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Search for Biological Sequences disclosed in Patents

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Data obtained from: USPTO Fulltext
157 sequences found in this patent (in total)

Displaying 1 - 10 of 157 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
3,206
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:57099818
      XM_540538
    • Hit length
      3,132 bp
    • E Value
      0E0
    • BLAST Score
      2,054.6 bits
    • Similarity
      79.44%
    • Coverage
      93.95%
    • Alignment (schematic)

      SEQ ID NO 1
      93.95% cov
      XM_540538
      96.14% cov
    • Alignment Length
      3,079 bp
  • Marmosa rubra

    Marmosa rubra

    • Public DB hit
      GI:114438877
      DQ865901
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      79.27%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865901
      91.86% cov
    • Alignment Length
      2,624 bp
  • Marmosa robinsoni

    Marmosa robinsoni

    • Public DB hit
      GI:114438875
      DQ865900
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,711.1 bits
    • Similarity
      79.16%
    • Coverage
      79.54%
    • Alignment (schematic)

      SEQ ID NO 1
      79.54% cov
      DQ865900
      91.4% cov
    • Alignment Length
      2,606 bp
  • Micoureus regina

    Micoureus regina

    • Public DB hit
      GI:114438895
      DQ865910
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,674.2 bits
    • Similarity
      78.81%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865910
      91.86% cov
    • Alignment Length
      2,615 bp
  • Marmosa mexicana

    Marmosa mexicana

    • Public DB hit
      GI:114438871
      DQ865898
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,672.3 bits
    • Similarity
      78.83%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865898
      91.86% cov
    • Alignment Length
      2,617 bp
  • Micoureus demerarae

    Micoureus demerarae

    • Public DB hit
      GI:114438891
      DQ865908
    • Hit length
      2,676 bp
    • E Value
      0E0
    • BLAST Score
      1,628 bits
    • Similarity
      79.15%
    • Coverage
      75.95%
    • Alignment (schematic)

      SEQ ID NO 1
      75.95% cov
      DQ865908
      90.96% cov
    • Alignment Length
      2,484 bp
  • Gracilinanus aceramarcae

    Gracilinanus aceramarcae

    • Public DB hit
      GI:114438859
      DQ865892
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,585.5 bits
    • Similarity
      78.69%
    • Coverage
      77.01%
    • Alignment (schematic)

      SEQ ID NO 1
      77.01% cov
      DQ865892
      88.49% cov
    • Alignment Length
      2,520 bp
  • Thylamys pallidior

    Thylamys pallidior

    • Public DB hit
      GI:114438913
      DQ865919
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,576.3 bits
    • Similarity
      78.28%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865919
      91.86% cov
    • Alignment Length
      2,624 bp
  • Thylamys macrura

    Thylamys macrura

    • Public DB hit
      GI:114438911
      DQ865918
    • Hit length
      2,783 bp
    • E Value
      0E0
    • BLAST Score
      1,565.2 bits
    • Similarity
      78.19%
    • Coverage
      79.76%
    • Alignment (schematic)

      SEQ ID NO 1
      79.76% cov
      DQ865918
      91.84% cov
    • Alignment Length
      2,614 bp
  • Thylamys venustus

    Thylamys venustus

    • Public DB hit
      GI:114438917
      DQ865921
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,561.5 bits
    • Similarity
      78.12%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865921
      91.86% cov
    • Alignment Length
      2,624 bp
  • Marmosa murina

    Marmosa murina

    • Public DB hit
      GI:114438873
      DQ865899
    • Hit length
      2,684 bp
    • E Value
      0E0
    • BLAST Score
      1,561.5 bits
    • Similarity
      78.59%
    • Coverage
      76.45%
    • Alignment (schematic)

      SEQ ID NO 1
      76.45% cov
      DQ865899
      91.32% cov
    • Alignment Length
      2,504 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296217926
      XM_002755187
    • Hit length
      3,233 bp
    • E Value
      0E0
    • BLAST Score
      1,546.8 bits
    • Similarity
      76.38%
    • Coverage
      93.48%
    • Alignment (schematic)

      SEQ ID NO 1
      93.48% cov
      XM_002755187
      92.7% cov
    • Alignment Length
      3,048 bp
  • Gracilinanus emiliae

    Gracilinanus emiliae

    • Public DB hit
      GI:114438863
      DQ865894
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,530.1 bits
    • Similarity
      78.34%
    • Coverage
      77.01%
    • Alignment (schematic)

      SEQ ID NO 1
      77.01% cov
      DQ865894
      88.49% cov
    • Alignment Length
      2,525 bp
  • Marmosa lepida

    Marmosa lepida

    • Public DB hit
      GI:114438869
      DQ865897
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,520.9 bits
    • Similarity
      78.28%
    • Coverage
      77.01%
    • Alignment (schematic)

      SEQ ID NO 1
      77.01% cov
      DQ865897
      88.49% cov
    • Alignment Length
      2,528 bp
  • Cryptonanus chacoensis

    Cryptonanus chacoensis

    • Public DB hit
      GI:114438847
      DQ865886
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,504.3 bits
    • Similarity
      78.2%
    • Coverage
      77.01%
    • Alignment (schematic)

      SEQ ID NO 1
      77.01% cov
      DQ865886
      88.49% cov
    • Alignment Length
      2,532 bp
  • Cryptonanus unduaviensis

    Cryptonanus unduaviensis

    • Public DB hit
      GI:114438849
      DQ865887
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,498.8 bits
    • Similarity
      78.16%
    • Coverage
      77.01%
    • Alignment (schematic)

      SEQ ID NO 1
      77.01% cov
      DQ865887
      88.49% cov
    • Alignment Length
      2,532 bp
  • Marmosops incanus

    Marmosops incanus

    • Public DB hit
      GI:114438881
      DQ865903
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,404.6 bits
    • Similarity
      77.12%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865903
      91.86% cov
    • Alignment Length
      2,627 bp
  • Micoureus paraguayanus

    Micoureus paraguayanus

    • Public DB hit
      GI:114438893
      DQ865909
    • Hit length
      2,376 bp
    • E Value
      0E0
    • BLAST Score
      1,314.1 bits
    • Similarity
      78.19%
    • Coverage
      67%
    • Alignment (schematic)

      SEQ ID NO 1
      67% cov
      DQ865909
      90.4% cov
    • Alignment Length
      2,196 bp
  • Tlacuatzin canescens

    Tlacuatzin canescens

    • Public DB hit
      GI:114438919
      DQ865922
    • Hit length
      2,683 bp
    • E Value
      0E0
    • BLAST Score
      1,310.4 bits
    • Similarity
      77.24%
    • Coverage
      73.52%
    • Alignment (schematic)

      SEQ ID NO 1
      73.52% cov
      DQ865922
      87.85% cov
    • Alignment Length
      2,416 bp
  • Marmosops pinheiroi

    Marmosops pinheiroi

    • Public DB hit
      GI:114438887
      DQ865906
    • Hit length
      2,784 bp
    • E Value
      0E0
    • BLAST Score
      1,299.3 bits
    • Similarity
      76.66%
    • Coverage
      77.01%
    • Alignment (schematic)

      SEQ ID NO 1
      77.01% cov
      DQ865906
      88.69% cov
    • Alignment Length
      2,524 bp
  • Marmosops noctivagus

    Marmosops noctivagus

    • Public DB hit
      GI:114438883
      DQ865904
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,295.6 bits
    • Similarity
      76.34%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865904
      91.86% cov
    • Alignment Length
      2,625 bp
  • Thylamys pusillus

    Thylamys pusillus

    • Public DB hit
      GI:114438915
      DQ865920
    • Hit length
      2,378 bp
    • E Value
      0E0
    • BLAST Score
      1,286.4 bits
    • Similarity
      77.94%
    • Coverage
      67%
    • Alignment (schematic)

      SEQ ID NO 1
      67% cov
      DQ865920
      90.33% cov
    • Alignment Length
      2,203 bp
  • Glironia venusta

    Glironia venusta

    • Public DB hit
      GI:114438857
      DQ865891
    • Hit length
      2,790 bp
    • E Value
      0E0
    • BLAST Score
      1,286.4 bits
    • Similarity
      76.28%
    • Coverage
      79.94%
    • Alignment (schematic)

      SEQ ID NO 1
      79.94% cov
      DQ865891
      91.86% cov
    • Alignment Length
      2,626 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,043
Type
peptide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4557841
      NP_000439
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      2,177.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_000439
      100% cov
    • Alignment Length
      1,043 aa
    • CIGAR string
      1043M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114637060
      XP_001154240
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      2,170.2 bits
    • Similarity
      99.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001154240
      100% cov
    • Alignment Length
      1,043 aa
    • CIGAR string
      94MN10MN278MN658M mismatches: 3 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297688918
      XP_002821911
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      2,152.9 bits
    • Similarity
      99.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002821911
      100% cov
    • Alignment Length
      1,043 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332210769
      XP_003254485
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      2,141.3 bits
    • Similarity
      99.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003254485
      100% cov
    • Alignment Length
      1,043 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109109457
      XP_001084631
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      2,139.4 bits
    • Similarity
      99.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001084631
      100% cov
    • Alignment Length
      1,043 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296217927
      XP_002755233
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      2,070.8 bits
    • Similarity
      98.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002755233
      100% cov
    • Alignment Length
      1,043 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149725023
      XP_001488008
    • Hit length
      1,042 aa
    • E Value
      0E0
    • BLAST Score
      2,031.1 bits
    • Similarity
      96.07%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001488008
      100% cov
    • Alignment Length
      1,043 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:76636278
      XP_872414
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      2,002.6 bits
    • Similarity
      95.49%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_872414
      100% cov
    • Alignment Length
      1,043 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:283837838
      NP_001164611
    • Hit length
      1,042 aa
    • E Value
      0E0
    • BLAST Score
      2,001.5 bits
    • Similarity
      95.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001164611
      100% cov
    • Alignment Length
      1,043 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301782259
      XP_002926544
    • Hit length
      1,043 aa
    • E Value
      0E0
    • BLAST Score
      1,997.6 bits
    • Similarity
      95.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002926544
      100% cov
    • Alignment Length
      1,043 aa
  • Lama glama

    Lama glama

    • Public DB hit
      GI:13345171
      AAK19233
    • Hit length
      1,042 aa
    • E Value
      0E0
    • BLAST Score
      1,997.6 bits
    • Similarity
      95.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAK19233
      100% cov
    • Alignment Length
      1,043 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:209954278
      NP_445920
    • Hit length
      1,040 aa
    • E Value
      0E0
    • BLAST Score
      1,969.9 bits
    • Similarity
      94.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_445920
      100% cov
    • Alignment Length
      1,043 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:133778933
      NP_033045
    • Hit length
      1,040 aa
    • E Value
      0E0
    • BLAST Score
      1,969.1 bits
    • Similarity
      94.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_033045
      100% cov
    • Alignment Length
      1,043 aa
Occurrence
55 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
1,661
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
527
Type
peptide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:151301080
      NP_000527
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,105.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_000527
      100% cov
    • Alignment Length
      527 aa
    • CIGAR string
      527M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:55635871
      XP_521889
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,098.2 bits
    • Similarity
      99.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_521889
      100% cov
    • Alignment Length
      527 aa
    • CIGAR string
      180MN30MN293MN21M mismatches: 3 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332210771
      XP_003254486
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,095.1 bits
    • Similarity
      99.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003254486
      100% cov
    • Alignment Length
      527 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297268083
      XP_001114734
    • Hit length
      532 aa
    • E Value
      0E0
    • BLAST Score
      1,090.5 bits
    • Similarity
      99.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001114734
      99.06% cov
    • Alignment Length
      527 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297688904
      XP_002821912
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,087.8 bits
    • Similarity
      99.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002821912
      100% cov
    • Alignment Length
      527 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296217929
      XP_002755234
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,056.6 bits
    • Similarity
      98.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002755234
      100% cov
    • Alignment Length
      527 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:283837840
      NP_001164612
      1 of 3 hits reported for Oryctolagus cuniculus.
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,021.1 bits
    • Similarity
      96.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001164612
      100% cov
    • Alignment Length
      527 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149725025
      XP_001488023
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,015 bits
    • Similarity
      96.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001488023
      100% cov
    • Alignment Length
      527 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301782261
      XP_002926547
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,013.1 bits
    • Similarity
      95.64%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002926547
      100% cov
    • Alignment Length
      527 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:270483833
      NP_001093998
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,009.6 bits
    • Similarity
      95.26%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001093998
      100% cov
    • Alignment Length
      527 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:190360671
      NP_001121953
    • Hit length
      527 aa
    • E Value
      0E0
    • BLAST Score
      1,005 bits
    • Similarity
      95.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001121953
      100% cov
    • Alignment Length
      527 aa
Occurrence
99 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
1,551
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
509
Type
peptide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:63054850
      NP_004079
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      509 aa
    • E Value
      0E0
    • BLAST Score
      1,056.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_004079
      100% cov
    • Alignment Length
      509 aa
    • CIGAR string
      509M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:55634423
      XP_521569
    • Hit length
      509 aa
    • E Value
      0E0
    • BLAST Score
      1,050.8 bits
    • Similarity
      99.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_521569
      100% cov
    • Alignment Length
      509 aa
    • CIGAR string
      89MN2MN18MN397M mismatches: 3 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297687123
      XP_002821073
    • Hit length
      509 aa
    • E Value
      0E0
    • BLAST Score
      1,042.7 bits
    • Similarity
      99.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002821073
      100% cov
    • Alignment Length
      509 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332212412
      XP_003255313
    • Hit length
      509 aa
    • E Value
      0E0
    • BLAST Score
      1,005.4 bits
    • Similarity
      98.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_003255313
      100% cov
    • Alignment Length
      509 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109090095
      XP_001100878
    • Hit length
      510 aa
    • E Value
      0E0
    • BLAST Score
      1,003.4 bits
    • Similarity
      98.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001100878
      100% cov
    • Alignment Length
      510 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296220892
      XP_002756529
    • Hit length
      510 aa
    • E Value
      0E0
    • BLAST Score
      985.3 bits
    • Similarity
      97.45%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_002756529
      100% cov
    • Alignment Length
      510 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194205814
      XP_001501812
    • Hit length
      509 aa
    • E Value
      0E0
    • BLAST Score
      917.5 bits
    • Similarity
      92.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      XP_001501812
      100% cov
    • Alignment Length
      510 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:281348517
      EFB24101
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      509 aa
    • E Value
      0E0
    • BLAST Score
      906.7 bits
    • Similarity
      91.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EFB24101
      100% cov
    • Alignment Length
      510 aa
  • Lemur catta

    Lemur catta

    • Public DB hit
      GI:139001476
      BAF51673
    • Hit length
      511 aa
    • E Value
      0E0
    • BLAST Score
      899 bits
    • Similarity
      92.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      BAF51673
      100% cov
    • Alignment Length
      511 aa
  • Eulemur macaco

    Eulemur macaco

    • Public DB hit
      GI:150392479
      A4PCD4
    • Hit length
      511 aa
    • E Value
      0E0
    • BLAST Score
      897.9 bits
    • Similarity
      92.17%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      A4PCD4
      100% cov
    • Alignment Length
      511 aa
Occurrence
85 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
3,385
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:37780056
      AY192356
      1 of 4 hits reported for synthetic construct.
    • Hit length
      3,114 bp
    • E Value
      0E0
    • BLAST Score
      4,518 bits
    • Similarity
      93.18%
    • Coverage
      90.87%
    • Alignment (schematic)

      SEQ ID NO 7
      90.87% cov
      AY192356
      98.78% cov
    • Alignment Length
      3,077 bp
    • CIGAR string
      81H22MN8MNMN15MN15M2N10M2N72MN6M3N20MN5MN3M2N21MNMN27MN11MNMN6MN6M2N28M2N3MN11MNMN21MN44MNMN21MN14MNMN9MN29MN18M2N9MN11MNMN12MN20MN38MN41MN5MN8MN26MN12M2N27MNMN12MN57M2N3MN14MN23MN39M2N6MN29MN18M2N45MN26MN5MN14MN41MN20MN45M2N3MN15M2N27MN32MN11MN11MN20MN14MN5MN33M2N3MN30M2N21MN14MN11MN36M2N39MN2MN33M2N6MN32MNMN42MN2MN20MNMNM2N10M2N9MN33M2N28M2N9MN5MN11MN15M2N15MNMN15MNMN21MN38MNMN21MN18M2N3MN95MN11MN47MN8MN68MN24M2N27MN11MNMN15MNMN24MN12M2N9MN29MNMN9MN41MNMNM2N15MN21M2N36MN12M2N3MN27M2N7M2N3MN20MNMN12MNMN10M2N13M2N6MN3MDNMI20MNMN25M2N21MNMN46M2N106M2N46M2N21MN14MN18M3N17MNMN6MN12M2N3MN6M2N3MN5MN14MN20MN14MN2MN21M2N17MN3M228H mismatches: 208 - insertions: 1 - deletions: 1
  • Self-inactivating lentivirus vector pLV.C-EF1a.cyt-bGal.dCpG

    Self-inactivating lentivirus vector pLV.C-EF1a.cyt-bGal.dCpG

    • Public DB hit
      GI:260779788
      GQ853402
    • Hit length
      9,486 bp
    • E Value
      0E0
    • BLAST Score
      2,833.9 bits
    • Similarity
      83.7%
    • Coverage
      89.9%
    • Alignment (schematic)

      SEQ ID NO 7
      89.9% cov
      GQ853402
      32.08% cov
    • Alignment Length
      3,085 bp
  • Cloning vector pLvCmvLacZ.Gfp

    Cloning vector pLvCmvLacZ.Gfp

    • Public DB hit
      GI:124361321
      EF205034
    • Hit length
      11,506 bp
    • E Value
      0E0
    • BLAST Score
      2,833.9 bits
    • Similarity
      83.7%
    • Coverage
      89.9%
    • Alignment (schematic)

      SEQ ID NO 7
      89.9% cov
      EF205034
      26.45% cov
    • Alignment Length
      3,085 bp
  • Cloning vector pCpG-LacZdeltaCpG

    Cloning vector pCpG-LacZdeltaCpG

    • Public DB hit
      GI:33321001
      AF488695
    • Hit length
      5,239 bp
    • E Value
      0E0
    • BLAST Score
      2,833.9 bits
    • Similarity
      83.7%
    • Coverage
      89.9%
    • Alignment (schematic)

      SEQ ID NO 7
      89.9% cov
      AF488695
      58.08% cov
    • Alignment Length
      3,085 bp
  • Gene-trap donor vector pZGs

    Gene-trap donor vector pZGs

    • Public DB hit
      GI:148807251
      EF591490
    • Hit length
      10,662 bp
    • E Value
      0E0
    • BLAST Score
      2,828.3 bits
    • Similarity
      83.66%
    • Coverage
      89.9%
    • Alignment (schematic)

      SEQ ID NO 7
      89.9% cov
      EF591490
      28.54% cov
    • Alignment Length
      3,085 bp
  • Gene-trap donor vector pZGm

    Gene-trap donor vector pZGm

    • Public DB hit
      GI:148807248
      EF591489
    • Hit length
      11,277 bp
    • E Value
      0E0
    • BLAST Score
      2,828.3 bits
    • Similarity
      83.66%
    • Coverage
      89.9%
    • Alignment (schematic)

      SEQ ID NO 7
      89.9% cov
      EF591489
      26.98% cov
    • Alignment Length
      3,085 bp
  • Gene-trap donor vector pZGl

    Gene-trap donor vector pZGl

    • Public DB hit
      GI:148807245
      EF591488
    • Hit length
      11,815 bp
    • E Value
      0E0
    • BLAST Score
      2,828.3 bits
    • Similarity
      83.66%
    • Coverage
      89.9%
    • Alignment (schematic)

      SEQ ID NO 7
      89.9% cov
      EF591488
      25.76% cov
    • Alignment Length
      3,085 bp
  • Exchangeable gene trap vector pU-21W

    Exchangeable gene trap vector pU-21W

    • Public DB hit
      GI:169808049
      AB427140
    • Hit length
      9,333 bp
    • E Value
      0E0
    • BLAST Score
      2,684.3 bits
    • Similarity
      82.89%
    • Coverage
      89.45%
    • Alignment (schematic)

      SEQ ID NO 7
      89.45% cov
      AB427140
      32.44% cov
    • Alignment Length
      3,069 bp
  • Cloning vector pnlslacZ-ACN

    Cloning vector pnlslacZ-ACN

    • Public DB hit
      GI:186703074
      EU530629
    • Hit length
      9,675 bp
    • E Value
      0E0
    • BLAST Score
      2,667.7 bits
    • Similarity
      83.86%
    • Coverage
      83.69%
    • Alignment (schematic)

      SEQ ID NO 7
      83.69% cov
      EU530629
      29.28% cov
    • Alignment Length
      2,869 bp
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
1,022
Type
peptide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Eukaryotic vector pSV-ssTMbgyg

    Eukaryotic vector pSV-ssTMbgyg

    • Public DB hit
      GI:57157820
      BAD83864
    • Hit length
      1,629 aa
    • E Value
      0E0
    • BLAST Score
      2,132.8 bits
    • Similarity
      100%
    • Coverage
      99.22%
    • Alignment (schematic)

      SEQ ID NO 8
      99.22% cov
      BAD83864
      62.25% cov
    • Alignment Length
      1,014 aa
    • CIGAR string
      7H1014M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:16128329
      NP_414878
      1 of 2 hits reported for Escherichia coli str. K-12 substr. MG1655.
    • Hit length
      1,024 aa
    • E Value
      0E0
    • BLAST Score
      2,129.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_414878
      99.8% cov
    • Alignment Length
      1,022 aa
    • CIGAR string
      1022M mismatches: 0 - insertions: 0 - deletions: 0
  • Retroviral signal sequence gene trap vector prvSStrap

    Retroviral signal sequence gene trap vector prvSStrap

    • Public DB hit
      GI:57157779
      BAD83862
    • Hit length
      1,603 aa
    • E Value
      0E0
    • BLAST Score
      2,129.4 bits
    • Similarity
      100%
    • Coverage
      99.22%
    • Alignment (schematic)

      SEQ ID NO 8
      99.22% cov
      BAD83862
      63.26% cov
    • Alignment Length
      1,014 aa
    • CIGAR string
      7H1014M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:1311063
      1BGM_I
      1 of 2 hits reported for Escherichia coli.
    • Hit length
      1,023 aa
    • E Value
      0E0
    • BLAST Score
      2,129.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      1BGM_I
      99.9% cov
    • Alignment Length
      1,022 aa
  • Inducible expression vector pILL2150

    Inducible expression vector pILL2150

    • Public DB hit
      GI:166200688
      ABY84194
    • Hit length
      1,026 aa
    • E Value
      0E0
    • BLAST Score
      2,129 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ABY84194
      99.61% cov
    • Alignment Length
      1,022 aa
  • Cloning vector pCE26

    Cloning vector pCE26

    • Public DB hit
      GI:17473487
      AAL38385
    • Hit length
      1,022 aa
    • E Value
      0E0
    • BLAST Score
      2,128.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAL38385
      100% cov
    • Alignment Length
      1,022 aa
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238903141
      YP_002928937
    • Hit length
      1,080 aa
    • E Value
      0E0
    • BLAST Score
      2,128.2 bits
    • Similarity
      100%
    • Coverage
      99.9%
    • Alignment (schematic)

      SEQ ID NO 8
      99.9% cov
      YP_002928937
      94.54% cov
    • Alignment Length
      1,021 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:37780059
      AAP31129
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,029 aa
    • E Value
      0E0
    • BLAST Score
      2,128.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAP31129
      99.32% cov
    • Alignment Length
      1,022 aa
  • Escherichia coli 1827-70

    Escherichia coli 1827-70

    • Public DB hit
      GI:312970437
      ZP_07784618
    • Hit length
      1,024 aa
    • E Value
      0E0
    • BLAST Score
      2,127.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_07784618
      99.8% cov
    • Alignment Length
      1,022 aa
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700609
      CBI99905
    • Hit length
      1,024 aa
    • E Value
      0E0
    • BLAST Score
      2,127.1 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CBI99905
      99.8% cov
    • Alignment Length
      1,022 aa
  • Promoter screenings vector pMM223

    Promoter screenings vector pMM223

    • Public DB hit
      GI:5668891
      AAD46052
    • Hit length
      1,024 aa
    • E Value
      0E0
    • BLAST Score
      2,126.7 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AAD46052
      99.8% cov
    • Alignment Length
      1,022 aa
  • Escherichia coli MS 116-1

    Escherichia coli MS 116-1

    • Public DB hit
      GI:300948001
      ZP_07162144
      1 of 2 hits reported for Escherichia coli MS 116-1.
    • Hit length
      1,024 aa
    • E Value
      0E0
    • BLAST Score
      2,126.3 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_07162144
      99.8% cov
    • Alignment Length
      1,022 aa
  • Escherichia sp. 4_1_40B

    Escherichia sp. 4_1_40B

    • Public DB hit
      GI:256024032
      ZP_05437897
      1 of 2 hits reported for Escherichia sp. 4_1_40B.
    • Hit length
      1,024 aa
    • E Value
      0E0
    • BLAST Score
      2,126.3 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ZP_05437897
      99.8% cov
    • Alignment Length
      1,022 aa
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:170021276
      YP_001726230
    • Hit length
      1,024 aa
    • E Value
      0E0
    • BLAST Score
      2,125.5 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_001726230
      99.8% cov
    • Alignment Length
      1,022 aa
  • Reporter vector Ganesh-Z1

    Reporter vector Ganesh-Z1

    • Public DB hit
      GI:126143024
      ABN80070
    • Hit length
      1,145 aa
    • E Value
      0E0
    • BLAST Score
      2,125.5 bits
    • Similarity
      100%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 8
      99.61% cov
      ABN80070
      88.91% cov
    • Alignment Length
      1,018 aa
  • Shuttle vector pLvCmvLacZ

    Shuttle vector pLvCmvLacZ

    • Public DB hit
      GI:122893029
      ABM67532
    • Hit length
      1,051 aa
    • E Value
      0E0
    • BLAST Score
      2,122.4 bits
    • Similarity
      100%
    • Coverage
      99.61%
    • Alignment (schematic)

      SEQ ID NO 8
      99.61% cov
      ABM67532
      96.86% cov
    • Alignment Length
      1,018 aa
  • Escherichia coli 53638

    Escherichia coli 53638

    • Public DB hit
      GI:188496259
      ZP_03003529
    • Hit length
      1,048 aa
    • E Value
      0E0
    • BLAST Score
      2,122.1 bits
    • Similarity
      100%
    • Coverage
      99.8%
    • Alignment (schematic)

      SEQ ID NO 8
      99.8% cov
      ZP_03003529
      97.33% cov
    • Alignment Length
      1,020 aa
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
889
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
236
Type
peptide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:49257888
      AAH73775
      1 of 23 hits reported for Homo sapiens.
    • Hit length
      236 aa
    • E Value
      2.24E-122
    • BLAST Score
      443 bits
    • Similarity
      97.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AAH73775
      100% cov
    • Alignment Length
      236 aa
    • CIGAR string
      49MNMN7MN6M2N3MN4MN23MNMN11M2N8MN111M mismatches: 12 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332813743
      XP_001141313
    • Hit length
      236 aa
    • E Value
      3.46E-116
    • BLAST Score
      422.5 bits
    • Similarity
      95.34%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XP_001141313
      100% cov
    • Alignment Length
      236 aa
Occurrence
10 times in PatSeqDB
Tools
PatSeq Finder

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