US 8147833 B2 - Prevention And Treatment Of Synucleinopathic And Amyloidogenic Disease - The Lens

Prevention And Treatment Of Synucleinopathic And Amyloidogenic Disease

Published: Apr 3, 2012
Earliest Priority: Feb 23 2007
Family: 6
Cited Works: 99
Cited by: 9
Cites: 99
Sequences: 57
Additional Info: Cited Works Full text Published Sequence

Data obtained from: NCBI GenBank EMBL-EBI Pat USPTO Fulltext

57 sequences found in this patent (in total)

Download sequences in fasta format: 57 peptides

Displaying 1 - 10 of 57 sequences

SEQ ID NO

Length

Sequence Type

Locations

Declared organism

Determined organism

Occurrence

Tools

SEQ ID NO

Length

140

Sequence Type

peptide

Locations

Detailed Description, Summary

Declared organism

Homo sapiens

Determined organism

synthetic construct
synthetic construct
Public DB hit
GI:30584369
AAP36433

Hit length
141 aa

E Value
8.65E-71

BLAST Score
270.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AAP36433

99.29% cov

Alignment Length
140 aa

CIGAR string
140M mismatches: 0 - insertions: 0 - deletions: 0
Homo sapiens
Homo sapiens
Public DB hit
GI:4507109
NP_000336
1 of 2 hits reported for Homo sapiens.

Hit length
140 aa

E Value
9.4E-71

BLAST Score
270.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
NP_000336

100% cov

Alignment Length
140 aa

CIGAR string
140M mismatches: 0 - insertions: 0 - deletions: 0
Erythrocebus patas
Erythrocebus patas
Public DB hit
GI:47117057
P61139

Hit length
140 aa

E Value
1.66E-70

BLAST Score
269.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
P61139

100% cov

Alignment Length
140 aa

CIGAR string
113MN26M mismatches: 1 - insertions: 0 - deletions: 0
Macaca fascicularis
Macaca fascicularis
Public DB hit
GI:47117060
P61142

Hit length
140 aa

E Value
2.13E-70

BLAST Score
269.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
P61142

100% cov

Alignment Length
140 aa
Pongo abelii
Pongo abelii
Public DB hit
GI:207080186
NP_001129014

Hit length
140 aa

E Value
8.09E-70

BLAST Score
267.3 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
NP_001129014

100% cov

Alignment Length
140 aa
Nomascus leucogenys
Nomascus leucogenys
Public DB hit
GI:332216895
XP_003257587

Hit length
140 aa

E Value
2.13E-69

BLAST Score
265.8 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XP_003257587

100% cov

Alignment Length
140 aa
Saimiri sciureus
Saimiri sciureus
Public DB hit
GI:261036336
ACX54436

Hit length
140 aa

E Value
4.33E-69

BLAST Score
264.6 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
ACX54436

100% cov

Alignment Length
140 aa
Callithrix jacchus
Callithrix jacchus
Public DB hit
GI:296195995
XP_002745636

Hit length
140 aa

E Value
1.24E-68

BLAST Score
263.1 bits

Similarity

98.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XP_002745636

100% cov

Alignment Length
140 aa
Saguinus labiatus
Saguinus labiatus
Public DB hit
GI:47117065
P61147

Hit length
140 aa

E Value
1.3E-68

BLAST Score
263.1 bits

Similarity

98.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
P61147

100% cov

Alignment Length
140 aa
Sus scrofa
Sus scrofa
Public DB hit
GI:80861405
NP_001032222

Hit length
140 aa

E Value
2.37E-68

BLAST Score
262.3 bits

Similarity

97.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
NP_001032222

100% cov

Alignment Length
140 aa
Ateles geoffroyi
Ateles geoffroyi
Public DB hit
GI:47117056
P61138

Hit length
140 aa

E Value
3.37E-67

BLAST Score
258.5 bits

Similarity

97.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
P61138

100% cov

Alignment Length
140 aa
Canis lupus familiaris
Canis lupus familiaris
Public DB hit
GI:57109134
XP_535656

Hit length
140 aa

E Value
4.37E-67

BLAST Score
258.1 bits

Similarity

97.14%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XP_535656

100% cov

Alignment Length
140 aa
Rattus norvegicus
Rattus norvegicus
Public DB hit
GI:9507125
NP_062042

Hit length
140 aa

E Value
1.46E-66

BLAST Score
256.5 bits

Similarity

97.14%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
NP_062042

100% cov

Alignment Length
140 aa
Mus musculus
Mus musculus
Public DB hit
GI:148666340
EDK98756
1 of 2 hits reported for Mus musculus.

Hit length
151 aa

E Value
2.01E-66

BLAST Score
255.8 bits

Similarity

97.14%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
EDK98756

92.72% cov

Alignment Length
140 aa
Oryctolagus cuniculus
Oryctolagus cuniculus
Public DB hit
GI:291401434
XP_002717046

Hit length
140 aa

E Value
4.79E-66

BLAST Score
254.6 bits

Similarity

97.14%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
XP_002717046

100% cov

Alignment Length
140 aa

Occurrence

934 times in PatSeqDB

in 166 extended families
(52 referenced in claims)
in 195 simple families
(62 referenced in claims)
in 707 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Detailed Description, Drawings

Declared organism

Homo sapiens

Determined organism

Homo sapiens
Homo sapiens
Public DB hit
GI:556212
AAA98493
1 of 4 hits reported for Homo sapiens.

Hit length
126 aa

E Value
6.29E-9

BLAST Score
65.1 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
AAA98493

27.78% cov

Alignment Length
35 aa

CIGAR string
35M mismatches: 0 - insertions: 0 - deletions: 0
Nomascus leucogenys
Nomascus leucogenys
Public DB hit
GI:332216895
XP_003257587

Hit length
140 aa

E Value
7.13E-9

BLAST Score
64.7 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
XP_003257587

25% cov

Alignment Length
35 aa

CIGAR string
35M mismatches: 0 - insertions: 0 - deletions: 0
synthetic construct
synthetic construct
Public DB hit
GI:30584369
AAP36433

Hit length
141 aa

E Value
7.5E-9

BLAST Score
64.7 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
AAP36433

24.82% cov

Alignment Length
35 aa

CIGAR string
35M mismatches: 0 - insertions: 0 - deletions: 0
Erythrocebus patas
Erythrocebus patas
Public DB hit
GI:47117057
P61139

Hit length
140 aa

E Value
8.08E-9

BLAST Score
64.7 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
P61139

25% cov

Alignment Length
35 aa
Pongo abelii
Pongo abelii
Public DB hit
GI:207080186
NP_001129014

Hit length
140 aa

E Value
8.29E-9

BLAST Score
64.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
NP_001129014

25% cov

Alignment Length
35 aa
Macaca mulatta
Macaca mulatta
Public DB hit
GI:297293021
XP_001095402

Hit length
130 aa

E Value
8.36E-9

BLAST Score
64.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
XP_001095402

26.92% cov

Alignment Length
35 aa
Chelonoidis nigra
Chelonoidis nigra
Public DB hit
GI:241864979
ACS68570

Hit length
125 aa

E Value
8.79E-9

BLAST Score
64.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACS68570

28% cov

Alignment Length
35 aa
Macaca fascicularis
Macaca fascicularis
Public DB hit
GI:47117060
P61142

Hit length
140 aa

E Value
9.63E-9

BLAST Score
64.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
P61142

25% cov

Alignment Length
35 aa
Rattus sp.
Rattus sp.
Public DB hit
GI:241081
AAB20689

Hit length
149 aa

E Value
1.74E-8

BLAST Score
63.5 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
AAB20689

23.49% cov

Alignment Length
35 aa
Saguinus labiatus
Saguinus labiatus
Public DB hit
GI:47117065
P61147

Hit length
140 aa

E Value
1.91E-8

BLAST Score
63.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
P61147

25% cov

Alignment Length
35 aa
Callithrix jacchus
Callithrix jacchus
Public DB hit
GI:296195995
XP_002745636

Hit length
140 aa

E Value
1.93E-8

BLAST Score
63.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
XP_002745636

25% cov

Alignment Length
35 aa
Saimiri sciureus
Saimiri sciureus
Public DB hit
GI:261036336
ACX54436

Hit length
140 aa

E Value
1.93E-8

BLAST Score
63.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACX54436

25% cov

Alignment Length
35 aa
Rattus norvegicus
Rattus norvegicus
Public DB hit
GI:9507125
NP_062042

Hit length
140 aa

E Value
1.97E-8

BLAST Score
63.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
NP_062042

25% cov

Alignment Length
35 aa
Mus musculus
Mus musculus
Public DB hit
GI:6678047
NP_033247

Hit length
140 aa

E Value
2.18E-8

BLAST Score
63.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
NP_033247

25% cov

Alignment Length
35 aa

Occurrence

153 times in PatSeqDB

in 14 extended families
in 28 simple families
in 124 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Detailed Description, Drawings

Declared organism

Homo sapiens

Determined organism

Macaca mulatta
Macaca mulatta
Public DB hit
GI:297293021
XP_001095402

Hit length
130 aa

E Value
2.65E-5

BLAST Score
52.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
XP_001095402

21.54% cov

Alignment Length
28 aa

CIGAR string
28M mismatches: 0 - insertions: 0 - deletions: 0
Homo sapiens
Homo sapiens
Public DB hit
GI:556212
AAA98493
1 of 6 hits reported for Homo sapiens.

Hit length
126 aa

E Value
3.16E-5

BLAST Score
52.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AAA98493

22.22% cov

Alignment Length
28 aa

CIGAR string
28M mismatches: 0 - insertions: 0 - deletions: 0
Macaca fascicularis
Macaca fascicularis
Public DB hit
GI:47117060
P61142

Hit length
140 aa

E Value
3.68E-5

BLAST Score
52.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
P61142

20% cov

Alignment Length
28 aa

CIGAR string
28M mismatches: 0 - insertions: 0 - deletions: 0
Nomascus leucogenys
Nomascus leucogenys
Public DB hit
GI:332216895
XP_003257587

Hit length
140 aa

E Value
3.77E-5

BLAST Score
52.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
XP_003257587

20% cov

Alignment Length
28 aa
synthetic construct
synthetic construct
Public DB hit
GI:30584369
AAP36433

Hit length
141 aa

E Value
3.83E-5

BLAST Score
52.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AAP36433

19.86% cov

Alignment Length
28 aa
Erythrocebus patas
Erythrocebus patas
Public DB hit
GI:47117057
P61139

Hit length
140 aa

E Value
3.9E-5

BLAST Score
52.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
P61139

20% cov

Alignment Length
28 aa
Pongo abelii
Pongo abelii
Public DB hit
GI:207080186
NP_001129014

Hit length
140 aa

E Value
4.1E-5

BLAST Score
52.4 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
NP_001129014

20% cov

Alignment Length
28 aa
Chelonoidis nigra
Chelonoidis nigra
Public DB hit
GI:241864979
ACS68570

Hit length
125 aa

E Value
4.6E-5

BLAST Score
52 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
ACS68570

22.4% cov

Alignment Length
28 aa
Rattus sp.
Rattus sp.
Public DB hit
GI:241081
AAB20689

Hit length
149 aa

E Value
8.61E-5

BLAST Score
51.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AAB20689

18.79% cov

Alignment Length
28 aa
Saimiri sciureus
Saimiri sciureus
Public DB hit
GI:261036336
ACX54436

Hit length
140 aa

E Value
9.76E-5

BLAST Score
50.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
ACX54436

20% cov

Alignment Length
28 aa
Saguinus labiatus
Saguinus labiatus
Public DB hit
GI:47117065
P61147

Hit length
140 aa

E Value
1.02E-4

BLAST Score
50.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
P61147

20% cov

Alignment Length
28 aa
Callithrix jacchus
Callithrix jacchus
Public DB hit
GI:296195995
XP_002745636

Hit length
140 aa

E Value
1.03E-4

BLAST Score
50.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
XP_002745636

20% cov

Alignment Length
28 aa
Rattus norvegicus
Rattus norvegicus
Public DB hit
GI:9507125
NP_062042

Hit length
140 aa

E Value
1.05E-4

BLAST Score
50.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
NP_062042

20% cov

Alignment Length
28 aa
Mus musculus
Mus musculus
Public DB hit
GI:6678047
NP_033247

Hit length
140 aa

E Value
1.12E-4

BLAST Score
50.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
NP_033247

20% cov

Alignment Length
28 aa

Occurrence

94 times in PatSeqDB

in 8 extended families
in 19 simple families
in 90 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Undetermined

Declared organism

unidentified influenza virus

Determined organism

Influenza A virus (A/canine/Korea/1/2010(H3N1))
Influenza A virus (A/canine/Korea/1/2010(H3N1))
Public DB hit
GI:332078623
AED99981

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
AED99981

2.3% cov

Alignment Length
13 aa

CIGAR string
13M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/mallard/Czech Republic/13577-24K/2010(H3N8))
Influenza A virus (A/mallard/Czech Republic/13577-24K/2010(H3N8))
Public DB hit
GI:329315479
AEB89865

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
AEB89865

2.3% cov

Alignment Length
13 aa

CIGAR string
13M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/chicken/Vietnam/G14/2008(H3N8))
Influenza A virus (A/chicken/Vietnam/G14/2008(H3N8))
Public DB hit
GI:327442228
BAK18416

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
BAK18416

2.3% cov

Alignment Length
13 aa

CIGAR string
13M mismatches: 0 - insertions: 0 - deletions: 0
Influenza A virus (A/duck/Vietnam/G119/2006(H3N8))
Influenza A virus (A/duck/Vietnam/G119/2006(H3N8))
Public DB hit
GI:327442171
BAK18383

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
BAK18383

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/mallard/Czech Republic/14516/2007(H3N8))
Influenza A virus (A/mallard/Czech Republic/14516/2007(H3N8))
Public DB hit
GI:326458190
ADZ75338

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADZ75338

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/duck/Hokkaido/5/1977(H3N2))
Influenza A virus (A/duck/Hokkaido/5/1977(H3N2))
Public DB hit
GI:322250179
BAF34924

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
BAF34924

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/chicken/Guangxi/2117/2010(H3N8))
Influenza A virus (A/chicken/Guangxi/2117/2010(H3N8))
Public DB hit
GI:319655514
ADV58287

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADV58287

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/Hong Kong/1-10-MA21-1/1968(H3N2))
Influenza A virus (A/Hong Kong/1-10-MA21-1/1968(H3N2))
Public DB hit
GI:319899633
ADV76673

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADV76673

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/duck/Korea/D130/2007(H3N8))
Influenza A virus (A/duck/Korea/D130/2007(H3N8))
Public DB hit
GI:307068993
ADN23916

Hit length
454 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADN23916

2.86% cov

Alignment Length
13 aa
Influenza A virus (A/duck/Korea/D126/2007(H3N6))
Influenza A virus (A/duck/Korea/D126/2007(H3N6))
Public DB hit
GI:307068991
ADN23915

Hit length
454 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADN23915

2.86% cov

Alignment Length
13 aa
Influenza A virus (A/duck/Korea/D43/2007(H3N2))
Influenza A virus (A/duck/Korea/D43/2007(H3N2))
Public DB hit
GI:307068989
ADN23914

Hit length
454 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADN23914

2.86% cov

Alignment Length
13 aa
Influenza A virus (A/duck/Korea/D42/2007(H3N2))
Influenza A virus (A/duck/Korea/D42/2007(H3N2))
Public DB hit
GI:307068987
ADN23913

Hit length
454 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADN23913

2.86% cov

Alignment Length
13 aa
Influenza A virus (A/northern pintail/Interior Alaska/7MP2248/2007(mixed))
Influenza A virus (A/northern pintail/Interior Alaska/7MP2248/2007(mixed))
Public DB hit
GI:315507019
ADU33141

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU33141

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/avian/Japan/8KI0040/2008(H3N5))
Influenza A virus (A/avian/Japan/8KI0040/2008(H3N5))
Public DB hit
GI:315424622
ADU17557

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU17557

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/avian/Japan/8KI0162/2008(H3N8))
Influenza A virus (A/avian/Japan/8KI0162/2008(H3N8))
Public DB hit
GI:315424507
ADU17492

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU17492

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/northern pintail/Interior Alaska/7MP0408/2007(H3N8))
Influenza A virus (A/northern pintail/Interior Alaska/7MP0408/2007(H3N8))
Public DB hit
GI:315423005
ADU16971

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU16971

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/American wigeon/Interior Alaska/7MP1726/2007(H3N8))
Influenza A virus (A/American wigeon/Interior Alaska/7MP1726/2007(H3N8))
Public DB hit
GI:315422948
ADU16938

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU16938

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/mallard/Interior Alaska/6MP0124/2006(H3N8))
Influenza A virus (A/mallard/Interior Alaska/6MP0124/2006(H3N8))
Public DB hit
GI:315422871
ADU16894

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU16894

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/mallard/Interior Alaska/6MP0952/2006(H3N6))
Influenza A virus (A/mallard/Interior Alaska/6MP0952/2006(H3N6))
Public DB hit
GI:315422143
ADU16554

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU16554

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/mallard/Interior Alaska/6MP0155/2006(H3N8))
Influenza A virus (A/mallard/Interior Alaska/6MP0155/2006(H3N8))
Public DB hit
GI:315421008
ADU15985

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADU15985

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/swine/Brabant/1984(H3N2))
Influenza A virus (A/swine/Brabant/1984(H3N2))
Public DB hit
GI:315079751
ADT79182

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADT79182

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/swine/Italy/6/1981(H3N2))
Influenza A virus (A/swine/Italy/6/1981(H3N2))
Public DB hit
GI:315078756
ADT79161

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADT79161

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/swine/Italy/526/1985(H3N2))
Influenza A virus (A/swine/Italy/526/1985(H3N2))
Public DB hit
GI:315078254
ADT79150

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADT79150

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/duck/Guangxi/69/2009(H3N8))
Influenza A virus (A/duck/Guangxi/69/2009(H3N8))
Public DB hit
GI:312983354
ADR30454

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADR30454

2.3% cov

Alignment Length
13 aa
Influenza A virus (A/feline/Korea/01/2010(H3N2))
Influenza A virus (A/feline/Korea/01/2010(H3N2))
Public DB hit
GI:308052764
ADO00848

Hit length
566 aa

E Value
5.13E-3

BLAST Score
43.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ADO00848

2.3% cov

Alignment Length
13 aa

Occurrence

1065 times in PatSeqDB

in 150 extended families
(15 referenced in claims)
in 212 simple families
(15 referenced in claims)
in 782 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Undetermined

Declared organism

Plasmodium sp.

Determined organism

Occurrence

204 times in PatSeqDB

in 14 extended families
(3 referenced in claims)
in 38 simple families
(3 referenced in claims)
in 195 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Undetermined

Declared organism

Hepatitis B virus

Determined organism

Occurrence

219 times in PatSeqDB

in 20 extended families
(5 referenced in claims)
in 47 simple families
(5 referenced in claims)
in 203 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Undetermined

Declared organism

Homo sapiens

Determined organism

Mycobacterium tuberculosis
Mycobacterium tuberculosis
Public DB hit
GI:335389877
AEH57641

Hit length
127 aa

E Value
6.28E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
AEH57641

14.96% cov

Alignment Length
19 aa

CIGAR string
19M mismatches: 0 - insertions: 0 - deletions: 0
Mycobacterium marseillense
Mycobacterium marseillense
Public DB hit
GI:311698165
ADQ00377
1 of 2 hits reported for Mycobacterium marseillense.

Hit length
120 aa

E Value
6.28E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADQ00377

15.83% cov

Alignment Length
19 aa

CIGAR string
19M mismatches: 0 - insertions: 0 - deletions: 0
Mycobacterium mantenii
Mycobacterium mantenii
Public DB hit
GI:294335541
ADE62312

Hit length
113 aa

E Value
6.28E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADE62312

16.81% cov

Alignment Length
19 aa

CIGAR string
19M mismatches: 0 - insertions: 0 - deletions: 0
Mycobacterium parascrofulaceum
Mycobacterium parascrofulaceum
Public DB hit
GI:282721687
ADA84066

Hit length
115 aa

E Value
6.34E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADA84066

16.52% cov

Alignment Length
19 aa
Mycobacterium malmoense
Mycobacterium malmoense
Public DB hit
GI:327323272
AEA49024

Hit length
137 aa

E Value
6.39E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
AEA49024

13.87% cov

Alignment Length
19 aa
Mycobacterium celatum
Mycobacterium celatum
Public DB hit
GI:322227717
ADW95272

Hit length
118 aa

E Value
6.44E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADW95272

16.1% cov

Alignment Length
19 aa
Mycobacterium sp. GR-4208
Mycobacterium sp. GR-4208
Public DB hit
GI:262478147
ACY68262

Hit length
137 aa

E Value
6.5E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ACY68262

13.87% cov

Alignment Length
19 aa
Mycobacterium interjectum
Mycobacterium interjectum
Public DB hit
GI:322227703
ADW95265

Hit length
125 aa

E Value
6.55E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADW95265

15.2% cov

Alignment Length
19 aa
Mycobacterium ulcerans
Mycobacterium ulcerans
Public DB hit
GI:306407974
BAJ16487

Hit length
133 aa

E Value
6.55E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
BAJ16487

14.29% cov

Alignment Length
19 aa
Mycobacterium abscessus subsp. bolletii
Mycobacterium abscessus subsp. bolletii
Public DB hit
GI:308212662
ADO21584

Hit length
121 aa

E Value
6.61E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADO21584

15.7% cov

Alignment Length
19 aa
Mycobacterium monacense
Mycobacterium monacense
Public DB hit
GI:299013543
ADJ00330

Hit length
123 aa

E Value
6.61E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADJ00330

15.45% cov

Alignment Length
19 aa
Mycobacterium intracellulare
Mycobacterium intracellulare
Public DB hit
GI:294335543
ADE62313
1 of 2 hits reported for Mycobacterium intracellulare.

Hit length
121 aa

E Value
6.61E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADE62313

15.7% cov

Alignment Length
19 aa
Mycobacterium gordonae
Mycobacterium gordonae
Public DB hit
GI:285029133
ADC34817
1 of 2 hits reported for Mycobacterium gordonae.

Hit length
120 aa

E Value
6.61E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADC34817

15.83% cov

Alignment Length
19 aa
Mycobacterium kansasii
Mycobacterium kansasii
Public DB hit
GI:308212668
ADO21587

Hit length
113 aa

E Value
6.72E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADO21587

16.81% cov

Alignment Length
19 aa
Mycobacterium salmoniphilum
Mycobacterium salmoniphilum
Public DB hit
GI:256014662
ACU56879
1 of 2 hits reported for Mycobacterium salmoniphilum.

Hit length
107 aa

E Value
6.77E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ACU56879

17.76% cov

Alignment Length
19 aa
Mycobacterium shimoidei
Mycobacterium shimoidei
Public DB hit
GI:327493935
AEA91348

Hit length
133 aa

E Value
6.83E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
AEA91348

14.29% cov

Alignment Length
19 aa
Mycobacterium kumamotonense
Mycobacterium kumamotonense
Public DB hit
GI:322227720
ADW95273

Hit length
120 aa

E Value
6.83E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADW95273

15.83% cov

Alignment Length
19 aa
Mycobacterium bohemicum
Mycobacterium bohemicum
Public DB hit
GI:322227705
ADW95266

Hit length
128 aa

E Value
6.83E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADW95266

14.84% cov

Alignment Length
19 aa
Mycobacterium chimaera
Mycobacterium chimaera
Public DB hit
GI:322227699
ADW95263

Hit length
124 aa

E Value
6.83E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADW95263

15.32% cov

Alignment Length
19 aa
Mycobacterium abscessus
Mycobacterium abscessus
Public DB hit
GI:311698163
ADQ00376

Hit length
125 aa

E Value
6.89E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADQ00376

15.2% cov

Alignment Length
19 aa
Mycobacterium avium complex
Mycobacterium avium complex
Public DB hit
GI:296936569
ADH94304

Hit length
214 aa

E Value
6.89E-2

BLAST Score
41.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
ADH94304

8.88% cov

Alignment Length
19 aa

Occurrence

186 times in PatSeqDB

in 12 extended families
(1 referenced in claims)
in 36 simple families
(1 referenced in claims)
in 179 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Undetermined

Declared organism

Mycobacterium bovis

Determined organism

Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
Public DB hit
GI:49258446
1PC3_A

Hit length
350 aa

E Value
4.44E-4

BLAST Score
47.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
1PC3_A

4% cov

Alignment Length
14 aa

CIGAR string
14M mismatches: 0 - insertions: 0 - deletions: 0
Mycobacterium tuberculosis '98-R604 INH-RIF-EM'
Mycobacterium tuberculosis '98-R604 INH-RIF-EM'
Public DB hit
GI:254549915
ZP_05140362

Hit length
374 aa

E Value
4.87E-4

BLAST Score
47.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ZP_05140362

3.74% cov

Alignment Length
14 aa

CIGAR string
14M mismatches: 0 - insertions: 0 - deletions: 0
Mycobacterium tuberculosis C
Mycobacterium tuberculosis C
Public DB hit
GI:254231243
ZP_04924570
1 of 2 hits reported for Mycobacterium tuberculosis C.

Hit length
374 aa

E Value
5E-4

BLAST Score
47.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ZP_04924570

3.74% cov

Alignment Length
14 aa

CIGAR string
14M mismatches: 0 - insertions: 0 - deletions: 0
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis CDC1551
Public DB hit
GI:15840357
NP_335394
1 of 2 hits reported for Mycobacterium tuberculosis CDC1551.

Hit length
374 aa

E Value
5E-4

BLAST Score
47.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
NP_335394

3.74% cov

Alignment Length
14 aa
Mycobacterium tuberculosis EAS054
Mycobacterium tuberculosis EAS054
Public DB hit
GI:215429795
ZP_03427714

Hit length
374 aa

E Value
5.05E-4

BLAST Score
47.3 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ZP_03427714

3.74% cov

Alignment Length
14 aa
Mycobacterium bovis AF2122/97
Mycobacterium bovis AF2122/97
Public DB hit
GI:31792123
NP_854616

Hit length
374 aa

E Value
6.14E-3

BLAST Score
43.5 bits

Similarity

92.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
NP_854616

3.74% cov

Alignment Length
14 aa

Occurrence

228 times in PatSeqDB

in 15 extended families
(3 referenced in claims)
in 39 simple families
(3 referenced in claims)
in 217 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Undetermined

Declared organism

Clostridium tetani

Determined organism

Occurrence

672 times in PatSeqDB

in 127 extended families
(35 referenced in claims)
in 169 simple families
(36 referenced in claims)
in 609 documents

Tools

SEQ ID NO

Length

Sequence Type

peptide

Locations

Undetermined

Declared organism

Clostridium tetani

Determined organism

Occurrence

774 times in PatSeqDB

in 145 extended families
(37 referenced in claims)
in 186 simple families
(38 referenced in claims)
in 719 documents

Tools

57 sequences found in this patent (in total)

Filter sequences

Displaying 1 - 10 of 57 sequences

synthetic construct

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Homo sapiens

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Erythrocebus patas

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Macaca fascicularis

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Pongo abelii

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Nomascus leucogenys

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Saimiri sciureus

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Callithrix jacchus

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Saguinus labiatus

Public DB hit