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Search for Biological Sequences disclosed in Patents

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Data obtained from: USPTO Fulltext
5 sequences found in this patent (in total)

Displaying 5 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
8,106
Type
DNA
Locations
Claims, Detailed Description, Drawings, Summary

Declared organism:
Alphapapillomavirus 13

Determined organism:
  • Human papillomavirus type 83

    Human papillomavirus type 83

    • Public DB hit
      GI:5059324
      AF151983
      1 of 2 hits reported for Human papillomavirus type 83.
    • Hit length
      8,104 bp
    • E Value
      0E0
    • BLAST Score
      14,912.8 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF151983
      100% cov
    • Alignment Length
      8,108 bp
    • CIGAR string
      1251MD54MINM2N3226MD8MN3MD121MI3MD3431M mismatches: 4 - insertions: 2 - deletions: 4
  • Human papillomavirus type 102

    Human papillomavirus type 102

    • Public DB hit
      GI:71726718
      DQ080083
      1 of 2 hits reported for Human papillomavirus type 102.
    • Hit length
      8,078 bp
    • E Value
      0E0
    • BLAST Score
      6,220.6 bits
    • Similarity
      82.48%
    • Coverage
      89.49%
    • Alignment (schematic)

      SEQ ID NO 1
      89.49% cov
      DQ080083
      90.31% cov
    • Alignment Length
      7,430 bp
  • Human papillomavirus type 89

    Human papillomavirus type 89

    • Public DB hit
      GI:22095322
      AF436128
    • Hit length
      8,078 bp
    • E Value
      0E0
    • BLAST Score
      1,836.7 bits
    • Similarity
      75.82%
    • Coverage
      50.09%
    • Alignment (schematic)

      SEQ ID NO 1
      50.09% cov
      AF436128
      50.33% cov
    • Alignment Length
      4,230 bp
  • Human papillomavirus type 72

    Human papillomavirus type 72

    • Public DB hit
      GI:1491683
      X94164
    • Hit length
      7,988 bp
    • E Value
      0E0
    • BLAST Score
      1,323.3 bits
    • Similarity
      74.14%
    • Coverage
      45.84%
    • Alignment (schematic)

      SEQ ID NO 1
      45.84% cov
      X94164
      46.67% cov
    • Alignment Length
      3,875 bp
  • Alphapapillomavirus 3

    Alphapapillomavirus 3

    • Public DB hit
      GI:9628574
      NC_001694
    • Hit length
      7,989 bp
    • E Value
      0E0
    • BLAST Score
      1,308.5 bits
    • Similarity
      74.03%
    • Coverage
      45.93%
    • Alignment (schematic)

      SEQ ID NO 1
      45.93% cov
      NC_001694
      46.6% cov
    • Alignment Length
      3,870 bp
  • Human papillomavirus type 61

    Human papillomavirus type 61

    • Public DB hit
      GI:1020282
      U31793
    • Hit length
      7,989 bp
    • E Value
      0E0
    • BLAST Score
      1,308.5 bits
    • Similarity
      74.03%
    • Coverage
      45.93%
    • Alignment (schematic)

      SEQ ID NO 1
      45.93% cov
      U31793
      46.6% cov
    • Alignment Length
      3,870 bp
  • Human papillomavirus type 81

    Human papillomavirus type 81

    • Public DB hit
      GI:40804509
      AJ620209
      1 of 6 hits reported for Human papillomavirus type 81.
    • Hit length
      8,070 bp
    • E Value
      0E0
    • BLAST Score
      1,291.9 bits
    • Similarity
      74.41%
    • Coverage
      41.57%
    • Alignment (schematic)

      SEQ ID NO 1
      41.57% cov
      AJ620209
      41.81% cov
    • Alignment Length
      3,482 bp
  • Human papillomavirus type 114

    Human papillomavirus type 114

    • Public DB hit
      GI:289656451
      GQ244463
    • Hit length
      8,069 bp
    • E Value
      0E0
    • BLAST Score
      1,275.3 bits
    • Similarity
      74.46%
    • Coverage
      41.88%
    • Alignment (schematic)

      SEQ ID NO 1
      41.88% cov
      GQ244463
      41.96% cov
    • Alignment Length
      3,524 bp
  • Human papillomavirus type 84

    Human papillomavirus type 84

    • Public DB hit
      GI:12958167
      AF293960
    • Hit length
      7,948 bp
    • E Value
      0E0
    • BLAST Score
      1,229.1 bits
    • Similarity
      73.99%
    • Coverage
      44.44%
    • Alignment (schematic)

      SEQ ID NO 1
      44.44% cov
      AF293960
      45.09% cov
    • Alignment Length
      3,752 bp
  • Human papillomavirus type 87

    Human papillomavirus type 87

    • Public DB hit
      GI:14475578
      AJ400628
    • Hit length
      7,998 bp
    • E Value
      0E0
    • BLAST Score
      1,203.3 bits
    • Similarity
      74.4%
    • Coverage
      40.23%
    • Alignment (schematic)

      SEQ ID NO 1
      40.23% cov
      AJ400628
      40.47% cov
    • Alignment Length
      3,383 bp
  • Human papillomavirus type 86

    Human papillomavirus type 86

    • Public DB hit
      GI:15741127
      AF349909
    • Hit length
      7,983 bp
    • E Value
      0E0
    • BLAST Score
      1,164.5 bits
    • Similarity
      74.4%
    • Coverage
      39.25%
    • Alignment (schematic)

      SEQ ID NO 1
      39.25% cov
      AF349909
      39.75% cov
    • Alignment Length
      3,317 bp
  • Human papillomavirus type 62

    Human papillomavirus type 62

    • Public DB hit
      GI:39932599
      AY395706
      1 of 2 hits reported for Human papillomavirus type 62.
    • Hit length
      8,092 bp
    • E Value
      0E0
    • BLAST Score
      946.6 bits
    • Similarity
      74.49%
    • Coverage
      30.22%
    • Alignment (schematic)

      SEQ ID NO 1
      30.22% cov
      AY395706
      30.29% cov
    • Alignment Length
      2,532 bp
  • Human papillomavirus

    Human papillomavirus

    • Public DB hit
      GI:577376
      U12487
      1 of 5 hits reported for Human papillomavirus.
    • Hit length
      452 bp
    • E Value
      0E0
    • BLAST Score
      802.6 bits
    • Similarity
      98.89%
    • Coverage
      5.54%
    • Alignment (schematic)

      SEQ ID NO 1
      5.54% cov
      U12487
      99.34% cov
    • Alignment Length
      449 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
2
Length
452
Type
DNA
Locations
Drawings

Declared organism:
Alphapapillomavirus 13

Determined organism:
  • Human papillomavirus

    Human papillomavirus

    • Public DB hit
      GI:577380
      U12489
      1 of 9 hits reported for Human papillomavirus.
    • Hit length
      452 bp
    • E Value
      0E0
    • BLAST Score
      835.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      U12489
      100% cov
    • Alignment Length
      452 bp
    • CIGAR string
      452M mismatches: 0 - insertions: 0 - deletions: 0
  • Human papillomavirus type 83

    Human papillomavirus type 83

    • Public DB hit
      GI:5059324
      AF151983
    • Hit length
      8,104 bp
    • E Value
      0E0
    • BLAST Score
      791.5 bits
    • Similarity
      98.44%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 2
      99.34% cov
      AF151983
      5.54% cov
    • Alignment Length
      449 bp
  • Human papillomavirus type 102

    Human papillomavirus type 102

    • Public DB hit
      GI:151414933
      EF626591
      1 of 2 hits reported for Human papillomavirus type 102.
    • Hit length
      452 bp
    • E Value
      1.21E-121
    • BLAST Score
      448 bits
    • Similarity
      84.87%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 2
      99.34% cov
      EF626591
      99.34% cov
    • Alignment Length
      456 bp
  • Human papillomavirus type 81

    Human papillomavirus type 81

    • Public DB hit
      GI:151414931
      EF626590
      1 of 7 hits reported for Human papillomavirus type 81.
    • Hit length
      452 bp
    • E Value
      1.28E-81
    • BLAST Score
      315.1 bits
    • Similarity
      79.91%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 2
      99.34% cov
      EF626590
      99.34% cov
    • Alignment Length
      463 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
3
Length
452
Type
DNA
Locations
Drawings

Declared organism:
Alphapapillomavirus 13

Determined organism:
  • Human papillomavirus

    Human papillomavirus

    • Public DB hit
      GI:577376
      U12487
      1 of 9 hits reported for Human papillomavirus.
    • Hit length
      452 bp
    • E Value
      0E0
    • BLAST Score
      835.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      U12487
      100% cov
    • Alignment Length
      452 bp
    • CIGAR string
      452M mismatches: 0 - insertions: 0 - deletions: 0
  • Human papillomavirus type 83

    Human papillomavirus type 83

    • Public DB hit
      GI:5059324
      AF151983
    • Hit length
      8,104 bp
    • E Value
      0E0
    • BLAST Score
      802.6 bits
    • Similarity
      98.89%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 3
      99.34% cov
      AF151983
      5.54% cov
    • Alignment Length
      449 bp
    • CIGAR string
      8MN143MN47MN47MN63MN136M3H mismatches: 5 - insertions: 0 - deletions: 0
  • Human papillomavirus type 102

    Human papillomavirus type 102

    • Public DB hit
      GI:151414933
      EF626591
      1 of 2 hits reported for Human papillomavirus type 102.
    • Hit length
      452 bp
    • E Value
      2.59E-123
    • BLAST Score
      453.5 bits
    • Similarity
      85.09%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 3
      99.34% cov
      EF626591
      99.34% cov
    • Alignment Length
      456 bp
  • Human papillomavirus type 81

    Human papillomavirus type 81

    • Public DB hit
      GI:151414931
      EF626590
      1 of 7 hits reported for Human papillomavirus type 81.
    • Hit length
      452 bp
    • E Value
      5.9E-85
    • BLAST Score
      326.1 bits
    • Similarity
      80.35%
    • Coverage
      99.34%
    • Alignment (schematic)

      SEQ ID NO 3
      99.34% cov
      EF626590
      99.34% cov
    • Alignment Length
      463 bp
Occurrence
Tools
PatSeq Finder
SEQ ID NO
4
Length
41
Type
DNA
Locations
Detailed Description

Declared organism:
Alphapapillomavirus 13

Determined organism:
  • Human papillomavirus type 83

    Human papillomavirus type 83

    • Public DB hit
      GI:5059324
      AF151983
    • Hit length
      8,104 bp
    • E Value
      3.76E-6
    • BLAST Score
      60 bits
    • Similarity
      97.37%
    • Coverage
      90.24%
    • Alignment (schematic)

      SEQ ID NO 4
      90.24% cov
      AF151983
      0.47% cov
    • Alignment Length
      38 bp
    • CIGAR string
      4H17MI20M mismatches: 0 - insertions: 1 - deletions: 0
  • Human papillomavirus

    Human papillomavirus

    • Public DB hit
      GI:39837147
      AJ617551
      1 of 4 hits reported for Human papillomavirus.
    • Hit length
      452 bp
    • E Value
      3.76E-6
    • BLAST Score
      60 bits
    • Similarity
      97.37%
    • Coverage
      90.24%
    • Alignment (schematic)

      SEQ ID NO 4
      90.24% cov
      AJ617551
      8.41% cov
    • Alignment Length
      38 bp
    • CIGAR string
      4H17MI20M mismatches: 0 - insertions: 1 - deletions: 0
Occurrence
Tools
PatSeq Finder
SEQ ID NO
5
Length
35
Type
DNA
Locations
Detailed Description

Declared organism:
Alphapapillomavirus 13

Determined organism:
Occurrence
Tools
PatSeq Finder

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