Patents
US 7488814 B2

Polynucleotides Encoding Novel Proteins In Enteroaggregative Escherichia Coli (eaec) Useful For Diagnosis And Therapy Of Eaec Infections

  • Published: Feb 10, 2009
  • Earliest Priority: Nov 30 2001
  • Family: 30
  • Cited Works: 29
  • Cited by: 0
  • Cites: 2
  • Sequences: 41
  • Additional Info: Cited Works Full text
Granted Patent
US 7488814 B2
050-233-902-132-514
Data obtained from: DDBJ Pat USPTO Fulltext NCBI GenBank EMBL-EBI Pat
41 sequences found in this patent (in total)

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Download sequences in fasta format: 6 peptides 35 nucleotides

Displaying 1 - 10 of 41 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
348
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284924582
      FN554767
    • Hit length
      113,346 bp
    • E Value
      0E0
    • BLAST Score
      643.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FN554767
      0.31% cov
    • Alignment Length
      348 bp
    • CIGAR string
      348M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218359249
      CU928159
    • Hit length
      72,482 bp
    • E Value
      9.79E-170
    • BLAST Score
      605 bits
    • Similarity
      97.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CU928159
      0.48% cov
    • Alignment Length
      348 bp
    • CIGAR string
      56MN58MN34MN52MN17MN2MN99MN23M mismatches: 7 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:471301
      Z32523
      1 of 2 hits reported for Escherichia coli.
    • Hit length
      2,540 bp
    • E Value
      9.79E-170
    • BLAST Score
      605 bits
    • Similarity
      97.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      Z32523
      13.7% cov
    • Alignment Length
      348 bp
    • CIGAR string
      56MN58MN34MN52MN17MN2MN99MN23M mismatches: 7 - insertions: 0 - deletions: 0
Occurrence
15 times in PatSeqDB
Tools
SEQ ID NO
2
Length
116
Sequence Type
peptide
Locations
Detailed Description, Drawings
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284924621
      CBG27807
    • Hit length
      116 aa
    • E Value
      5.51E-60
    • BLAST Score
      234.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CBG27807
      100% cov
    • Alignment Length
      116 aa
    • CIGAR string
      116M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218511217
      YP_002415675
    • Hit length
      116 aa
    • E Value
      4.4E-57
    • BLAST Score
      224.9 bits
    • Similarity
      96.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_002415675
      100% cov
    • Alignment Length
      116 aa
    • CIGAR string
      38MN11MN22MN34MN7M mismatches: 4 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:116006932
      YP_788115
    • Hit length
      116 aa
    • E Value
      1.24E-56
    • BLAST Score
      223.4 bits
    • Similarity
      96.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      YP_788115
      100% cov
    • Alignment Length
      116 aa
    • CIGAR string
      26MN11MN8MNMN6MN40MN18M mismatches: 6 - insertions: 0 - deletions: 0
  • unspecified (taxid:316397)

    unspecified (taxid:316397)

    • Public DB hit
      GI:167744833
      2JVU_A
    • Hit length
      104 aa
    • E Value
      8.11E-48
    • BLAST Score
      194.1 bits
    • Similarity
      100%
    • Coverage
      81.03%
    • Alignment (schematic)

      SEQ ID NO 2
      81.03% cov
      2JVU_A
      90.38% cov
    • Alignment Length
      94 aa
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
3
Length
7,000
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284924582
      FN554767
      1 of 3 hits reported for Escherichia coli 042.
    • Hit length
      113,346 bp
    • E Value
      0E0
    • BLAST Score
      12,924 bits
    • Similarity
      99.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FN554767
      6.18% cov
    • Alignment Length
      7,000 bp
    • CIGAR string
      862MN6137M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218359249
      CU928159
      1 of 2 hits reported for Escherichia coli 55989.
    • Hit length
      72,482 bp
    • E Value
      0E0
    • BLAST Score
      9,734.8 bits
    • Similarity
      97.25%
    • Coverage
      82.07%
    • Alignment (schematic)

      SEQ ID NO 3
      82.07% cov
      CU928159
      7.93% cov
    • Alignment Length
      5,753 bp
    • CIGAR string
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mismatches: 143 - insertions: 8 - deletions: 7
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:115500638
      AB255435
      1 of 2 hits reported for Escherichia coli.
    • Hit length
      120,730 bp
    • E Value
      0E0
    • BLAST Score
      7,854.9 bits
    • Similarity
      94.21%
    • Coverage
      73.64%
    • Alignment (schematic)

      SEQ ID NO 3
      73.64% cov
      AB255435
      4.26% cov
    • Alignment Length
      5,167 bp
    • CIGAR string
      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 mismatches: 265 - insertions: 12 - deletions: 22
  • Escherichia coli SMS-3-5

    Escherichia coli SMS-3-5

    • Public DB hit
      GI:170517292
      CP000970
      1 of 2 hits reported for Escherichia coli SMS-3-5.
    • Hit length
      5,068,389 bp
    • E Value
      0E0
    • BLAST Score
      680.7 bits
    • Similarity
      95.74%
    • Coverage
      6.01%
    • Alignment (schematic)

      SEQ ID NO 3
      6.01% cov
      CP000970
      0.01% cov
    • Alignment Length
      423 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N7M5898H mismatches: 15 - insertions: 2 - deletions: 1
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312949035
      CP001856
    • Hit length
      147,060 bp
    • E Value
      0E0
    • BLAST Score
      678.8 bits
    • Similarity
      95.73%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      CP001856
      0.29% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N6M5899H mismatches: 15 - insertions: 2 - deletions: 1
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309706192
      FN649418
    • Hit length
      94,797 bp
    • E Value
      0E0
    • BLAST Score
      678.8 bits
    • Similarity
      95.73%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      FN649418
      0.44% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN30MN26MN7MN68MI35MN21MN5M2N6M5899H mismatches: 15 - insertions: 2 - deletions: 1
  • Salmonella enterica subsp. enterica serovar Kentucky

    Salmonella enterica subsp. enterica serovar Kentucky

    • Public DB hit
      GI:301130432
      CP002090
      1 of 2 hits reported for Salmonella enterica subsp. enterica serovar Kentucky.
    • Hit length
      146,811 bp
    • E Value
      0E0
    • BLAST Score
      678.8 bits
    • Similarity
      95.73%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      CP002090
      0.29% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N6M5899H mismatches: 15 - insertions: 2 - deletions: 1
  • Escherichia coli chi7122

    Escherichia coli chi7122

    • Public DB hit
      GI:221589217
      CP000836
    • Hit length
      103,275 bp
    • E Value
      0E0
    • BLAST Score
      678.8 bits
    • Similarity
      95.73%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      CP000836
      0.41% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N6M5899H mismatches: 15 - insertions: 2 - deletions: 1
  • Escherichia coli S88

    Escherichia coli S88

    • Public DB hit
      GI:218349681
      CU928146
    • Hit length
      133,853 bp
    • E Value
      0E0
    • BLAST Score
      678.8 bits
    • Similarity
      95.73%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      CU928146
      0.31% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N6M5899H mismatches: 15 - insertions: 2 - deletions: 1
  • Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188

    Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188

    • Public DB hit
      GI:194358568
      CP001122
    • Hit length
      146,811 bp
    • E Value
      0E0
    • BLAST Score
      678.8 bits
    • Similarity
      95.73%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      CP001122
      0.29% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N6M5899H mismatches: 15 - insertions: 2 - deletions: 1
  • Enterobacteria phage BP-4795

    Enterobacteria phage BP-4795

    • Public DB hit
      GI:49523585
      AJ556162
    • Hit length
      57,930 bp
    • E Value
      0E0
    • BLAST Score
      675.1 bits
    • Similarity
      95.31%
    • Coverage
      6.06%
    • Alignment (schematic)

      SEQ ID NO 3
      6.06% cov
      AJ556162
      0.73% cov
    • Alignment Length
      426 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI99MN11MN2MN56MN33MN7MN14M2N30MN21MI35MN2MN18MN5M2N10M5895H mismatches: 17 - insertions: 2 - deletions: 1
  • Escherichia coli ED1a

    Escherichia coli ED1a

    • Public DB hit
      GI:218425442
      CU928162
    • Hit length
      5,209,548 bp
    • E Value
      0E0
    • BLAST Score
      673.3 bits
    • Similarity
      95.5%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      CU928162
      0.01% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN4MN20MD2MI57MN41MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N6M5899H mismatches: 16 - insertions: 2 - deletions: 1
  • Shigella boydii Sb227

    Shigella boydii Sb227

    • Public DB hit
      GI:81244029
      CP000036
    • Hit length
      4,519,823 bp
    • E Value
      0E0
    • BLAST Score
      673.3 bits
    • Similarity
      95.29%
    • Coverage
      6.04%
    • Alignment (schematic)

      SEQ ID NO 3
      6.04% cov
      CP000036
      0.01% cov
    • Alignment Length
      425 bp
    • CIGAR string
      681H12MN3MN14MNMN4MN4MN20MD2MI69MN29MN14MN8MN23MN57MN7MN68MI35MN21MN5M2N9M5896H mismatches: 17 - insertions: 2 - deletions: 1
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      0E0
    • BLAST Score
      669.6 bits
    • Similarity
      95.08%
    • Coverage
      6.06%
    • Alignment (schematic)

      SEQ ID NO 3
      6.06% cov
      AP010960
      0.01% cov
    • Alignment Length
      427 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MDMI10MN2MN56MN33MN7MN14M2N30MN21MI35MN2MN24M2N10M5895H mismatches: 16 - insertions: 3 - deletions: 2
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      0E0
    • BLAST Score
      669.6 bits
    • Similarity
      95.08%
    • Coverage
      6.06%
    • Alignment (schematic)

      SEQ ID NO 3
      6.06% cov
      CP001368
      0.01% cov
    • Alignment Length
      427 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MDMI10MN2MN56MN33MN7MN14M2N30MN21MI35MN2MN24M2N10M5895H mismatches: 16 - insertions: 3 - deletions: 2
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      0E0
    • BLAST Score
      669.6 bits
    • Similarity
      95.08%
    • Coverage
      6.06%
    • Alignment (schematic)

      SEQ ID NO 3
      6.06% cov
      CP001164
      0.01% cov
    • Alignment Length
      427 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MDMI10MN2MN56MN33MN7MN14M2N30MN21MI35MN2MN24M2N10M5895H mismatches: 16 - insertions: 3 - deletions: 2
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      667.8 bits
    • Similarity
      95.26%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      AP010953
      0.01% cov
    • Alignment Length
      422 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN30MN10MN2MN56MN33MN7MN14M2N30MN21MI35MN2MN24M2N6M5899H mismatches: 17 - insertions: 2 - deletions: 1
  • Shigella boydii CDC 3083-94

    Shigella boydii CDC 3083-94

    • Public DB hit
      GI:187427012
      CP001063
    • Hit length
      4,615,997 bp
    • E Value
      0E0
    • BLAST Score
      667.8 bits
    • Similarity
      95.25%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      CP001063
      0.01% cov
    • Alignment Length
      421 bp
    • CIGAR string
      681H12MN3MN14MNMN4MN4MN21MN70MN29MN14MN8MN23MN57MN7MN68MI35MN2MN18MN5M2N6M5899H mismatches: 19 - insertions: 1 - deletions: 0
  • Escherichia coli APEC O1

    Escherichia coli APEC O1

    • Public DB hit
      GI:88770133
      DQ381420
    • Hit length
      174,241 bp
    • E Value
      0E0
    • BLAST Score
      667.8 bits
    • Similarity
      95.28%
    • Coverage
      6%
    • Alignment (schematic)

      SEQ ID NO 3
      6% cov
      DQ381420
      0.24% cov
    • Alignment Length
      424 bp
    • CIGAR string
      681H31MNMN4MN25MD2MI69MN29MN14MN8MN23MN57MN15MN32MIMD4MIMD20MI35MN27M2N6M5899H mismatches: 13 - insertions: 4 - deletions: 3
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
4
Length
376
Sequence Type
peptide
Locations
Detailed Description, Drawings
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:34148229
      AAQ62648
    • Hit length
      376 aa
    • E Value
      0E0
    • BLAST Score
      738.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAQ62648
      100% cov
    • Alignment Length
      376 aa
    • CIGAR string
      376M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia sp. 4_1_40B

    Escherichia sp. 4_1_40B

    • Public DB hit
      GI:256026250
      ZP_05440115
    • Hit length
      376 aa
    • E Value
      0E0
    • BLAST Score
      721.5 bits
    • Similarity
      99.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_05440115
      100% cov
    • Alignment Length
      376 aa
    • CIGAR string
      8MN81MN17MN66MN15MN90MN31MNMN35MN5MN17M mismatches: 10 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218511206
      YP_002415664
    • Hit length
      387 aa
    • E Value
      0E0
    • BLAST Score
      720.7 bits
    • Similarity
      99.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002415664
      97.16% cov
    • Alignment Length
      376 aa
    • CIGAR string
      8MN81MN17MN66MN15MN90MN31MNMN35MN5MN17M mismatches: 10 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:116006814
      YP_787997
    • Hit length
      381 aa
    • E Value
      0E0
    • BLAST Score
      707.6 bits
    • Similarity
      97.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_787997
      98.69% cov
    • Alignment Length
      376 aa
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
5
Length
412
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:34148230
      AAQ62649
    • Hit length
      412 aa
    • E Value
      0E0
    • BLAST Score
      823.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AAQ62649
      100% cov
    • Alignment Length
      412 aa
    • CIGAR string
      N411M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218511205
      YP_002415663
    • Hit length
      412 aa
    • E Value
      0E0
    • BLAST Score
      802 bits
    • Similarity
      98.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      YP_002415663
      100% cov
    • Alignment Length
      412 aa
    • CIGAR string
      N81MN19MN65MN5MN123MN8MN6MN19MN12MN5MN6MN49MNM mismatches: 13 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:116006815
      YP_787998
    • Hit length
      412 aa
    • E Value
      0E0
    • BLAST Score
      775.8 bits
    • Similarity
      96.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      YP_787998
      100% cov
    • Alignment Length
      412 aa
    • CIGAR string
      NMN7MN110MN22MN5M2N3MN31MN5MN17MN22M2N59MN11MN2MN3MN17MNMN8MN3MN2MN2MN15MN6MN28MN2MNMNM mismatches: 28 - insertions: 0 - deletions: 0
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
6
Length
273
Sequence Type
peptide
Locations
Detailed Description, Drawings
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:34148231
      AAQ62650
      1 of 2 hits reported for Escherichia coli 042.
    • Hit length
      273 aa
    • E Value
      1.68E-155
    • BLAST Score
      553.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AAQ62650
      100% cov
    • Alignment Length
      273 aa
    • CIGAR string
      273M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218511204
      YP_002415662
    • Hit length
      273 aa
    • E Value
      5.86E-152
    • BLAST Score
      541.6 bits
    • Similarity
      98.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_002415662
      100% cov
    • Alignment Length
      273 aa
    • CIGAR string
      43MN49MN6MN4MNMNMN112MN50M mismatches: 7 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:116006816
      YP_787999
    • Hit length
      273 aa
    • E Value
      1.07E-147
    • BLAST Score
      527.7 bits
    • Similarity
      97.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_787999
      100% cov
    • Alignment Length
      273 aa
    • CIGAR string
      30MNMN10MN45MN3MN6MN4MNMNMN23MN49MN5MN56MN26M mismatches: 13 - insertions: 0 - deletions: 0
  • Escherichia sp. 4_1_40B

    Escherichia sp. 4_1_40B

    • Public DB hit
      GI:256026248
      ZP_05440113
    • Hit length
      212 aa
    • E Value
      3.28E-113
    • BLAST Score
      412.9 bits
    • Similarity
      98.58%
    • Coverage
      77.66%
    • Alignment (schematic)

      SEQ ID NO 6
      77.66% cov
      ZP_05440113
      100% cov
    • Alignment Length
      212 aa
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
7
Length
209
Sequence Type
peptide
Locations
Detailed Description, Drawings
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:34148232
      AAQ62651
    • Hit length
      209 aa
    • E Value
      6.97E-114
    • BLAST Score
      414.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AAQ62651
      100% cov
    • Alignment Length
      209 aa
    • CIGAR string
      209M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218511203
      YP_002415661
    • Hit length
      209 aa
    • E Value
      1.03E-112
    • BLAST Score
      410.6 bits
    • Similarity
      99.52%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      YP_002415661
      100% cov
    • Alignment Length
      209 aa
    • CIGAR string
      59MN57M2N90M mismatches: 3 - insertions: 0 - deletions: 0
  • Escherichia sp. 4_1_40B

    Escherichia sp. 4_1_40B

    • Public DB hit
      GI:256026247
      ZP_05440112
    • Hit length
      209 aa
    • E Value
      4.63E-112
    • BLAST Score
      408.3 bits
    • Similarity
      99.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ZP_05440112
      100% cov
    • Alignment Length
      209 aa
    • CIGAR string
      59MN36MN20M2N90M mismatches: 4 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:116006817
      YP_788000
    • Hit length
      209 aa
    • E Value
      8.96E-112
    • BLAST Score
      407.5 bits
    • Similarity
      99.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      YP_788000
      100% cov
    • Alignment Length
      209 aa
  • Citrobacter rodentium ICC168

    Citrobacter rodentium ICC168

    • Public DB hit
      GI:283784121
      YP_003363986
    • Hit length
      209 aa
    • E Value
      1.83E-62
    • BLAST Score
      243.4 bits
    • Similarity
      75.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      YP_003363986
      100% cov
    • Alignment Length
      209 aa
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
8
Length
404
Sequence Type
peptide
Locations
Detailed Description, Drawings
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:34148233
      AAQ62652
    • Hit length
      404 aa
    • E Value
      0E0
    • BLAST Score
      810.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAQ62652
      100% cov
    • Alignment Length
      404 aa
    • CIGAR string
      404M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218511202
      YP_002415660
    • Hit length
      403 aa
    • E Value
      0E0
    • BLAST Score
      776.2 bits
    • Similarity
      98.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_002415660
      100% cov
    • Alignment Length
      404 aa
    • CIGAR string
      77MN33MN34MDN54MN30MN144MN2MN22M mismatches: 7 - insertions: 0 - deletions: 1
  • Escherichia sp. 4_1_40B

    Escherichia sp. 4_1_40B

    • Public DB hit
      GI:256026246
      ZP_05440111
    • Hit length
      403 aa
    • E Value
      0E0
    • BLAST Score
      774.6 bits
    • Similarity
      98.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_05440111
      100% cov
    • Alignment Length
      404 aa
    • CIGAR string
      61MN15MN33MN34MDN54MN30MN144MN2MN22M mismatches: 8 - insertions: 0 - deletions: 1
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:116006818
      YP_788001
    • Hit length
      402 aa
    • E Value
      0E0
    • BLAST Score
      720.3 bits
    • Similarity
      93.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_788001
      100% cov
    • Alignment Length
      404 aa
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
9
Length
1,131
Sequence Type
nucleotide
Locations
Detailed Description, Drawings, Summary
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284924582
      FN554767
      1 of 2 hits reported for Escherichia coli 042.
    • Hit length
      113,346 bp
    • E Value
      0E0
    • BLAST Score
      2,089.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FN554767
      1% cov
    • Alignment Length
      1,131 bp
    • CIGAR string
      1131M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218359249
      CU928159
    • Hit length
      72,482 bp
    • E Value
      0E0
    • BLAST Score
      1,917.9 bits
    • Similarity
      97.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CU928159
      1.56% cov
    • Alignment Length
      1,131 bp
    • CIGAR string
      26MN32MN89MN29MN11MN35MN43MN53MN21MN2MN11MN2MN111MN48MN21MN24MN164MN25MN56MN24MN61MN33MN5MN100MN7MN16MNMN5MN8MN2MN14MN21M mismatches: 31 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:115500638
      AB255435
    • Hit length
      120,730 bp
    • E Value
      0E0
    • BLAST Score
      1,757.3 bits
    • Similarity
      94.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB255435
      0.94% cov
    • Alignment Length
      1,131 bp
    • CIGAR string
      26MN14MN23MN39MN7MN5MN29MN29MN17MN3MN8MNMN13MN15MN20MN2MN4M2N53MN11MN8MN2MNMN2MN4MN4MN33MN13MN9MN43MN8MN29MN44MN21MN7MN21MN43MN20MN11MN26MN9MN20MN61MN17MN2MN38MN47MN9MN13MN9MN5MN45MN6MN33MN4MN8MN26MN2MN11MN17MN21M mismatches: 60 - insertions: 0 - deletions: 0
Occurrence
24 times in PatSeqDB
Tools
SEQ ID NO
10
Length
1,239
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284924582
      FN554767
      1 of 3 hits reported for Escherichia coli 042.
    • Hit length
      113,346 bp
    • E Value
      0E0
    • BLAST Score
      2,289.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      FN554767
      1.09% cov
    • Alignment Length
      1,239 bp
    • CIGAR string
      1239M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 55989

    Escherichia coli 55989

    • Public DB hit
      GI:218359249
      CU928159
    • Hit length
      72,482 bp
    • E Value
      0E0
    • BLAST Score
      2,106.3 bits
    • Similarity
      97.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CU928159
      1.71% cov
    • Alignment Length
      1,240 bp
    • CIGAR string
      65MN38MN35MN80MN23MIMD59MN52MN8MN23MN53MN5MN52MN17MN9MN29MN56MN32MN92MN8MN44MN62MN8MN22MN27MN19MN27MN11MN19MN37MN17MN20MN149MN8M mismatches: 31 - insertions: 1 - deletions: 1
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:115500638
      AB255435
    • Hit length
      120,730 bp
    • E Value
      0E0
    • BLAST Score
      1,956.7 bits
    • Similarity
      95.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AB255435
      1.03% cov
    • Alignment Length
      1,243 bp
    • CIGAR string
      7MN22MN22MN11MN65MN8MN77MN83MN41MN14MN2MNMN3MN53MN10MN16MD2MIN10M2N13MN82M2N5MN9MN16MN2MN20MN13MN69MNMN39MN8MN5MN38MN77MN6MD2MI23MN11MN6MNMN10MN18MN8MN11MN12MN6MN26MN9MDMI9MN2MD5MI48MN19MN86MN9MN5M2N6M mismatches: 52 - insertions: 4 - deletions: 4
Occurrence
24 times in PatSeqDB
Tools

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