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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat

4 sequences found in this patent (in total)

Displaying 4 sequences

SEQ ID NO

Length

Type

Locations

Organisms

Occurrence

Tools

SEQ ID NO

Length

516

Type

DNA

Locations

Claims, Fulltext

Declared organism:
Escherichia coli

Determined organism:

Escherichia coli BL21(DE3)
Escherichia coli BL21(DE3)
Public DB hit
GI:313848522
AM946981
1 of 2 hits reported for Escherichia coli BL21(DE3).

Hit length
4,558,947 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AM946981

0.01% cov

Alignment Length
516 bp

CIGAR string
516M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli ETEC H10407
Escherichia coli ETEC H10407
Public DB hit
GI:309700213
FN649414

Hit length
5,153,435 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
FN649414

0.01% cov

Alignment Length
516 bp

CIGAR string
516M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli B str. REL606
Escherichia coli B str. REL606
Public DB hit
GI:253972022
CP000819

Hit length
4,629,812 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000819

0.01% cov

Alignment Length
516 bp
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Escherichia coli 'BL21-Gold(DE3)pLysS AG'
Public DB hit
GI:253322479
CP001665

Hit length
4,570,938 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP001665

0.01% cov

Alignment Length
516 bp
Escherichia coli BW2952
Escherichia coli BW2952
Public DB hit
GI:238859724
CP001396

Hit length
4,578,159 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP001396

0.01% cov

Alignment Length
516 bp
Escherichia coli str. K-12 substr. DH10B
Escherichia coli str. K-12 substr. DH10B
Public DB hit
GI:169887498
CP000948

Hit length
4,686,137 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000948

0.01% cov

Alignment Length
516 bp
Escherichia coli ATCC 8739
Escherichia coli ATCC 8739
Public DB hit
GI:169752989
CP000946

Hit length
4,746,218 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000946

0.01% cov

Alignment Length
516 bp
Escherichia coli E24377A
Escherichia coli E24377A
Public DB hit
GI:157076741
CP000800

Hit length
4,979,619 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000800

0.01% cov

Alignment Length
516 bp
Escherichia coli HS
Escherichia coli HS
Public DB hit
GI:157065147
CP000802

Hit length
4,643,538 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000802

0.01% cov

Alignment Length
516 bp
Escherichia coli str. K-12 substr. W3110
Escherichia coli str. K-12 substr. W3110
Public DB hit
GI:85674274
AP009048

Hit length
4,646,332 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AP009048

0.01% cov

Alignment Length
516 bp
Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655
Public DB hit
GI:48994873
U00096

Hit length
4,639,675 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
U00096

0.01% cov

Alignment Length
516 bp
Shigella sonnei Ss046
Shigella sonnei Ss046
Public DB hit
GI:73854091
CP000038

Hit length
4,825,265 bp

E Value
0E0

BLAST Score
954 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000038

0.01% cov

Alignment Length
516 bp
Escherichia coli UMNK88
Escherichia coli UMNK88
Public DB hit
GI:332341332
CP002729

Hit length
5,186,416 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP002729

0.01% cov

Alignment Length
516 bp
Escherichia coli
Escherichia coli
Public DB hit
GI:326583188
HQ538844

Hit length
516 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
HQ538844

100% cov

Alignment Length
516 bp
Escherichia coli KO11FL
Escherichia coli KO11FL
Public DB hit
GI:323376397
CP002516

Hit length
4,920,168 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP002516

0.01% cov

Alignment Length
516 bp
Escherichia coli W
Escherichia coli W
Public DB hit
GI:315059226
CP002185

Hit length
4,900,968 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP002185

0.01% cov

Alignment Length
516 bp
Shigella flexneri 2002017
Shigella flexneri 2002017
Public DB hit
GI:281599365
CP001383

Hit length
4,650,856 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP001383

0.01% cov

Alignment Length
516 bp
Escherichia coli O111:H- str. 11128
Escherichia coli O111:H- str. 11128
Public DB hit
GI:257762509
AP010960

Hit length
5,371,077 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AP010960

0.01% cov

Alignment Length
516 bp
Escherichia coli O26:H11 str. 11368
Escherichia coli O26:H11 str. 11368
Public DB hit
GI:257751862
AP010953

Hit length
5,697,240 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AP010953

0.01% cov

Alignment Length
516 bp
Shigella flexneri 5 str. 8401
Shigella flexneri 5 str. 8401
Public DB hit
GI:110613622
CP000266

Hit length
4,574,284 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
CP000266

0.01% cov

Alignment Length
516 bp
Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
Public DB hit
GI:24080789
AE005674

Hit length
4,607,203 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AE005674

0.01% cov

Alignment Length
516 bp
Shigella flexneri 2a str. 2457T
Shigella flexneri 2a str. 2457T
Public DB hit
GI:30043918
AE014073

Hit length
4,599,354 bp

E Value
0E0

BLAST Score
948.5 bits

Similarity

99.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AE014073

0.01% cov

Alignment Length
516 bp
Escherichia coli DH1
Escherichia coli DH1
Public DB hit
GI:315134697
AP012030
1 of 2 hits reported for Escherichia coli DH1.

Hit length
4,621,430 bp

E Value
0E0

BLAST Score
941.1 bits

Similarity

99.61%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AP012030

0.01% cov

Alignment Length
516 bp

Occurrence

46 times in PatSeqDB

in 10 extended families
(5 referenced in claims)
in 11 simple families
(5 referenced in claims)
in 44 documents

Tools

PatSeq Finder

SEQ ID NO

Length

171

Type

peptide

Locations

Claims, Fulltext

Declared organism:
Escherichia coli

Determined organism:

Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655
Public DB hit
GI:16130599
NP_417172

Hit length
171 aa

E Value
6.43E-98

BLAST Score
360.5 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
NP_417172

100% cov

Alignment Length
171 aa

CIGAR string
171M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli O157:H7 str. EDL933
Escherichia coli O157:H7 str. EDL933
Public DB hit
GI:15803206
NP_289238

Hit length
171 aa

E Value
1.93E-97

BLAST Score
359 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
NP_289238

100% cov

Alignment Length
171 aa

CIGAR string
102MN68M mismatches: 1 - insertions: 0 - deletions: 0
Escherichia coli 2362-75
Escherichia coli 2362-75
Public DB hit
GI:312965604
ZP_07779834
1 of 2 hits reported for Escherichia coli 2362-75.

Hit length
171 aa

E Value
2.02E-97

BLAST Score
359 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ZP_07779834

100% cov

Alignment Length
171 aa

CIGAR string
41MN129M mismatches: 1 - insertions: 0 - deletions: 0
Escherichia coli CFT073
Escherichia coli CFT073
Public DB hit
GI:26249086
NP_755126
1 of 2 hits reported for Escherichia coli CFT073.

Hit length
171 aa

E Value
2.02E-97

BLAST Score
359 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
NP_755126

100% cov

Alignment Length
171 aa
Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301
Public DB hit
GI:24113989
NP_708499

Hit length
171 aa

E Value
2.03E-97

BLAST Score
359 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
NP_708499

100% cov

Alignment Length
171 aa
Escherichia coli B7A
Escherichia coli B7A
Public DB hit
GI:191167092
ZP_03028913

Hit length
171 aa

E Value
2.08E-97

BLAST Score
358.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ZP_03028913

100% cov

Alignment Length
171 aa
Escherichia coli O26:H11 str. 11368
Escherichia coli O26:H11 str. 11368
Public DB hit
GI:260856797
YP_003230688

Hit length
171 aa

E Value
2.72E-97

BLAST Score
358.2 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
YP_003230688

100% cov

Alignment Length
171 aa
Shigella boydii Sb227
Shigella boydii Sb227
Public DB hit
GI:82545232
YP_409179

Hit length
171 aa

E Value
3.22E-97

BLAST Score
358.2 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
YP_409179

100% cov

Alignment Length
171 aa
Escherichia coli 53638
Escherichia coli 53638
Public DB hit
GI:188492601
ZP_02999871

Hit length
171 aa

E Value
4.53E-97

BLAST Score
357.8 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ZP_02999871

100% cov

Alignment Length
171 aa
Escherichia coli IAI39
Escherichia coli IAI39
Public DB hit
GI:218701182
YP_002408811

Hit length
171 aa

E Value
1.36E-96

BLAST Score
355.9 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
YP_002408811

100% cov

Alignment Length
171 aa
Shigella flexneri J1713
Shigella flexneri J1713
Public DB hit
GI:335574399
EGM60725

Hit length
169 aa

E Value
2.66E-96

BLAST Score
355.1 bits

Similarity

100%

Coverage

98.83%

Alignment (schematic)

SEQ ID NO 2

98.83% cov
EGM60725

100% cov

Alignment Length
169 aa
Escherichia albertii TW07627
Escherichia albertii TW07627
Public DB hit
GI:170766099
ZP_02900910

Hit length
171 aa

E Value
2.89E-96

BLAST Score
355.1 bits

Similarity

99.42%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ZP_02900910

100% cov

Alignment Length
171 aa
Citrobacter sp. 30_2
Citrobacter sp. 30_2
Public DB hit
GI:237729646
ZP_04560127

Hit length
171 aa

E Value
2.4E-95

BLAST Score
352.1 bits

Similarity

98.25%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ZP_04560127

100% cov

Alignment Length
171 aa

Occurrence

45 times in PatSeqDB

in 8 extended families
(3 referenced in claims)
in 9 simple families
(3 referenced in claims)
in 34 documents

Tools

PatSeq Finder

SEQ ID NO

Length

699

Type

DNA

Locations

Claims, Fulltext

Declared organism:
Escherichia coli

Determined organism:

Escherichia coli DH1
Escherichia coli DH1
Public DB hit
GI:315134697
AP012030
1 of 2 hits reported for Escherichia coli DH1.

Hit length
4,621,430 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AP012030

0.02% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli ETEC H10407
Escherichia coli ETEC H10407
Public DB hit
GI:309700213
FN649414

Hit length
5,153,435 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
FN649414

0.01% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli BW2952
Escherichia coli BW2952
Public DB hit
GI:238859724
CP001396

Hit length
4,578,159 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP001396

0.02% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli IAI1
Escherichia coli IAI1
Public DB hit
GI:218359353
CU928160

Hit length
4,700,560 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CU928160

0.01% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli SE11
Escherichia coli SE11
Public DB hit
GI:209910450
AP009240

Hit length
4,887,515 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AP009240

0.01% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli str. K-12 substr. DH10B
Escherichia coli str. K-12 substr. DH10B
Public DB hit
GI:169887498
CP000948

Hit length
4,686,137 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP000948

0.01% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli str. K-12 substr. W3110
Escherichia coli str. K-12 substr. W3110
Public DB hit
GI:85674274
AP009048

Hit length
4,646,332 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AP009048

0.02% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655
Public DB hit
GI:48994873
U00096

Hit length
4,639,675 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
U00096

0.02% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli
Escherichia coli
Public DB hit
GI:2981266
U24438
1 of 4 hits reported for Escherichia coli.

Hit length
699 bp

E Value
0E0

BLAST Score
1,291.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
U24438

100% cov

Alignment Length
699 bp

CIGAR string
699M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli O111:H- str. 11128
Escherichia coli O111:H- str. 11128
Public DB hit
GI:257762509
AP010960

Hit length
5,371,077 bp

E Value
0E0

BLAST Score
1,286.4 bits

Similarity

99.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AP010960

0.01% cov

Alignment Length
699 bp

CIGAR string
65MN633M mismatches: 1 - insertions: 0 - deletions: 0
Escherichia coli O26:H11 str. 11368
Escherichia coli O26:H11 str. 11368
Public DB hit
GI:257751862
AP010953

Hit length
5,697,240 bp

E Value
0E0

BLAST Score
1,286.4 bits

Similarity

99.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AP010953

0.01% cov

Alignment Length
699 bp

CIGAR string
65MN633M mismatches: 1 - insertions: 0 - deletions: 0
Escherichia coli 55989
Escherichia coli 55989
Public DB hit
GI:218350208
CU928145

Hit length
5,154,862 bp

E Value
0E0

BLAST Score
1,286.4 bits

Similarity

99.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CU928145

0.01% cov

Alignment Length
699 bp

CIGAR string
180MN518M mismatches: 1 - insertions: 0 - deletions: 0
Escherichia coli E24377A
Escherichia coli E24377A
Public DB hit
GI:157076741
CP000800

Hit length
4,979,619 bp

E Value
0E0

BLAST Score
1,286.4 bits

Similarity

99.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP000800

0.01% cov

Alignment Length
699 bp

CIGAR string
180MN518M mismatches: 1 - insertions: 0 - deletions: 0
Escherichia coli HS
Escherichia coli HS
Public DB hit
GI:157065147
CP000802

Hit length
4,643,538 bp

E Value
0E0

BLAST Score
1,286.4 bits

Similarity

99.86%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP000802

0.02% cov

Alignment Length
699 bp

CIGAR string
65MN633M mismatches: 1 - insertions: 0 - deletions: 0
Escherichia coli KO11FL
Escherichia coli KO11FL
Public DB hit
GI:323376397
CP002516

Hit length
4,920,168 bp

E Value
0E0

BLAST Score
1,280.8 bits

Similarity

99.71%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP002516

0.01% cov

Alignment Length
699 bp

CIGAR string
180MN68MN449M mismatches: 2 - insertions: 0 - deletions: 0
Escherichia coli W
Escherichia coli W
Public DB hit
GI:315059226
CP002185

Hit length
4,900,968 bp

E Value
0E0

BLAST Score
1,280.8 bits

Similarity

99.71%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP002185

0.01% cov

Alignment Length
699 bp

CIGAR string
180MN68MN449M mismatches: 2 - insertions: 0 - deletions: 0
Escherichia coli O103:H2 str. 12009
Escherichia coli O103:H2 str. 12009
Public DB hit
GI:257757386
AP010958

Hit length
5,449,314 bp

E Value
0E0

BLAST Score
1,280.8 bits

Similarity

99.71%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AP010958

0.01% cov

Alignment Length
699 bp

CIGAR string
180MN302MN215M mismatches: 2 - insertions: 0 - deletions: 0
Shigella boydii CDC 3083-94
Shigella boydii CDC 3083-94
Public DB hit
GI:187427012
CP001063

Hit length
4,615,997 bp

E Value
0E0

BLAST Score
1,280.8 bits

Similarity

99.71%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP001063

0.02% cov

Alignment Length
699 bp

CIGAR string
65MN620MN12M mismatches: 2 - insertions: 0 - deletions: 0
Shigella dysenteriae Sd197
Shigella dysenteriae Sd197
Public DB hit
GI:81239530
CP000034

Hit length
4,369,232 bp

E Value
0E0

BLAST Score
1,280.8 bits

Similarity

99.71%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP000034

0.02% cov

Alignment Length
699 bp

CIGAR string
249MN436MN12M mismatches: 2 - insertions: 0 - deletions: 0
Escherichia coli UMNK88
Escherichia coli UMNK88
Public DB hit
GI:332341332
CP002729

Hit length
5,186,416 bp

E Value
0E0

BLAST Score
1,275.3 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP002729

0.01% cov

Alignment Length
699 bp

CIGAR string
180MN388MN2MN126M mismatches: 3 - insertions: 0 - deletions: 0
Shigella boydii Sb227
Shigella boydii Sb227
Public DB hit
GI:81244029
CP000036

Hit length
4,519,823 bp

E Value
0E0

BLAST Score
1,275.3 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CP000036

0.02% cov

Alignment Length
699 bp

CIGAR string
65MN129MN490MN12M mismatches: 3 - insertions: 0 - deletions: 0

Occurrence

29 times in PatSeqDB

in 9 extended families
(4 referenced in claims)
in 12 simple families
(5 referenced in claims)
in 27 documents

Tools

PatSeq Finder

SEQ ID NO

Length

232

Type

peptide

Locations

Claims, Fulltext

Declared organism:
Escherichia coli

Determined organism:

unspecified (taxid:0)
unspecified (taxid:0)
Public DB hit
GI:302566280
3O4V_A

Hit length
234 aa

E Value
1.87E-130

BLAST Score
469.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
3O4V_A

99.15% cov

Alignment Length
232 aa

CIGAR string
232M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli O157:H7 str. EDL933
Escherichia coli O157:H7 str. EDL933
Public DB hit
GI:15799843
NP_285855

Hit length
232 aa

E Value
2.16E-130

BLAST Score
469.5 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
NP_285855

100% cov

Alignment Length
232 aa

CIGAR string
232M mismatches: 0 - insertions: 0 - deletions: 0
Escherichia coli 53638
Escherichia coli 53638
Public DB hit
GI:188496049
ZP_03003319
1 of 2 hits reported for Escherichia coli 53638.

Hit length
232 aa

E Value
3.02E-130

BLAST Score
469.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ZP_03003319

100% cov

Alignment Length
232 aa

CIGAR string
186MN45M mismatches: 1 - insertions: 0 - deletions: 0
Shigella boydii 5216-82
Shigella boydii 5216-82
Public DB hit
GI:332095195
EGJ00224

Hit length
232 aa

E Value
3.02E-130

BLAST Score
469.2 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
EGJ00224

100% cov

Alignment Length
232 aa
Escherichia coli
Escherichia coli
Public DB hit
GI:24158768
1JYS_A
1 of 3 hits reported for Escherichia coli.

Hit length
242 aa

E Value
3.31E-130

BLAST Score
468.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
1JYS_A

95.87% cov

Alignment Length
232 aa
Escherichia coli MS 182-1
Escherichia coli MS 182-1
Public DB hit
GI:300923048
ZP_07139115

Hit length
232 aa

E Value
3.68E-130

BLAST Score
468.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ZP_07139115

100% cov

Alignment Length
232 aa
Escherichia coli TA280
Escherichia coli TA280
Public DB hit
GI:331671668
ZP_08372466
1 of 2 hits reported for Escherichia coli TA280.

Hit length
232 aa

E Value
5.32E-130

BLAST Score
468.4 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ZP_08372466

100% cov

Alignment Length
232 aa
Escherichia coli M605
Escherichia coli M605
Public DB hit
GI:331645303
ZP_08346414
1 of 2 hits reported for Escherichia coli M605.

Hit length
232 aa

E Value
5.32E-130

BLAST Score
468.4 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ZP_08346414

100% cov

Alignment Length
232 aa
Shigella flexneri VA-6
Shigella flexneri VA-6
Public DB hit
GI:333010652
EGK30085

Hit length
232 aa

E Value
5.32E-130

BLAST Score
468.4 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
EGK30085

100% cov

Alignment Length
232 aa
Shigella flexneri CDC 796-83
Shigella flexneri CDC 796-83
Public DB hit
GI:320186579
EFW61304

Hit length
232 aa

E Value
7.74E-130

BLAST Score
467.6 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
EFW61304

100% cov

Alignment Length
232 aa
Escherichia coli HS
Escherichia coli HS
Public DB hit
GI:157159626
YP_001456944

Hit length
232 aa

E Value
1.07E-129

BLAST Score
467.2 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
YP_001456944

100% cov

Alignment Length
232 aa
Escherichia coli NC101
Escherichia coli NC101
Public DB hit
GI:306815239
ZP_07449388

Hit length
232 aa

E Value
1.84E-129

BLAST Score
466.5 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ZP_07449388

100% cov

Alignment Length
232 aa
Escherichia sp. 1_1_43
Escherichia sp. 1_1_43
Public DB hit
GI:254037579
ZP_04871656
1 of 2 hits reported for Escherichia sp. 1_1_43.

Hit length
232 aa

E Value
2.45E-129

BLAST Score
466.1 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
ZP_04871656

100% cov

Alignment Length
232 aa
Escherichia coli TW10509
Escherichia coli TW10509
Public DB hit
GI:323975673
EGB70769

Hit length
232 aa

E Value
2.45E-129

BLAST Score
466.1 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
EGB70769

100% cov

Alignment Length
232 aa
Escherichia coli O103:H2 str. 12009
Escherichia coli O103:H2 str. 12009
Public DB hit
GI:260842393
YP_003220171

Hit length
232 aa

E Value
3.59E-129

BLAST Score
465.3 bits

Similarity

99.57%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
YP_003220171

100% cov

Alignment Length
232 aa

Occurrence

51 times in PatSeqDB

in 12 extended families
(8 referenced in claims)
in 14 simple families
(9 referenced in claims)
in 40 documents

Tools

PatSeq Finder

Search for Biological Sequences disclosed in Patents

4 sequences found in this patent (in total)

Displaying 4 sequences

Escherichia coli BL21(DE3)

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Escherichia coli ETEC H10407

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Escherichia coli B str. REL606

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Escherichia coli 'BL21-Gold(DE3)pLysS AG'

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Escherichia coli BW2952

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Escherichia coli str. K-12 substr. DH10B

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Escherichia coli ATCC 8739

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Escherichia coli E24377A

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Escherichia coli HS

Public DB hit

Hit length