Patents
US 6586175 B1

Genotyping The Human Udp-glucuronosyltransferase 2b7 (ugt2b7) Gene

Granted Patent
US 6586175 B1
059-607-425-597-407
Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext
164 sequences found in this patent (in total)

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Download sequences in fasta format: 3 peptides 161 DNAs

Displaying 1 - 10 of 164 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,323
Sequence Type
DNA
Locations
Claims, Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:8650277
      AF135416
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      27,310 bp
    • E Value
      0E0
    • BLAST Score
      2,436.9 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF135416
      4.84% cov
    • Alignment Length
      1,323 bp
    • CIGAR string
      1319MD3M mismatches: 0 - insertions: 0 - deletions: 1
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:37777362
      AC139345
    • Hit length
      179,810 bp
    • E Value
      0E0
    • BLAST Score
      1,701.9 bits
    • Similarity
      90.19%
    • Coverage
      99.24%
    • Alignment (schematic)

      SEQ ID NO 1
      99.24% cov
      AC139345
      0.73% cov
    • Alignment Length
      1,325 bp
    • CIGAR string
      3H11MN7MN4MN18MN11MN10MN28MN10MI10MN16MN92MN50MN29MN2MN17MN9MN6MN4MN8MD3MNMIMN8MN6M2N14MN3MN4M2N10MN18M3N3MIMD2MN15MN4MIMD3MN16MN2MN6MN15MN10MNM2N6MIMD16MN3MNMN5MN4MN55MN3MN5MN19MN19MN29MN12MN8MN19MN2MN18MNMN5MN7MN6MN5MN14MN3MN2MN10MN8MN3MN3M2N4MN18MN24MD6MN3MI4MN4MN32MN2MN21MN6MIMND6MN2MI18M2DMN2MNMD3MD2MN11MN12MN6MN4MN3MN8MN10MNMIMD9MN17MN6MN12MN21MN7MN7MD7MND11MD8MN2MD2MI14MN3MN11MN19MI11MNMN7MN14MI9M7H mismatches: 103 - insertions: 12 - deletions: 15
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819651
      XM_001161846
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,494 bp
    • E Value
      0E0
    • BLAST Score
      1,498.8 bits
    • Similarity
      99.16%
    • Coverage
      62.96%
    • Alignment (schematic)

      SEQ ID NO 1
      62.96% cov
      XM_001161846
      33.36% cov
    • Alignment Length
      833 bp
    • CIGAR string
      69H49MN173MN74MN7MN138MN19MN363MD3M421H mismatches: 6 - insertions: 0 - deletions: 1
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:148529039
      AC203187
    • Hit length
      171,071 bp
    • E Value
      0E0
    • BLAST Score
      1,310.4 bits
    • Similarity
      85.09%
    • Coverage
      99.32%
    • Alignment (schematic)

      SEQ ID NO 1
      99.32% cov
      AC203187
      0.76% cov
    • Alignment Length
      1,341 bp
    • CIGAR string
      4MN4MD2MNMN7MN3MN13MNMIM2IN2M2I5MI3MN5MN11MN3M2N19MN2MN6MIMN7MN23MN30MN10MN15MDMIN7MN5MN7MN40MNMDMI6MIMD5MN11MN14MN2MN30MN15MN4MIMN3MD10MNMN4M2N8MN14M2N23MDMNMI3MDMIMNMN3MNMNMN11MN4MN11MN10MN13MN18MDMI3M2N7MN7MN8MN3MN17MD3MI13MN17MN3MD2MI6MN2MN4MN4MNMN13MN3MN2MN4MN5MI3MD2MN5MN9MN12M3N11MN8MN4MN8MN5MN2MN18MN7MN14MN38MN5MN6MNMNMN24MN2MN19MN2D6M2D2MN2D2MIMD2MNMDMD2MNMD3MNMD2MDMD6MNMN3MN2MN30MD4MD4MI9MN4MN3MNM2N2MN8MN3MN7M2NMN9MDMIMI10MN11MN3MN10MNMN6MN2MD3MI4MN6MN3MNMN10MN6M3D11MN3MN5MN4MN8MI4MI9MNMNMD2MNMN2M2N2MD2MNMI8MN11MNIMND4MN19MI2MN15MDMD9M2N11M9H mismatches: 137 - insertions: 27 - deletions: 36
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
2
Length
746
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:94717611
      DQ520733
      1 of 14 hits reported for Homo sapiens.
    • Hit length
      19,657 bp
    • E Value
      0E0
    • BLAST Score
      1,378.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      DQ520733
      3.8% cov
    • Alignment Length
      746 bp
    • CIGAR string
      746M mismatches: 0 - insertions: 0 - deletions: 0
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:37777362
      AC139345
    • Hit length
      179,810 bp
    • E Value
      0E0
    • BLAST Score
      930 bits
    • Similarity
      89.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC139345
      0.41% cov
    • Alignment Length
      752 bp
    • CIGAR string
      16MN3MN18MN20MN12MIMNMN6MN12M2NMNMN10MN31M5D4MN3MD11MN8MI4MI3MDN5MN9MN5MN3MI2MD6MN13MN54MN5MN4MN38MN24MD12MN7MNMN8MNMN9MN13MN11M2N3MNI9MD8MN10MN5MN2MN13M2N10MN19MDMI11MN5MN10MN8MN24MN3MN13MN2M2N6MN15MN14MN8MN4MNMN13MN15MN3MD2MN11MN17MN8MN4M mismatches: 62 - insertions: 6 - deletions: 12
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:88196915
      AC182428
    • Hit length
      210,098 bp
    • E Value
      0E0
    • BLAST Score
      651.1 bits
    • Similarity
      82.63%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC182428
      0.37% cov
    • Alignment Length
      783 bp
    • CIGAR string
      5MN8M2N4MN7MN8MD13M2N7MN6MN5MIMN8MN5MNMNMD18MN13M2N10MN7M3N18MNMN5MD7MIMIMDN2M2N17MN16M2N9MN18MN4MN7MN5MIMDMN20MN2MN35MN2MN9MI2MI2M2NIMIMI3MNI6MD2MI7MN8MD3MI2MN7MIMIMIMN4MN18MN7MN3MI2MN4M2NMN25MNMN5MN3MN4MN6MIMDMN5MN3MN2MNMN6MN4MN5MN7MN23MI9MI3MND5MN3MNM2N10MN3MN3MN2MN5MN8MN4MN10MNMN8MN3MNM3IM5IMIM9I12MN4MN3MN13MN2M2N13MN15MNMNMN5M mismatches: 90 - insertions: 37 - deletions: 9
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:168986621
      AC206703
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      204,619 bp
    • E Value
      6.14E-170
    • BLAST Score
      606.8 bits
    • Similarity
      83.72%
    • Coverage
      88.61%
    • Alignment (schematic)

      SEQ ID NO 2
      88.61% cov
      AC206703
      0.32% cov
    • Alignment Length
      682 bp
    • CIGAR string
      1H4MN6MN7MN8MN12MN8MN7M2DM2D4M2D2M3D8MN3MNMI2MD5MN14MN13M2N15MN2M3N5MN4MDMIN5MNMDMI9MI3MI2M2D2MN18MN15MIMDN20MN7MN4MN5MN10MN3MN10MN5MN2MN20MN17MN9MI2MI2MNM2IMIMI3MN6MDMI4M2N11MDMI4M2N6M3I8MN8M2N7MD3MN4MNMI6MN2M2NMN3MN21MNMN14MN4MN3M2NMN3MN3MN2MI2MD6MN4MN5MN7MN2MN14MN4MI10MDMI15MN10MN3MN37MNMN8MN3M84H mismatches: 70 - insertions: 21 - deletions: 20
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:148529039
      AC203187
    • Hit length
      171,071 bp
    • E Value
      7.94E-169
    • BLAST Score
      603.1 bits
    • Similarity
      81.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC203187
      0.45% cov
    • Alignment Length
      785 bp
    • CIGAR string
      5MN6MN2MN3M2N6MN9MD5MN8MN5MNMN12MIMN8MN5MN12MNMN6M2N12MDMIN12MN5MNMN18MNMN14MIMD2M3N10MN6MN10MN5M2N28MN4MN7MN5MN2MN20MN2M2N12MN24MN9MI2MIMIMIMN2MI3MNI6MD3MI6MN8MD4MNMI5M3IMN8MN4MN21MN3MI7M2NMN23MNMNMN6MN7MN6MN2MN5MN3MN2MNMNM2N3MN4MN2MD4MI6MN7M2N7MN6MI9MI3MND5M2N4M2N10MN2M2N12MN8MN4MDMI4MN2MNIMN2MD6MIM3IMIM2IMNM2IMNIM9I13MN4MN3MN13MN2M2N13MN7MN7MNMNMN5M mismatches: 97 - insertions: 39 - deletions: 9
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
3
Length
785
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:8650277
      AF135416
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      27,310 bp
    • E Value
      0E0
    • BLAST Score
      1,450.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF135416
      2.87% cov
    • Alignment Length
      785 bp
    • CIGAR string
      785M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:156627771
      AC206463
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      196,461 bp
    • E Value
      0E0
    • BLAST Score
      1,339.9 bits
    • Similarity
      97.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AC206463
      0.4% cov
    • Alignment Length
      786 bp
    • CIGAR string
      68MN15MI61MN67MN100MN79MN56MN8MN3MN53MN11MN4MNMN4MN57MN40MN22MN58MN7MN22MN30M mismatches: 19 - insertions: 1 - deletions: 0
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:37777362
      AC139345
    • Hit length
      179,810 bp
    • E Value
      0E0
    • BLAST Score
      987.2 bits
    • Similarity
      89.65%
    • Coverage
      99.36%
    • Alignment (schematic)

      SEQ ID NO 3
      99.36% cov
      AC139345
      0.43% cov
    • Alignment Length
      792 bp
    • CIGAR string
      2H4MN2MN8MN11MN11MN2MN16MN8MN7M2N15MN4MN8MN6MN8MNMN4MN10M2NMN11M2IMNM2I3MI4MN5MN30MI2MD4MN5M2N3MD4MN39MN6MN26MN9MN18MN38MN10M2N6MN2M2N7MIMD8MN6MN13MN26MN23MN27MN5MN10MDMI4MNMN6MD3MI52MN15MN24MN22MN27MN10MND3MI7MDMI6MN7M2NMI2MD6MN10M2DM2D12MN10M3H mismatches: 58 - insertions: 12 - deletions: 12
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
4
Length
1,138
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:8650277
      AF135416
      1 of 13 hits reported for Homo sapiens.
    • Hit length
      27,310 bp
    • E Value
      0E0
    • BLAST Score
      2,080.4 bits
    • Similarity
      99.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AF135416
      4.17% cov
    • Alignment Length
      1,140 bp
    • CIGAR string
      996MI2MD45MI37MD56M mismatches: 0 - insertions: 2 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:156627771
      AC206463
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      196,461 bp
    • E Value
      0E0
    • BLAST Score
      1,849.6 bits
    • Similarity
      95.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AC206463
      0.58% cov
    • Alignment Length
      1,152 bp
    • CIGAR string
      22MN44MN3MN14MN83MD2MI49MIM3I8MN24MN20MN26M3D153MN32MN36MN11MN75MN7MNI17M2IM4I13MN20MN41MN106MN27M2N103MN24MN7MD3MI5MN36MN3MI10MN3MN22MD6MN21MN27M mismatches: 27 - insertions: 14 - deletions: 6
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:37777362
      AC139345
    • Hit length
      179,810 bp
    • E Value
      0E0
    • BLAST Score
      1,419.3 bits
    • Similarity
      89.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AC139345
      0.63% cov
    • Alignment Length
      1,160 bp
    • CIGAR string
      43MN17MN5MN3MN11MN2MN15MN8MN6MI25MI5MN10MD11MN32MN8MN13MN3MN3MN14MN3MN5MN43M3D23MN2MN11MNMN7MN3MN69MN16MN13MN32MN10MN25MN11MIMD13MI2MDMN10MN33MN19M2N3MI12M3IM2IMIMN12MN7MN4MN6M3DM2D2MD28MN4MN2MN15MN10M2DM2DMD22MNM3DMD5MDMDM2D30MN17MN5MN3M2N24MN12MN7MN19MN11MN33MN6M2D10MN6MNI2MD4MN29M2NMN2M2NMNMI6MN3MN24MNMIM2D2MN15M3I2M3IM2I16MN5MN10M mismatches: 70 - insertions: 22 - deletions: 30
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:88196915
      AC182428
    • Hit length
      210,098 bp
    • E Value
      0E0
    • BLAST Score
      898.6 bits
    • Similarity
      82.98%
    • Coverage
      90.07%
    • Alignment (schematic)

      SEQ ID NO 4
      90.07% cov
      AC182428
      0.5% cov
    • Alignment Length
      1,075 bp
    • CIGAR string
      4MI2MN10MN35MN6MI2MIMIM2IMN5MI2M3IMIMIMN3M2I3MIMI4N8MNMI3MIMI5MN3MN2M2N2MI2MN7MN13MN28MN9MN6MN10MN9MN3MD8MN2M2IM2I5MN3MI5MN4MN3M2N10MN12M2I7MI2MDMIMD4MDN11M3DN7M2N2M2N2MN4MNMN14MNMN30MN4MN2M2N39MNMN5MN38MN5MN5M2N5M2N12MN13MNMIMND4MI2MD9MNMI3MN7MN5MN4MN4MN4MI6MDM2D5MN5D3MD7MN17MNI14M4IMIMI20MN3MN11M3N5MN6MNIMI21M2N2MN13MNMNDMI9MNMN3MI2MDMN4MNMN22MD2MI5MD2MI2MN16MN7MIMD3MN9M3D4MN3MN2MIMD3MN6MNMN4MN5MN13M2N5MN14MN5MN3MN17MN12MN2MI2MD24MN7MI2MD3MN14MNMN5M113H mismatches: 104 - insertions: 50 - deletions: 29
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:148529039
      AC203187
    • Hit length
      171,071 bp
    • E Value
      0E0
    • BLAST Score
      808.1 bits
    • Similarity
      82.92%
    • Coverage
      81.63%
    • Alignment (schematic)

      SEQ ID NO 4
      81.63% cov
      AC203187
      0.54% cov
    • Alignment Length
      960 bp
    • CIGAR string
      88H6MI6MDMI3MNMN2M2N2M2N3MN6MNMN13MN28MN3M2NMI3MN6MN2MN7MN18M2IM2IN2MN8MN3MI2MN2MN4MN4MN15MN7M2I10MD2M2I4MD12M3DN4MN2M2NMD2MI2MD4MNMN10MIMD2MN8MN28MN33MN5MN5MN5MN14MN2MN20MN5MN6MN3MNM2N12MN15MIMND4MN8MN2MN2MI15M2N4MN2MN2MI3MD8M2D4MDMN3DMD2MD17MN7M2N8MI5M4IMIMI2MN17MN3MN11M3N5MN4MIMIMN19MN3MN2MN7MN5M4N8MI3MIMN3MDMDMN4MN24MN7MD2MI2MN16MN3MN4MN3MN4MD2MDMD10MN3MN3MN8MN10M2N12M2N12M2DM2D3MN5MN11MN9MN10MNMN2MI2MD24MN7MI2MND2MN7MN6M121H mismatches: 102 - insertions: 31 - deletions: 31
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
5
Length
689
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:94717611
      DQ520733
      1 of 13 hits reported for Homo sapiens.
    • Hit length
      19,657 bp
    • E Value
      0E0
    • BLAST Score
      1,273.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      DQ520733
      3.51% cov
    • Alignment Length
      689 bp
    • CIGAR string
      689M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:156627771
      AC206463
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      196,461 bp
    • E Value
      0E0
    • BLAST Score
      1,151.6 bits
    • Similarity
      96.81%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AC206463
      0.35% cov
    • Alignment Length
      689 bp
    • CIGAR string
      4MN38M2N124MN4MN5MN80MN21MN31MN56MN15MN5MN22MN10MN9MN8MN3MN126MN10MN23MN6MN30MN37M mismatches: 22 - insertions: 0 - deletions: 0
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:37777362
      AC139345
    • Hit length
      179,810 bp
    • E Value
      0E0
    • BLAST Score
      990.9 bits
    • Similarity
      92.73%
    • Coverage
      99.85%
    • Alignment (schematic)

      SEQ ID NO 5
      99.85% cov
      AC139345
      0.38% cov
    • Alignment Length
      688 bp
    • CIGAR string
      1H12MN24MN4MNMN16MN49MN13MN47MN5MN17MN29MNMN12MN17MN21MN10MN15MN10MN14MN13MN7MN13MN11MN3MN5MN13MN2MN16MN9MN12MN24MN8MN4M2N43MN12MN17MDMD3MD5MN5MN4MN24MN13MN10MN11M2NMN3MN15MN14M mismatches: 47 - insertions: 0 - deletions: 3
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:88196915
      AC182428
    • Hit length
      210,098 bp
    • E Value
      0E0
    • BLAST Score
      793.3 bits
    • Similarity
      87.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AC182428
      0.33% cov
    • Alignment Length
      703 bp
    • CIGAR string
      3MN12MN10MN3MN2MD2MI6MN5MN6M2N3MN9M2D53MN5MN41MN17MN14MDMI13MN20MN13MN15M2N8MN22MN2MN6MN24MN7MN3M2NMN5MI3MN6MN4MN6MN3MN5MN10MN3MN3MN14MN4MN4MN12MN8MN25MDMDMNI14M2N7MN9MN3MN5M2N2MN3MN5MN27MIMD11MNMIMNM5I5MIMN3MD2MD6MN4MN6MN2MN9MD2MI5MN3M2N23MDMI11M mismatches: 62 - insertions: 14 - deletions: 11
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:148529039
      AC203187
    • Hit length
      171,071 bp
    • E Value
      0E0
    • BLAST Score
      665.9 bits
    • Similarity
      87.76%
    • Coverage
      83.31%
    • Alignment (schematic)

      SEQ ID NO 5
      83.31% cov
      AC203187
      0.33% cov
    • Alignment Length
      580 bp
    • CIGAR string
      12H4MD6MN12MN6MN5MN6M2N3MN9M2D39MN13MN26MN20MN2MN2MN11M2N14MN13MN5MN14MN9MN4MN14MN9MN22MNIMND39MN3M2NMN5MI3MN6MN6MN4MN3MN5MN10MN3MN3MN14MN2MNMN3MIMD12MN8MN3MNMN18MIMDMNMN14MN8MI2MD4M2NMN9M2N2MN3MN5MN19MN7MIMD8M103H mismatches: 57 - insertions: 6 - deletions: 8
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
6
Length
1,589
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:8650277
      AF135416
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      27,310 bp
    • E Value
      0E0
    • BLAST Score
      2,911.4 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AF135416
      5.81% cov
    • Alignment Length
      1,590 bp
    • CIGAR string
      548MI25MD115MN891MD7M mismatches: 1 - insertions: 1 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:156627771
      AC206463
    • Hit length
      196,461 bp
    • E Value
      0E0
    • BLAST Score
      2,532.9 bits
    • Similarity
      95.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AC206463
      0.8% cov
    • Alignment Length
      1,596 bp
    • CIGAR string
      10MN36MN12MN13MN8MD2MI18MN18M3DMD4MN51MN16MN45MN4MN31MN22MN2MN20MN58MN59MN54M2N8MN12M4I6MI26M2D3M6DMD53MN15MN6MN18MN6MN13MN21MN78MN50MN58MN9MN24MN101MN3MN11MN20MN92M2N48MI2MD11MN176MN2MN30MN65MN16MN13MN9MN3MN10MN15MND7M mismatches: 48 - insertions: 7 - deletions: 16
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
7
Length
2,092
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:149944508
      NM_021139
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      2,119 bp
    • E Value
      0E0
    • BLAST Score
      3,853.2 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_021139
      98.73% cov
    • Alignment Length
      2,092 bp
    • CIGAR string
      1848MN222MN20M mismatches: 2 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819651
      XM_001161846
    • Hit length
      2,494 bp
    • E Value
      0E0
    • BLAST Score
      3,779.4 bits
    • Similarity
      99.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001161846
      83.84% cov
    • Alignment Length
      2,092 bp
    • CIGAR string
      153MN74MN7MN138MN19MN789MN101MN106MN122MN74MN8MN68MN114MN62MN71MD171M mismatches: 14 - insertions: 0 - deletions: 1
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297673633
      XM_002814814
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      2,103 bp
    • E Value
      0E0
    • BLAST Score
      3,620.6 bits
    • Similarity
      97.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002814814
      99.48% cov
    • Alignment Length
      2,093 bp
    • CIGAR string
      115MN25MN82MN3MN18MN56MN28MN79MN9MN69MN25MN3MN113MN7MN14MN38MN71MN26MN104MN80MN120MN68MN4MN5MN80MN21MN31MN86MN50MN58MN9MN24MN101MN3MN11MN20MN92M2N48MI2MD11MN176MN2MN30MN32M mismatches: 42 - insertions: 1 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233090
      XM_003265688
    • Hit length
      2,102 bp
    • E Value
      0E0
    • BLAST Score
      3,513.4 bits
    • Similarity
      96.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003265688
      99.48% cov
    • Alignment Length
      2,094 bp
    • CIGAR string
      12MN22MN105MN29MN56MN42MN61MN61MN6MI2MD6MN47MN59MN3MN46MN14MN9MN41MN7MN68MN29MN8MN17MN26MN45MN40MN17MN23MN18MN22MN112MN48MN42MN4MN5MN102MN10MN107MN23MN26MN58MN13MN91MN11MN17M2N8MI7MN12MN7MN156MN3MN47MN4MN14MD22MN16MN25M2N13MNMD24MN28MN34M mismatches: 58 - insertions: 2 - deletions: 3
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297292794
      XM_001107708
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      2,217 bp
    • E Value
      0E0
    • BLAST Score
      2,941 bits
    • Similarity
      92.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_001107708
      94.5% cov
    • Alignment Length
      2,109 bp
    • CIGAR string
      3MN86MN50MN20MN8MN30MN6MN4MN8MD3MNMI10MN7MN14MN3MN3MDMNI9M2N18M3N3MN3MN15MN4MIMD3MN16MN2MN6MN3MN11MN10MNM2N6MIMD16MN3MNMN5MN53MN6MN3MN5MN9MN5MN3MN19MN30MN11MN7M2N22MN6MDMI10MN4MN2MN14MN5MN3MN14MN2MN10MN12MN3M2N2M2NMN5MN11MN29MN4MN5MN15MN41MN62MN17MN17MN29MN13MN18MN71MN16MN13MN25MN26MN20MN47MN20MN14MN14M2N8MN46MN41MN29MN50MN20MN37MN82MN10MN12MN3MN24M2N8MIMNMN3MN4MN2MD4M2N4MNMN14M2D16MN30MN4M2N3M6IMIMI17M2N14MIMD7MN13MN11MN9MN2MN3MN23MN18MI2MD7MN3MN10MD2MDMN19MD8M2N23MN6M2N6MN4MN7MN6MN13MN32MI3MD10MN10MN5M mismatches: 136 - insertions: 17 - deletions: 14
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:158052972
      AB362508
      1 of 3 hits reported for Macaca fascicularis.
    • Hit length
      2,225 bp
    • E Value
      0E0
    • BLAST Score
      2,926.2 bits
    • Similarity
      91.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AB362508
      94.2% cov
    • Alignment Length
      2,110 bp
    • CIGAR string
      3MN86MN50MN20MN8MN30MN6MN4MN8MD3MNMI10MN7MN14MN3MN3MDMNI9M2N18M3N3MN3MN15MN4MIMD3MN16MN2MN6MN3MN11MN10MNM2N6MIMD16MN3MNMN5MN53MN6MN3MN5MN9MN5MN3MN19MN30MN11MN7M2N22MN6MDMI10MN4MN2MN14MN5MN18MN2MN10MN12MN3M2N2M2NMN5MN11MN29MN4MN5MN15MN41MN62MN17MN17MN29MN13MN18MN71MN16MN13MN25MN26MN20MN47MN20MN14MN14M2N8MN24MN21MN9MN17MN13MN29MN50MN20MN36M2N82MN10MN12MN3MN24M2N8MIMNMN3MN4MN2MD4M2N4MNMN14M2D16MN30MN4M2N3M7IMIMI17M2N14MIMD7MN13MN11MN12MN3MN12MN10MN18MI2MD7MN3MN10MD2MDMN19MD9MN23MN6M2N6MN4MN7MN6MN13MN32MI3MD10MN10MN5M mismatches: 138 - insertions: 18 - deletions: 14
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123997054
      DQ895203
    • Hit length
      1,627 bp
    • E Value
      0E0
    • BLAST Score
      2,922.5 bits
    • Similarity
      99.94%
    • Coverage
      75.76%
    • Alignment (schematic)

      SEQ ID NO 7
      75.76% cov
      DQ895203
      97.42% cov
    • Alignment Length
      1,585 bp
    • CIGAR string
      37H1268MN316M470H mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
8
Length
528
Sequence Type
peptide
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:149944509
      NP_066962
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      528 aa
    • E Value
      0E0
    • BLAST Score
      1,095.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_066962
      100% cov
    • Alignment Length
      528 aa
    • CIGAR string
      528M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114594454
      XP_001161846
    • Hit length
      528 aa
    • E Value
      0E0
    • BLAST Score
      1,080.1 bits
    • Similarity
      99.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_001161846
      100% cov
    • Alignment Length
      528 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332233091
      XP_003265736
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      528 aa
    • E Value
      0E0
    • BLAST Score
      1,073.9 bits
    • Similarity
      99.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_003265736
      100% cov
    • Alignment Length
      528 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297673634
      XP_002814860
      1 of 3 hits reported for Pongo abelii.
    • Hit length
      528 aa
    • E Value
      0E0
    • BLAST Score
      1,072.4 bits
    • Similarity
      99.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_002814860
      100% cov
    • Alignment Length
      528 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109074627
      XP_001107708
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      528 aa
    • E Value
      0E0
    • BLAST Score
      989.9 bits
    • Similarity
      94.32%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XP_001107708
      100% cov
    • Alignment Length
      528 aa
  • Papio anubis

    Papio anubis

    • Public DB hit
      GI:288541317
      NP_001165611
      1 of 2 hits reported for Papio anubis.
    • Hit length
      528 aa
    • E Value
      0E0
    • BLAST Score
      987.6 bits
    • Similarity
      94.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_001165611
      100% cov
    • Alignment Length
      528 aa
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:8134780
      Q9XT55
    • Hit length
      528 aa
    • E Value
      0E0
    • BLAST Score
      984.2 bits
    • Similarity
      94.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      Q9XT55
      100% cov
    • Alignment Length
      528 aa
Occurrence
51 times in PatSeqDB
Tools
SEQ ID NO
9
Length
24
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
10
Length
21
Sequence Type
DNA
Locations
Summary
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:94717611
      DQ520733
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      19,657 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      DQ520733
      0.11% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Caenorhabditis remanei

    Caenorhabditis remanei

    • Public DB hit
      GI:308467938
      XM_003096166
    • Hit length
      762 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      XM_003096166
      2.49% cov
    • Alignment Length
      19 bp
  • Orangutan polyomavirus

    Orangutan polyomavirus

    • Public DB hit
      GI:260891807
      FN356900
    • Hit length
      5,168 bp
    • E Value
      3.98E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      90.48%
    • Alignment (schematic)

      SEQ ID NO 10
      90.48% cov
      FN356900
      0.37% cov
    • Alignment Length
      19 bp
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:334184372
      NM_001202648
      1 of 6 hits reported for Arabidopsis thaliana.
    • Hit length
      3,339 bp
    • E Value
      6.21E0
    • BLAST Score
      34.2 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_001202648
      0.63% cov
    • Alignment Length
      21 bp
Occurrence
5 times in PatSeqDB
Tools

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