Methods Of Use Of Lec1 Polynucleotides And Polypeptides

  • Published: Jan 22, 2004
  • Earliest Priority: Jul 19 2002
  • Family: 2
  • Cited Works: 0
  • Cited by: 3
  • Cites: 4
  • Sequences: 5
  • Additional Info: Full text
Data obtained from: USPTO Fulltext
5 sequences found in this patent (in total)

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Download sequences in fasta format: 2 peptides 3 nucleotides

Displaying 5 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
762
Sequence Type
nucleotide
Locations
Claims
Declared organism
Oryza sativa
Determined organism
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:30349364
      AY264284
      1 of 3 hits reported for Oryza sativa Indica Group.
    • Hit length
      765 bp
    • E Value
      0E0
    • BLAST Score
      1,408.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AY264284
      99.61% cov
    • Alignment Length
      762 bp
    • CIGAR string
      762M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:297599866
      NM_001054521
      1 of 4 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,078 bp
    • E Value
      0E0
    • BLAST Score
      1,391.6 bits
    • Similarity
      99.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001054521
      70.69% cov
    • Alignment Length
      762 bp
    • CIGAR string
      21MN478MN38MN222M mismatches: 3 - insertions: 0 - deletions: 0
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
2
Length
254
Sequence Type
peptide
Locations
Claims
Declared organism
Oryza sativa
Determined organism
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:30349365
      AAP22065
      1 of 2 hits reported for Oryza sativa Indica Group.
    • Hit length
      254 aa
    • E Value
      2.8E-144
    • BLAST Score
      516.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAP22065
      100% cov
    • Alignment Length
      254 aa
    • CIGAR string
      254M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115448413
      NP_001047986
    • Hit length
      254 aa
    • E Value
      8.22E-144
    • BLAST Score
      514.2 bits
    • Similarity
      99.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001047986
      100% cov
    • Alignment Length
      254 aa
    • CIGAR string
      7MN246M mismatches: 1 - insertions: 0 - deletions: 0
  • Zea mays

    Zea mays

    • Public DB hit
      GI:162460082
      NP_001105518
    • Hit length
      278 aa
    • E Value
      1.41E-62
    • BLAST Score
      244.6 bits
    • Similarity
      81.82%
    • Coverage
      60.24%
    • Alignment (schematic)

      SEQ ID NO 2
      60.24% cov
      NP_001105518
      59.35% cov
    • Alignment Length
      165 aa
Occurrence
41 times in PatSeqDB
Tools
SEQ ID NO
3
Length
65
Sequence Type
peptide
Locations
Summary
Declared organism
Artificial
Determined organism
  • Zea mays

    Zea mays

    • Public DB hit
      GI:226530961
      NP_001152628
      1 of 2 hits reported for Zea mays.
    • Hit length
      276 aa
    • E Value
      2.87E-20
    • BLAST Score
      102.4 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      NP_001152628
      23.19% cov
    • Alignment Length
      64 aa
    • CIGAR string
      4M2N11M2N2MN10MN11MNMN3MN2M4N3M3NM1H mismatches: 16 - insertions: 0 - deletions: 0
  • Arabidopsis thaliana

    Arabidopsis thaliana

    • Public DB hit
      GI:6552738
      AAF16537
      1 of 4 hits reported for Arabidopsis thaliana.
    • Hit length
      208 aa
    • E Value
      6.25E-20
    • BLAST Score
      101.3 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      AAF16537
      30.77% cov
    • Alignment Length
      64 aa
    • CIGAR string
      4M2N11M2N2MN10MN11MNMN3MN2M4N3M3NM1H mismatches: 16 - insertions: 0 - deletions: 0
  • Sorghum bicolor

    Sorghum bicolor

    • Public DB hit
      GI:242062676
      XP_002452627
    • Hit length
      276 aa
    • E Value
      7.38E-20
    • BLAST Score
      101.3 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      XP_002452627
      23.19% cov
    • Alignment Length
      64 aa
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:115448413
      NP_001047986
      1 of 2 hits reported for Oryza sativa Japonica Group.
    • Hit length
      254 aa
    • E Value
      9.88E-20
    • BLAST Score
      100.9 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      NP_001047986
      25.2% cov
    • Alignment Length
      64 aa
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:37542680
      AAL47209
      1 of 3 hits reported for Oryza sativa Indica Group.
    • Hit length
      254 aa
    • E Value
      1.63E-19
    • BLAST Score
      100.1 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      AAL47209
      25.2% cov
    • Alignment Length
      64 aa
  • Brassica napus

    Brassica napus

    • Public DB hit
      GI:295149262
      ADF81044
      1 of 4 hits reported for Brassica napus.
    • Hit length
      230 aa
    • E Value
      1.89E-19
    • BLAST Score
      99.8 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      ADF81044
      27.83% cov
    • Alignment Length
      64 aa
  • Arabidopsis lyrata subsp. lyrata

    Arabidopsis lyrata subsp. lyrata

    • Public DB hit
      GI:297789362
      XP_002862657
    • Hit length
      236 aa
    • E Value
      3.85E-19
    • BLAST Score
      99 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      XP_002862657
      27.12% cov
    • Alignment Length
      64 aa
  • Helianthus annuus

    Helianthus annuus

    • Public DB hit
      GI:55859472
      CAI05932
    • Hit length
      214 aa
    • E Value
      4.26E-19
    • BLAST Score
      98.6 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      CAI05932
      29.91% cov
    • Alignment Length
      64 aa
  • Oryza sativa

    Oryza sativa

    • Public DB hit
      GI:37542678
      AAL47208
    • Hit length
      250 aa
    • E Value
      9.48E-19
    • BLAST Score
      97.4 bits
    • Similarity
      75%
    • Coverage
      98.46%
    • Alignment (schematic)

      SEQ ID NO 3
      98.46% cov
      AAL47208
      25.6% cov
    • Alignment Length
      64 aa
Occurrence
21 times in PatSeqDB
Tools
SEQ ID NO
4
Length
25
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:37542681
      AY062185
    • Hit length
      2,309 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AY062185
      1.08% cov
    • Alignment Length
      25 bp
    • CIGAR string
      25M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:45735881
      AP004179
    • Hit length
      93,240 bp
    • E Value
      2.09E-4
    • BLAST Score
      50.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AP004179
      0.03% cov
    • Alignment Length
      25 bp
    • CIGAR string
      25M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
5
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Oryza sativa Japonica Group

    Oryza sativa Japonica Group

    • Public DB hit
      GI:297599866
      NM_001054521
      1 of 4 hits reported for Oryza sativa Japonica Group.
    • Hit length
      1,078 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_001054521
      1.86% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryza sativa Indica Group

    Oryza sativa Indica Group

    • Public DB hit
      GI:37542679
      AY062184
      1 of 2 hits reported for Oryza sativa Indica Group.
    • Hit length
      1,062 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AY062184
      1.88% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
2 times in PatSeqDB
Tools

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