Enhanced Sleeping Beauty Transposon System And Methods For Using The Same

  • Published: Jan 6, 2005
  • Earliest Priority: Jun 04 2003
  • Family: 2
  • Cited Works: 0
  • Cited by: 35
  • Cites: 6
  • Sequences: 17
  • Additional Info: Full text
Data obtained from: USPTO Fulltext
17 sequences found in this patent (in total)

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Displaying 1 - 10 of 17 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
340
Sequence Type
peptide
Locations
Claims, Detailed Description, Summary
Declared organism
salmonid
Determined organism
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
2
Length
226
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
  • Tanichthys albonubes

    Tanichthys albonubes

    • Public DB hit
      GI:1332397
      L48685
    • Hit length
      1,455 bp
    • E Value
      8.45E-114
    • BLAST Score
      418.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      L48685
      15.53% cov
    • Alignment Length
      226 bp
    • CIGAR string
      226M mismatches: 0 - insertions: 0 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-2

    PiggyBac transposon gene trap vector PBGTV1-2

    • Public DB hit
      GI:226433907
      FJ495179
    • Hit length
      9,022 bp
    • E Value
      3.93E-112
    • BLAST Score
      412.9 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FJ495179
      2.5% cov
    • Alignment Length
      226 bp
    • CIGAR string
      62MN163M mismatches: 1 - insertions: 0 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-1

    PiggyBac transposon gene trap vector PBGTV1-1

    • Public DB hit
      GI:226433906
      FJ495178
    • Hit length
      9,021 bp
    • E Value
      3.93E-112
    • BLAST Score
      412.9 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FJ495178
      2.51% cov
    • Alignment Length
      226 bp
    • CIGAR string
      62MN163M mismatches: 1 - insertions: 0 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-0

    PiggyBac transposon gene trap vector PBGTV1-0

    • Public DB hit
      GI:226433905
      FJ495177
    • Hit length
      9,020 bp
    • E Value
      3.93E-112
    • BLAST Score
      412.9 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FJ495177
      2.51% cov
    • Alignment Length
      226 bp
  • Salmo salar

    Salmo salar

    • Public DB hit
      GI:163955243
      AC203446
      1 of 16 hits reported for Salmo salar.
    • Hit length
      218,491 bp
    • E Value
      1.86E-100
    • BLAST Score
      374.1 bits
    • Similarity
      96.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AC203446
      0.1% cov
    • Alignment Length
      227 bp
  • Salvelinus namaycush

    Salvelinus namaycush

    • Public DB hit
      GI:4102912
      AF017232
      1 of 2 hits reported for Salvelinus namaycush.
    • Hit length
      1,639 bp
    • E Value
      1.86E-100
    • BLAST Score
      374.1 bits
    • Similarity
      96.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AF017232
      13.79% cov
    • Alignment Length
      226 bp
  • Oncorhynchus mykiss

    Oncorhynchus mykiss

    • Public DB hit
      GI:76445921
      DQ156151
    • Hit length
      96,442 bp
    • E Value
      1.87E-95
    • BLAST Score
      357.5 bits
    • Similarity
      95.52%
    • Coverage
      98.67%
    • Alignment (schematic)

      SEQ ID NO 2
      98.67% cov
      DQ156151
      0.23% cov
    • Alignment Length
      223 bp
  • Coregonus clupeaformis

    Coregonus clupeaformis

    • Public DB hit
      GI:317119968
      HQ287746
    • Hit length
      67,946 bp
    • E Value
      8.69E-94
    • BLAST Score
      352 bits
    • Similarity
      94.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      HQ287746
      0.33% cov
    • Alignment Length
      226 bp
  • Oncorhynchus masou

    Oncorhynchus masou

    • Public DB hit
      GI:117414076
      AB212764
    • Hit length
      3,728 bp
    • E Value
      8.69E-94
    • BLAST Score
      352 bits
    • Similarity
      94.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AB212764
      6.06% cov
    • Alignment Length
      227 bp
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
3
Length
228
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
  • PiggyBac transposon gene trap vector PBGTV1-2

    PiggyBac transposon gene trap vector PBGTV1-2

    • Public DB hit
      GI:226433907
      FJ495179
    • Hit length
      9,022 bp
    • E Value
      3.07E-113
    • BLAST Score
      416.6 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FJ495179
      2.54% cov
    • Alignment Length
      229 bp
    • CIGAR string
      187MI41M mismatches: 0 - insertions: 1 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-1

    PiggyBac transposon gene trap vector PBGTV1-1

    • Public DB hit
      GI:226433906
      FJ495178
    • Hit length
      9,021 bp
    • E Value
      3.07E-113
    • BLAST Score
      416.6 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FJ495178
      2.54% cov
    • Alignment Length
      229 bp
    • CIGAR string
      187MI41M mismatches: 0 - insertions: 1 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-0

    PiggyBac transposon gene trap vector PBGTV1-0

    • Public DB hit
      GI:226433905
      FJ495177
    • Hit length
      9,020 bp
    • E Value
      3.07E-113
    • BLAST Score
      416.6 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FJ495177
      2.54% cov
    • Alignment Length
      229 bp
    • CIGAR string
      187MI41M mismatches: 0 - insertions: 1 - deletions: 0
  • Tanichthys albonubes

    Tanichthys albonubes

    • Public DB hit
      GI:1332397
      L48685
    • Hit length
      1,455 bp
    • E Value
      3.07E-113
    • BLAST Score
      416.6 bits
    • Similarity
      99.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      L48685
      15.74% cov
    • Alignment Length
      229 bp
    • CIGAR string
      187MI41M mismatches: 0 - insertions: 1 - deletions: 0
  • Salmo salar

    Salmo salar

    • Public DB hit
      GI:148362118
      EF427378
      1 of 19 hits reported for Salmo salar.
    • Hit length
      145,068 bp
    • E Value
      1.46E-96
    • BLAST Score
      361.2 bits
    • Similarity
      95.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EF427378
      0.16% cov
    • Alignment Length
      229 bp
    • CIGAR string
      12MN47MN26MN34MN6MN2MD9MN6MN27MN9MI8MN32M mismatches: 9 - insertions: 1 - deletions: 1
  • Salvelinus namaycush

    Salvelinus namaycush

    • Public DB hit
      GI:4102912
      AF017232
      1 of 2 hits reported for Salvelinus namaycush.
    • Hit length
      1,639 bp
    • E Value
      6.79E-95
    • BLAST Score
      355.7 bits
    • Similarity
      94.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF017232
      13.91% cov
    • Alignment Length
      230 bp
    • CIGAR string
      12MN47MN26MN34MN6MN2MD9MI3MD3MN27MN9MI11MN29M mismatches: 8 - insertions: 2 - deletions: 2
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
4
Length
29
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
  • Salmo salar

    Salmo salar

    • Public DB hit
      GI:159147122
      EU221176
    • Hit length
      219,415 bp
    • E Value
      1.28E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EU221176
      0.01% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
21 times in PatSeqDB
Tools
SEQ ID NO
5
Length
30
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
  • Coregonus clupeaformis

    Coregonus clupeaformis

    • Public DB hit
      GI:317119968
      HQ287746
    • Hit length
      67,946 bp
    • E Value
      1.43E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      96.67%
    • Alignment (schematic)

      SEQ ID NO 5
      96.67% cov
      HQ287746
      0.04% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Salmo salar

    Salmo salar

    • Public DB hit
      GI:299773491
      HM159473
      1 of 19 hits reported for Salmo salar.
    • Hit length
      210,212 bp
    • E Value
      1.43E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      96.67%
    • Alignment (schematic)

      SEQ ID NO 5
      96.67% cov
      HM159473
      0.01% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Oncorhynchus mykiss

    Oncorhynchus mykiss

    • Public DB hit
      GI:306494795
      HM210571
      1 of 2 hits reported for Oncorhynchus mykiss.
    • Hit length
      91,249 bp
    • E Value
      1.43E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      96.67%
    • Alignment (schematic)

      SEQ ID NO 5
      96.67% cov
      HM210571
      0.03% cov
    • Alignment Length
      29 bp
    • CIGAR string
      29M1H mismatches: 0 - insertions: 0 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-2

    PiggyBac transposon gene trap vector PBGTV1-2

    • Public DB hit
      GI:226433907
      FJ495179
    • Hit length
      9,022 bp
    • E Value
      1.43E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      96.67%
    • Alignment (schematic)

      SEQ ID NO 5
      96.67% cov
      FJ495179
      0.32% cov
    • Alignment Length
      29 bp
  • PiggyBac transposon gene trap vector PBGTV1-1

    PiggyBac transposon gene trap vector PBGTV1-1

    • Public DB hit
      GI:226433906
      FJ495178
    • Hit length
      9,021 bp
    • E Value
      1.43E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      96.67%
    • Alignment (schematic)

      SEQ ID NO 5
      96.67% cov
      FJ495178
      0.32% cov
    • Alignment Length
      29 bp
  • PiggyBac transposon gene trap vector PBGTV1-0

    PiggyBac transposon gene trap vector PBGTV1-0

    • Public DB hit
      GI:226433905
      FJ495177
    • Hit length
      9,020 bp
    • E Value
      1.43E-6
    • BLAST Score
      58 bits
    • Similarity
      100%
    • Coverage
      96.67%
    • Alignment (schematic)

      SEQ ID NO 5
      96.67% cov
      FJ495177
      0.32% cov
    • Alignment Length
      29 bp
Occurrence
25 times in PatSeqDB
Tools
SEQ ID NO
6
Length
31
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
  • PiggyBac transposon gene trap vector PBGTV1-2

    PiggyBac transposon gene trap vector PBGTV1-2

    • Public DB hit
      GI:226433907
      FJ495179
    • Hit length
      9,022 bp
    • E Value
      1.01E-7
    • BLAST Score
      61.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FJ495179
      0.34% cov
    • Alignment Length
      31 bp
    • CIGAR string
      31M mismatches: 0 - insertions: 0 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-1

    PiggyBac transposon gene trap vector PBGTV1-1

    • Public DB hit
      GI:226433906
      FJ495178
    • Hit length
      9,021 bp
    • E Value
      1.01E-7
    • BLAST Score
      61.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FJ495178
      0.34% cov
    • Alignment Length
      31 bp
    • CIGAR string
      31M mismatches: 0 - insertions: 0 - deletions: 0
  • PiggyBac transposon gene trap vector PBGTV1-0

    PiggyBac transposon gene trap vector PBGTV1-0

    • Public DB hit
      GI:226433905
      FJ495177
    • Hit length
      9,020 bp
    • E Value
      1.01E-7
    • BLAST Score
      61.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FJ495177
      0.34% cov
    • Alignment Length
      31 bp
    • CIGAR string
      31M mismatches: 0 - insertions: 0 - deletions: 0
  • Tanichthys albonubes

    Tanichthys albonubes

    • Public DB hit
      GI:1332397
      L48685
    • Hit length
      1,455 bp
    • E Value
      1.01E-7
    • BLAST Score
      61.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      L48685
      2.13% cov
    • Alignment Length
      31 bp
  • Salmo salar

    Salmo salar

    • Public DB hit
      GI:299773491
      HM159473
      1 of 17 hits reported for Salmo salar.
    • Hit length
      210,212 bp
    • E Value
      2.45E-5
    • BLAST Score
      54 bits
    • Similarity
      96.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HM159473
      0.01% cov
    • Alignment Length
      31 bp
  • Oncorhynchus mykiss

    Oncorhynchus mykiss

    • Public DB hit
      GI:306494795
      HM210571
      1 of 4 hits reported for Oncorhynchus mykiss.
    • Hit length
      91,249 bp
    • E Value
      2.45E-5
    • BLAST Score
      54 bits
    • Similarity
      96.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      HM210571
      0.03% cov
    • Alignment Length
      31 bp
Occurrence
25 times in PatSeqDB
Tools
SEQ ID NO
7
Length
30
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
Occurrence
23 times in PatSeqDB
Tools
SEQ ID NO
8
Length
30
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
  • Salmo salar

    Salmo salar

    • Public DB hit
      GI:294612749
      GU817335
    • Hit length
      194,658 bp
    • E Value
      8.81E-5
    • BLAST Score
      52 bits
    • Similarity
      96.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GU817335
      0.02% cov
    • Alignment Length
      30 bp
    • CIGAR string
      5MN24M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
9
Length
8
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
Occurrence
26 times in PatSeqDB
Tools
SEQ ID NO
10
Length
13
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
salmonid
Determined organism
Occurrence
3 times in PatSeqDB
Tools

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