Value
      0E0
    • BLAST Score
      652.1 bits
    • Similarity
      95.92%
    • Coverage
      95.01%
    • Alignment (schematic)

      SEQ ID NO 2
      95.01% cov
      AAZ85237
      100% cov
    • Alignment Length
      343 aa
Occurrence
27 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,777
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Populus deltoides

Determined organism:
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:118487928
      EF147784
      1 of 4 hits reported for Populus trichocarpa.
    • Hit length
      1,779 bp
    • E Value
      0E0
    • BLAST Score
      3,066.6 bits
    • Similarity
      98.02%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 3
      99.61% cov
      EF147784
      98.99% cov
    • Alignment Length
      1,772 bp
    • CIGAR string
      3H4MN12MN127MI116M9D176MN363MN137MNM2N2MN17MN197MN50MN127MN15MN21MDMI12MN30MN19MN17MN32MN162MN26MD19MN15MN15MN24M4H mismatches: 22 - insertions: 2 - deletions: 11
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
361
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Populus deltoides

Determined organism:
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:118487929
      ABK95786
      1 of 5 hits reported for Populus trichocarpa.
    • Hit length
      361 aa
    • E Value
      0E0
    • BLAST Score
      734.6 bits
    • Similarity
      99.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ABK95786
      100% cov
    • Alignment Length
      361 aa
    • CIGAR string
      139MN132MN12MN75M mismatches: 3 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255569987
      XP_002525956
      1 of 2 hits reported for Ricinus communis.
    • Hit length
      359 aa
    • E Value
      5.13E-162
    • BLAST Score
      575.9 bits
    • Similarity
      88.29%
    • Coverage
      96.95%
    • Alignment (schematic)

      SEQ ID NO 4
      96.95% cov
      XP_002525956
      96.94% cov
    • Alignment Length
      350 aa
  • Citrus x microcarpa

    Citrus x microcarpa

    • Public DB hit
      GI:21239731
      AAM44307
    • Hit length
      361 aa
    • E Value
      3.06E-159
    • BLAST Score
      566.6 bits
    • Similarity
      85.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAM44307
      100% cov
    • Alignment Length
      361 aa
  • Malus domestica

    Malus domestica

    • Public DB hit
      GI:27597160
      BAC55114
    • Hit length
      374 aa
    • E Value
      5.98E-152
    • BLAST Score
      542.3 bits
    • Similarity
      84.92%
    • Coverage
      96.95%
    • Alignment (schematic)

      SEQ ID NO 4
      96.95% cov
      BAC55114
      95.72% cov
    • Alignment Length
      358 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225451893
      XP_002282704
      1 of 4 hits reported for Vitis vinifera.
    • Hit length
      360 aa
    • E Value
      7.68E-152
    • BLAST Score
      542 bits
    • Similarity
      83.38%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002282704
      99.72% cov
    • Alignment Length
      361 aa
  • Ipomoea nil

    Ipomoea nil

    • Public DB hit
      GI:3913439
      Q96471
    • Hit length
      362 aa
    • E Value
      4.82E-149
    • BLAST Score
      532.7 bits
    • Similarity
      83.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q96471
      99.45% cov
    • Alignment Length
      361 aa
  • Ipomoea batatas

    Ipomoea batatas

    • Public DB hit
      GI:15213964
      Q9M6K1
    • Hit length
      362 aa
    • E Value
      1.13E-146
    • BLAST Score
      524.6 bits
    • Similarity
      81.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      Q9M6K1
      99.45% cov
    • Alignment Length
      361 aa
  • Catharanthus roseus

    Catharanthus roseus

    • Public DB hit
      GI:3913416
      Q42679
    • Hit length
      357 aa
    • E Value
      1.25E-143
    • BLAST Score
      514.6 bits
    • Similarity
      80.95%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 4
      98.89% cov
      Q42679
      100% cov
    • Alignment Length
      357 aa
  • Nicotiana sylvestris

    Nicotiana sylvestris

    • Public DB hit
      GI:6014931
      O80402
    • Hit length
      361 aa
    • E Value
      1.64E-142
    • BLAST Score
      511.1 bits
    • Similarity
      81.38%
    • Coverage
      96.68%
    • Alignment (schematic)

      SEQ ID NO 4
      96.68% cov
      O80402
      96.68% cov
    • Alignment Length
      349 aa
  • Datura stramonium

    Datura stramonium

    • Public DB hit
      GI:3913419
      Q96555
    • Hit length
      362 aa
    • E Value
      7.32E-142
    • BLAST Score
      508.8 bits
    • Similarity
      81.95%
    • Coverage
      96.68%
    • Alignment (schematic)

      SEQ ID NO 4
      96.68% cov
      Q96555
      96.41% cov
    • Alignment Length
      349 aa
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
1,763
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Populus deltoides

Determined organism:
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:118486528
      EF147068
      1 of 4 hits reported for Populus trichocarpa.
    • Hit length
      1,861 bp
    • E Value
      0E0
    • BLAST Score
      2,933.6 bits
    • Similarity
      96.89%
    • Coverage
      99.72%
    • Alignment (schematic)

      SEQ ID NO 5
      99.72% cov
      EF147068
      93.93% cov
    • Alignment Length
      1,768 bp
    • CIGAR string
      2H60MI2MD32MN10MD2MD7MN82MN226MN3MN13MN19MN52MN33MN29MN73MN151MN8MN65MN29MN144MN28MN77MN17MN164MN10MN6MN47MN185M9I38MD6MD3M2D4M8D2MD2MDMN3M3D70MN10M3H mismatches: 25 - insertions: 10 - deletions: 20
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
358
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Populus deltoides

Determined organism:
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224077544
      XP_002305295
      1 of 5 hits reported for Populus trichocarpa.
    • Hit length
      357 aa
    • E Value
      0E0
    • BLAST Score
      723.8 bits
    • Similarity
      99.44%
    • Coverage
      99.72%
    • Alignment (schematic)

      SEQ ID NO 6
      99.72% cov
      XP_002305295
      100% cov
    • Alignment Length
      357 aa
    • CIGAR string
      2MN168MN95MN3MN81M2N2M1H mismatches: 6 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255569987
      XP_002525956
      1 of 2 hits reported for Ricinus communis.
    • Hit length
      359 aa
    • E Value
      7.12E-164
    • BLAST Score
      582 bits
    • Similarity
      87.71%
    • Coverage
      97.77%
    • Alignment (schematic)

      SEQ ID NO 6
      97.77% cov
      XP_002525956
      96.94% cov
    • Alignment Length
      350 aa
  • Citrus x microcarpa

    Citrus x microcarpa

    • Public DB hit
      GI:21239731
      AAM44307
    • Hit length
      361 aa
    • E Value
      3.54E-158
    • BLAST Score
      563.1 bits
    • Similarity
      86.55%
    • Coverage
      99.72%
    • Alignment (schematic)

      SEQ ID NO 6
      99.72% cov
      AAM44307
      98.89% cov
    • Alignment Length
      357 aa
  • Malus domestica

    Malus domestica

    • Public DB hit
      GI:27597160
      BAC55114
    • Hit length
      374 aa
    • E Value
      1.86E-150
    • BLAST Score
      537.3 bits
    • Similarity
      83.24%
    • Coverage
      97.77%
    • Alignment (schematic)

      SEQ ID NO 6
      97.77% cov
      BAC55114
      95.72% cov
    • Alignment Length
      358 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:225451893
      XP_002282704
      1 of 4 hits reported for Vitis vinifera.
    • Hit length
      360 aa
    • E Value
      1.91E-148
    • BLAST Score
      530.8 bits
    • Similarity
      82.07%
    • Coverage
      99.72%
    • Alignment (schematic)

      SEQ ID NO 6
      99.72% cov
      XP_002282704
      98.61% cov
    • Alignment Length
      357 aa
  • Ipomoea nil

    Ipomoea nil

    • Public DB hit
      GI:3913439
      Q96471
    • Hit length
      362 aa
    • E Value
      5.76E-148
    • BLAST Score
      529.3 bits
    • Similarity
      82.58%
    • Coverage
      99.44%
    • Alignment (schematic)

      SEQ ID NO 6
      99.44% cov
      Q96471
      98.34% cov
    • Alignment Length
      356 aa
  • Ipomoea batatas

    Ipomoea batatas

    • Public DB hit
      GI:15213964
      Q9M6K1
    • Hit length
      362 aa
    • E Value
      2.26E-145
    • BLAST Score
      520.4 bits
    • Similarity
      81.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      Q9M6K1
      99.45% cov
    • Alignment Length
      360 aa
  • Catharanthus roseus

    Catharanthus roseus

    • Public DB hit
      GI:3913416
      Q42679
    • Hit length
      357 aa
    • E Value
      1.69E-144
    • BLAST Score
      517.7 bits
    • Similarity
      81.51%
    • Coverage
      99.72%
    • Alignment (schematic)

      SEQ ID NO 6
      99.72% cov
      Q42679
      100% cov
    • Alignment Length
      357 aa
  • Nicotiana sylvestris

    Nicotiana sylvestris

    • Public DB hit
      GI:6014931
      O80402
    • Hit length
      361 aa
    • E Value
      1.04E-142
    • BLAST Score
      511.5 bits
    • Similarity
      81.09%
    • Coverage
      97.49%
    • Alignment (schematic)

      SEQ ID NO 6
      97.49% cov
      O80402
      96.68% cov
    • Alignment Length
      349 aa
  • Nicotiana tabacum

    Nicotiana tabacum

    • Public DB hit
      GI:3913423
      O04009
      1 of 2 hits reported for Nicotiana tabacum.
    • Hit length
      361 aa
    • E Value
      5.53E-142
    • BLAST Score
      509.2 bits
    • Similarity
      81.03%
    • Coverage
      97.21%
    • Alignment (schematic)

      SEQ ID NO 6
      97.21% cov
      O04009
      96.4% cov
    • Alignment Length
      348 aa
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
2,523
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Populus deltoides

Determined organism:
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
361
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Populus deltoides

Determined organism:
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:118487929
      ABK95786
      1 of 5 hits reported for Populus trichocarpa.
    • Hit length
      361 aa
    • E Value
      0E0
    • BLAST Score
      742.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ABK95786
      100% cov
    • Alignment Length
      361 aa
    • CIGAR string
      361M mismatches: 0 - insertions: 0 - deletions: 0
  • Ricinus communis

    Ricinus communis

    • Public DB hit
      GI:255569987
      XP_002525956
      1 of 2 hits reported for Ricinus communis.
    • Hit length
      359 aa
    • E Value
      9.13E-160
    • BLAST Score
      568.2 bits
    • Similarity
      87.71%
    • Coverage
      96.95%
    • Alignment (schematic)

      SEQ ID NO 8
      96.95% cov
      XP_002525956
      96.94% cov
    • Alignment Length
      350 aa
  • Citrus x microcarpa

    Citrus x microcarpa

    • Public DB hit
      GI:21239731
      AAM44307
    • Hit length
      361 aa
    • E Value
      2.19E-157
    • BLAST Score
      560.5 bits
    • Similarity
      85.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAM44307
      100% cov
    • Alignment Length
      361 aa
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:86990289
      CAD98785
      1 of 4 hits reported for Vitis vinifera.
    • Hit length
      358 aa
    • E Value
      2.41E-150
    • BLAST Score
      537 bits
    • Similarity
      83.95%
    • Coverage
      96.68%
    • Alignment (schematic)

      SEQ ID NO 8
      96.68% cov
      CAD98785
      97.49% cov
    • Alignment Length
      349 aa
  • Malus domestica

    Malus domestica

    • Public DB hit
      GI:27597160
      BAC55114
    • Hit length
      374 aa
    • E Value
      9.95E-150
    • BLAST Score
      535 bits
    • Similarity
      84.36%
    • Coverage
      96.95%
    • Alignment (schematic)

      SEQ ID NO 8
      96.95% cov
      BAC55114
      95.72% cov
    • Alignment Length
      358 aa
  • Ipomoea nil

    Ipomoea nil

    • Public DB hit
      GI:3913439
      Q96471
    • Hit length
      362 aa
    • E Value
      2.01E-147
    • BLAST Score
      527.3 bits
    • Similarity
      82.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      Q96471
      99.45% cov
    • Alignment Length
      361 aa
  • Ipomoea batatas

    Ipomoea batatas

    • Public DB hit
      GI:15213964
      Q9M6K1
    • Hit length
      362 aa
    • E Value
      6.51E-146
    • BLAST Score
      522.3 bits
    • Similarity
      81.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      Q9M6K1
      99.45% cov
    • Alignment Length
      361 aa
  • Catharanthus roseus

    Catharanthus roseus

    • Public DB hit
      GI:3913416
      Q42679
    • Hit length
      357 aa
    • E Value
      6.62E-143
    • BLAST Score
      512.3 bits
    • Similarity
      80.95%
    • Coverage
      98.89%
    • Alignment (schematic)

      SEQ ID NO 8
      98.89% cov
      Q42679
      100% cov
    • Alignment Length
      357 aa
  • Nicotiana sylvestris

    Nicotiana sylvestris

    • Public DB hit
      GI:6014931
      O80402
    • Hit length
      361 aa
    • E Value
      1.57E-140
    • BLAST Score
      504.2 bits
    • Similarity
      80.8%
    • Coverage
      96.68%
    • Alignment (schematic)

      SEQ ID NO 8
      96.68% cov
      O80402
      96.68% cov
    • Alignment Length
      349 aa
  • Datura stramonium

    Datura stramonium

    • Public DB hit
      GI:3913419
      Q96555
    • Hit length
      362 aa
    • E Value
      4.91E-140
    • BLAST Score
      502.7 bits
    • Similarity
      81.38%
    • Coverage
      96.68%
    • Alignment (schematic)

      SEQ ID NO 8
      96.68% cov
      Q96555
      96.41% cov
    • Alignment Length
      349 aa
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
1,878
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:186509696
      NM_001125085
      1 of 12 hits reported for Arabidopsis thaliana.
    • Hit length
      1,876 bp
    • E Value
      0E0
    • BLAST Score
      3,461.7 bits
    • Similarity
      100%
    • Coverage
      99.79%
    • Alignment (schematic)

      SEQ ID NO 9
      99.79% cov
      NM_001125085
      99.89% cov
    • Alignment Length
      1,874 bp
    • CIGAR string
      1874M4H mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297828697
      XM_002882185
    • Hit length
      1,691 bp
    • E Value
      0E0
    • BLAST Score
      2,813.6 bits
    • Similarity
      96.6%
    • Coverage
      90.79%
    • Alignment (schematic)

      SEQ ID NO 9
      90.79% cov
      XM_002882185
      99.88% cov
    • Alignment Length
      1,707 bp
  • Eutrema halophilum

    Eutrema halophilum

    • Public DB hit
      GI:312281870
      AK352715
    • Hit length
      1,849 bp
    • E Value
      0E0
    • BLAST Score
      2,115.5 bits
    • Similarity
      90.85%
    • Coverage
      85.36%
    • Alignment (schematic)

      SEQ ID NO 9
      85.36% cov
      AK352715
      84.91% cov
    • Alignment Length
      1,607 bp
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:42766609
      AY536644
      1 of 2 hits reported for Brassica juncea.
    • Hit length
      1,705 bp
    • E Value
      0E0
    • BLAST Score
      1,923.5 bits
    • Similarity
      87.93%
    • Coverage
      89.19%
    • Alignment (schematic)

      SEQ ID NO 9
      89.19% cov
      AY536644
      96.07% cov
    • Alignment Length
      1,698 bp
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:295885767
      HM013966
      1 of 2 hits reported for Brassica napus.
    • Hit length
      1,746 bp
    • E Value
      0E0
    • BLAST Score
      1,705.6 bits
    • Similarity
      87.62%
    • Coverage
      79.77%
    • Alignment (schematic)

      SEQ ID NO 9
      79.77% cov
      HM013966
      84.54% cov
    • Alignment Length
      1,518 bp
Occurrence
5 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
366
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Arabidopsis thaliana

Determined organism:
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:15232910
      NP_186896
      1 of 5 hits reported for Arabidopsis thaliana.
    • Hit length
      366 aa
    • E Value
      0E0
    • BLAST Score
      753.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NP_186896
      100% cov
    • Alignment Length
      366 aa
    • CIGAR string
      366M mismatches: 0 - insertions: 0 - deletions: 0
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297828698
      XP_002882231
      1 of 2 hits reported for Arabidopsis lyrata subsp. lyrata.
    • Hit length
      366 aa
    • E Value
      0E0
    • BLAST Score
      742.3 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_002882231
      100% cov
    • Alignment Length
      366 aa
  • Eutrema halophilum

    Eutrema halophilum

    • Public DB hit
      GI:312281871
      BAJ33801
    • Hit length
      366 aa
    • E Value
      0E0
    • BLAST Score
      726.1 bits
    • Similarity
      98.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BAJ33801
      100% cov
    • Alignment Length
      366 aa
  • Brassica juncea

    Brassica juncea

    • Public DB hit
      GI:42766610
      AAS45435
      1 of 5 hits reported for Brassica juncea.
    • Hit length
      366 aa
    • E Value
      0E0
    • BLAST Score
      723.8 bits
    • Similarity
      98.09%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAS45435
      100% cov
    • Alignment Length
      366 aa
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:295885772
      ADG57793
      1 of 2 hits reported for Brassica napus.
    • Hit length
      368 aa
    • E Value
      0E0
    • BLAST Score
      709.9 bits
    • Similarity
      97.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ADG57793
      100% cov
    • Alignment Length
      368 aa
  • Cleome spinosa

    Cleome spinosa

    • Public DB hit
      GI:90657571
      ABD96871
      1 of 2 hits reported for Cleome spinosa.
    • Hit length
      363 aa
    • E Value
      2E-158
    • BLAST Score
      563.9 bits
    • Similarity
      83.47%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ABD96871
      99.45% cov
    • Alignment Length
      369 aa
  • Citrus x microcarpa

    Citrus x microcarpa

    • Public DB hit
      GI:21239731
      AAM44307
    • Hit length
      361 aa
    • E Value
      4.12E-136
    • BLAST Score
      489.6 bits
    • Similarity
      79.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAM44307
      98.61% cov
    • Alignment Length
      367 aa
  • Populus trichocarpa

    Populus trichocarpa

    • Public DB hit
      GI:224127572
      XP_002329311
      1 of 2 hits reported for Populus trichocarpa.
    • Hit length
      357 aa
    • E Value
      4.33E-135
    • BLAST Score
      486.5 bits
    • Similarity
      79.67%
    • Coverage
      99.45%
    • Alignment (schematic)

      SEQ ID NO 10
      99.45% cov
      XP_002329311
      99.16% cov
    • Alignment Length
      364 aa
Occurrence
64 times in PatSeqDB
Tools
PatSeq Finder

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