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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
4 sequences found in this patent (in total)

Displaying 4 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
600
Type
nucleotide
Locations
Drawings

Declared organism:
Borrelia burgdorferi

Determined organism:
  • Cloning vector PinPoint Xa-2

    Cloning vector PinPoint Xa-2

    • Public DB hit
      GI:1200493
      U47627
    • Hit length
      3,332 bp
    • E Value
      0E0
    • BLAST Score
      797 bits
    • Similarity
      100%
    • Coverage
      71.83%
    • Alignment (schematic)

      SEQ ID NO 1
      71.83% cov
      U47627
      12.94% cov
    • Alignment Length
      431 bp
    • CIGAR string
      431M169H mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector PinPoint Xa-3

    Cloning vector PinPoint Xa-3

    • Public DB hit
      GI:1200496
      U47628
    • Hit length
      3,333 bp
    • E Value
      0E0
    • BLAST Score
      791.5 bits
    • Similarity
      99.77%
    • Coverage
      71.83%
    • Alignment (schematic)

      SEQ ID NO 1
      71.83% cov
      U47628
      12.96% cov
    • Alignment Length
      432 bp
    • CIGAR string
      394MI37M169H mismatches: 0 - insertions: 1 - deletions: 0
  • Cloning vector PinPoint Xa-1

    Cloning vector PinPoint Xa-1

    • Public DB hit
      GI:9055393
      U47626
    • Hit length
      3,331 bp
    • E Value
      0E0
    • BLAST Score
      789.6 bits
    • Similarity
      99.77%
    • Coverage
      71.83%
    • Alignment (schematic)

      SEQ ID NO 1
      71.83% cov
      U47626
      12.91% cov
    • Alignment Length
      431 bp
    • CIGAR string
      393MD37M169H mismatches: 0 - insertions: 0 - deletions: 1
  • Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1

    Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1

    • Public DB hit
      GI:296920963
      FN806773
    • Hit length
      2,616,384 bp
    • E Value
      0E0
    • BLAST Score
      649.3 bits
    • Similarity
      98.64%
    • Coverage
      60.83%
    • Alignment (schematic)

      SEQ ID NO 1
      60.83% cov
      FN806773
      0.01% cov
    • Alignment Length
      368 bp
    • CIGAR string
      120MIMI2MI191MN17MN32M235H mismatches: 2 - insertions: 3 - deletions: 0
  • Propionibacterium freudenreichii subsp. shermanii

    Propionibacterium freudenreichii subsp. shermanii

    • Public DB hit
      GI:32452376
      AJ535201
      1 of 2 hits reported for Propionibacterium freudenreichii subsp. shermanii.
    • Hit length
      372 bp
    • E Value
      0E0
    • BLAST Score
      649.3 bits
    • Similarity
      98.64%
    • Coverage
      60.83%
    • Alignment (schematic)

      SEQ ID NO 1
      60.83% cov
      AJ535201
      98.92% cov
    • Alignment Length
      368 bp
    • CIGAR string
      120MIMI2MI191MN17MN32M235H mismatches: 2 - insertions: 3 - deletions: 0
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
194
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Borrelia burgdorferi

Determined organism:
  • Cloning vector PinPoint Xa-1

    Cloning vector PinPoint Xa-1

    • Public DB hit
      GI:1200491
      AAA89090
    • Hit length
      129 aa
    • E Value
      2.29E-64
    • BLAST Score
      249.6 bits
    • Similarity
      100%
    • Coverage
      66.49%
    • Alignment (schematic)

      SEQ ID NO 2
      66.49% cov
      AAA89090
      100% cov
    • Alignment Length
      129 aa
    • CIGAR string
      129M65H mismatches: 0 - insertions: 0 - deletions: 0
  • Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1

    Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1

    • Public DB hit
      GI:297627033
      YP_003688796
    • Hit length
      123 aa
    • E Value
      4.28E-43
    • BLAST Score
      178.7 bits
    • Similarity
      90.24%
    • Coverage
      62.89%
    • Alignment (schematic)

      SEQ ID NO 2
      62.89% cov
      YP_003688796
      100% cov
    • Alignment Length
      123 aa
    • CIGAR string
      41MNMNM9NI68M72H mismatches: 11 - insertions: 1 - deletions: 0
  • Propionibacterium acnes HL005PA4

    Propionibacterium acnes HL005PA4

    • Public DB hit
      GI:314916596
      EFS80427
    • Hit length
      118 aa
    • E Value
      1.3E-28
    • BLAST Score
      131 bits
    • Similarity
      76.23%
    • Coverage
      62.89%
    • Alignment (schematic)

      SEQ ID NO 2
      62.89% cov
      EFS80427
      100% cov
    • Alignment Length
      122 aa
  • Propionibacterium acnes HL037PA2

    Propionibacterium acnes HL037PA2

    • Public DB hit
      GI:313836420
      EFS74134
    • Hit length
      119 aa
    • E Value
      2.15E-24
    • BLAST Score
      116.7 bits
    • Similarity
      78.69%
    • Coverage
      62.89%
    • Alignment (schematic)

      SEQ ID NO 2
      62.89% cov
      EFS74134
      100% cov
    • Alignment Length
      122 aa
  • Propionibacterium acnes KPA171202

    Propionibacterium acnes KPA171202

    • Public DB hit
      GI:50843451
      YP_056678
    • Hit length
      120 aa
    • E Value
      6.48E-23
    • BLAST Score
      111.7 bits
    • Similarity
      77.87%
    • Coverage
      62.89%
    • Alignment (schematic)

      SEQ ID NO 2
      62.89% cov
      YP_056678
      100% cov
    • Alignment Length
      122 aa
  • Propionibacterium acnes J139

    Propionibacterium acnes J139

    • Public DB hit
      GI:282854785
      ZP_06264119
    • Hit length
      120 aa
    • E Value
      8.89E-23
    • BLAST Score
      111.3 bits
    • Similarity
      77.87%
    • Coverage
      62.89%
    • Alignment (schematic)

      SEQ ID NO 2
      62.89% cov
      ZP_06264119
      100% cov
    • Alignment Length
      122 aa
  • Propionibacterium acnes HL082PA2

    Propionibacterium acnes HL082PA2

    • Public DB hit
      GI:314967323
      EFT11422
    • Hit length
      120 aa
    • E Value
      3.64E-22
    • BLAST Score
      109.4 bits
    • Similarity
      77.05%
    • Coverage
      62.89%
    • Alignment (schematic)

      SEQ ID NO 2
      62.89% cov
      EFT11422
      100% cov
    • Alignment Length
      122 aa
  • Propionibacterium acnes HL013PA1

    Propionibacterium acnes HL013PA1

    • Public DB hit
      GI:313763810
      EFS35174
    • Hit length
      122 aa
    • E Value
      2.08E-21
    • BLAST Score
      106.7 bits
    • Similarity
      76.61%
    • Coverage
      62.89%
    • Alignment (schematic)

      SEQ ID NO 2
      62.89% cov
      EFS35174
      100% cov
    • Alignment Length
      124 aa
Occurrence
8 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
36
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
34
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
6 times in PatSeqDB
Tools
PatSeq Finder

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