Detection Of Bacterium Belonging To The Genus Campylobacter Which Targets Cytolethal Distending Toxin

  • Published: Dec 13, 2017
  • Earliest Priority: Aug 31 2007
  • Family: 25
  • Cited Works: 17
  • Cited by: 0
  • Cites: 2
  • Sequences: 35
  • Additional Info: Cited Works
Data obtained from: EPO Sequence Listings
35 sequences found in this patent (in total)

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Download sequences in fasta format: 9 peptides 26 DNAs

Displaying 1 - 10 of 35 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
3,399
Sequence Type
DNA
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
2
Length
212
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
3
Length
274
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
4
Length
250
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
5
Length
4,069
Sequence Type
DNA
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
6
Length
259
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
7
Length
267
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
8
Length
178
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter hyointestinalis
Determined organism
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
9
Length
265
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter jejuni
Determined organism
  • Campylobacter jejuni subsp. jejuni CF93-6

    Campylobacter jejuni subsp. jejuni CF93-6

    • Public DB hit
      GI:86149650
      ZP_01067880
    • Hit length
      265 aa
    • E Value
      1.04E-152
    • BLAST Score
      544.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_01067880
      100% cov
    • Alignment Length
      265 aa
    • CIGAR string
      265M mismatches: 0 - insertions: 0 - deletions: 0
  • Campylobacter jejuni subsp. jejuni CG8421

    Campylobacter jejuni subsp. jejuni CG8421

    • Public DB hit
      GI:205356457
      ZP_03223221
    • Hit length
      285 aa
    • E Value
      1.67E-152
    • BLAST Score
      543.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_03223221
      92.98% cov
    • Alignment Length
      265 aa
    • CIGAR string
      265M mismatches: 0 - insertions: 0 - deletions: 0
  • Campylobacter jejuni RM1221

    Campylobacter jejuni RM1221

    • Public DB hit
      GI:57237086
      YP_178098
    • Hit length
      265 aa
    • E Value
      3.79E-152
    • BLAST Score
      542.3 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_178098
      100% cov
    • Alignment Length
      265 aa
    • CIGAR string
      233MN31M mismatches: 1 - insertions: 0 - deletions: 0
  • Campylobacter jejuni subsp. jejuni 81116

    Campylobacter jejuni subsp. jejuni 81116

    • Public DB hit
      GI:157414392
      YP_001481648
    • Hit length
      265 aa
    • E Value
      8.5E-152
    • BLAST Score
      541.2 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      YP_001481648
      100% cov
    • Alignment Length
      265 aa
  • Campylobacter jejuni

    Campylobacter jejuni

    • Public DB hit
      GI:41387375
      AAS01598
      1 of 3 hits reported for Campylobacter jejuni.
    • Hit length
      265 aa
    • E Value
      3.6E-151
    • BLAST Score
      538.9 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAS01598
      100% cov
    • Alignment Length
      265 aa
  • Campylobacter jejuni subsp. jejuni 305

    Campylobacter jejuni subsp. jejuni 305

    • Public DB hit
      GI:315930732
      EFV09743
    • Hit length
      218 aa
    • E Value
      2.02E-123
    • BLAST Score
      446.8 bits
    • Similarity
      100%
    • Coverage
      82.26%
    • Alignment (schematic)

      SEQ ID NO 9
      82.26% cov
      EFV09743
      100% cov
    • Alignment Length
      218 aa
  • Campylobacter sp. 11-6

    Campylobacter sp. 11-6

    • Public DB hit
      GI:257123912
      ACV41770
    • Hit length
      207 aa
    • E Value
      5.34E-116
    • BLAST Score
      422.2 bits
    • Similarity
      100%
    • Coverage
      78.11%
    • Alignment (schematic)

      SEQ ID NO 9
      78.11% cov
      ACV41770
      100% cov
    • Alignment Length
      207 aa
  • Campylobacter upsaliensis JV21

    Campylobacter upsaliensis JV21

    • Public DB hit
      GI:315637865
      ZP_07893055
    • Hit length
      265 aa
    • E Value
      3.09E-109
    • BLAST Score
      399.8 bits
    • Similarity
      84.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_07893055
      100% cov
    • Alignment Length
      265 aa
  • Campylobacter upsaliensis RM3195

    Campylobacter upsaliensis RM3195

    • Public DB hit
      GI:57242559
      ZP_00370497
    • Hit length
      265 aa
    • E Value
      7.73E-109
    • BLAST Score
      398.3 bits
    • Similarity
      84.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      ZP_00370497
      100% cov
    • Alignment Length
      265 aa
  • Campylobacter lari

    Campylobacter lari

    • Public DB hit
      GI:316997353
      BAJ52796
      1 of 6 hits reported for Campylobacter lari.
    • Hit length
      268 aa
    • E Value
      5.5E-102
    • BLAST Score
      375.6 bits
    • Similarity
      80.08%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 9
      99.62% cov
      BAJ52796
      99.25% cov
    • Alignment Length
      266 aa
  • Campylobacter coli

    Campylobacter coli

    • Public DB hit
      GI:133251617
      BAF49116
      1 of 2 hits reported for Campylobacter coli.
    • Hit length
      267 aa
    • E Value
      2.64E-99
    • BLAST Score
      366.7 bits
    • Similarity
      78.2%
    • Coverage
      99.62%
    • Alignment (schematic)

      SEQ ID NO 9
      99.62% cov
      BAF49116
      99.63% cov
    • Alignment Length
      266 aa
Occurrence
56 times in PatSeqDB
Tools
SEQ ID NO
10
Length
267
Sequence Type
peptide
Locations
Undetermined
Declared organism
Campylobacter coli
Determined organism
  • Campylobacter coli

    Campylobacter coli

    • Public DB hit
      GI:65736481
      BAD98506
      1 of 4 hits reported for Campylobacter coli.
    • Hit length
      267 aa
    • E Value
      1.7E-150
    • BLAST Score
      536.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BAD98506
      100% cov
    • Alignment Length
      267 aa
    • CIGAR string
      267M mismatches: 0 - insertions: 0 - deletions: 0
  • Campylobacter coli JV20

    Campylobacter coli JV20

    • Public DB hit
      GI:305432840
      ZP_07401998
    • Hit length
      267 aa
    • E Value
      2.56E-149
    • BLAST Score
      532.7 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_07401998
      100% cov
    • Alignment Length
      267 aa
  • Campylobacter coli RM2228

    Campylobacter coli RM2228

    • Public DB hit
      GI:57168419
      ZP_00367553
    • Hit length
      267 aa
    • E Value
      1E-148
    • BLAST Score
      530.8 bits
    • Similarity
      98.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      ZP_00367553
      100% cov
    • Alignment Length
      267 aa
  • Campylobacter lari

    Campylobacter lari

    • Public DB hit
      GI:126363573
      BAF48050
      1 of 11 hits reported for Campylobacter lari.
    • Hit length
      268 aa
    • E Value
      2.11E-128
    • BLAST Score
      463.4 bits
    • Similarity
      92.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BAF48050
      99.63% cov
    • Alignment Length
      267 aa
  • Campylobacter lari RM2100

    Campylobacter lari RM2100

    • Public DB hit
      GI:222824368
      YP_002575942
    • Hit length
      259 aa
    • E Value
      2.64E-123
    • BLAST Score
      446.4 bits
    • Similarity
      92.28%
    • Coverage
      97%
    • Alignment (schematic)

      SEQ ID NO 10
      97% cov
      YP_002575942
      100% cov
    • Alignment Length
      259 aa
  • Campylobacter jejuni subsp. jejuni 1336

    Campylobacter jejuni subsp. jejuni 1336

    • Public DB hit
      GI:283955717
      ZP_06373208
    • Hit length
      268 aa
    • E Value
      3.19E-106
    • BLAST Score
      389.8 bits
    • Similarity
      85.34%
    • Coverage
      99.63%
    • Alignment (schematic)

      SEQ ID NO 10
      99.63% cov
      ZP_06373208
      99.25% cov
    • Alignment Length
      266 aa
  • Campylobacter upsaliensis JV21

    Campylobacter upsaliensis JV21

    • Public DB hit
      GI:315637865
      ZP_07893055
    • Hit length
      265 aa
    • E Value
      8.19E-105
    • BLAST Score
      385.2 bits
    • Similarity
      81.2%
    • Coverage
      99.63%
    • Alignment (schematic)

      SEQ ID NO 10
      99.63% cov
      ZP_07893055
      99.62% cov
    • Alignment Length
      266 aa
Occurrence
63 times in PatSeqDB
Tools

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