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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings
101 sequences found in this patent (in total)

Displaying 1 - 10 of 101 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
81
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
85
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
18
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Neurospora crassa OR74A

    Neurospora crassa OR74A

    • Public DB hit
      GI:164423025
      XM_001727960
      1 of 2 hits reported for Neurospora crassa OR74A.
    • Hit length
      1,655 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_001727960
      1.09% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Neurospora discreta

    Neurospora discreta

    • Public DB hit
      GI:256542379
      AC237409
    • Hit length
      46,104 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AC237409
      0.04% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Nitrobacter winogradskyi Nb-255

    Nitrobacter winogradskyi Nb-255

    • Public DB hit
      GI:74419069
      CP000115
    • Hit length
      3,402,093 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000115
      0% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Neurospora crassa

    Neurospora crassa

    • Public DB hit
      GI:15822512
      AY007661
    • Hit length
      2,760 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AY007661
      0.65% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Vitis vinifera

    Vitis vinifera

    • Public DB hit
      GI:147766482
      AM435714
    • Hit length
      9,984 bp
    • E Value
      4.14E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      94.44%
    • Alignment (schematic)

      SEQ ID NO 3
      94.44% cov
      AM435714
      0.17% cov
    • Alignment Length
      17 bp
    • CIGAR string
      1H17M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
13
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
78
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP002797
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP002729
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP002516
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      AP012030
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP002185
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      AM946981
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001855
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      FN649414
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP002167
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001671
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001969
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001846
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      FN554766
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001383
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      AP009378
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      AP010960
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      AP010958
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      AP010953
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001368
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP000819
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001665
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      CP001396
      0% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
  • Escherichia coli O55:H7

    Escherichia coli O55:H7

    • Public DB hit
      GI:226237404
      AB453015
    • Hit length
      171,094 bp
    • E Value
      1.85E-15
    • BLAST Score
      89.8 bits
    • Similarity
      93.55%
    • Coverage
      79.49%
    • Alignment (schematic)

      SEQ ID NO 5
      79.49% cov
      AB453015
      0.03% cov
    • Alignment Length
      62 bp
    • CIGAR string
      16H41M2DM2D16M mismatches: 0 - insertions: 0 - deletions: 4
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
85
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP002797
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP002729
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP002516
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      AP012030
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP002185
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      AM946981
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001855
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      FN649414
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP002167
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001671
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001969
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001846
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      FN554766
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001383
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      AP009378
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      AP010960
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      AP010958
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      AP010953
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001368
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP000819
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001665
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CP001396
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli LF82

    Escherichia coli LF82

    • Public DB hit
      GI:222031834
      CU651637
    • Hit length
      4,773,108 bp
    • E Value
      1.62E-26
    • BLAST Score
      126.7 bits
    • Similarity
      100%
    • Coverage
      80%
    • Alignment (schematic)

      SEQ ID NO 6
      80% cov
      CU651637
      0% cov
    • Alignment Length
      68 bp
    • CIGAR string
      17H68M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
82
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Clostridium acetobutylicum DSM 1731

    Clostridium acetobutylicum DSM 1731

    • Public DB hit
      GI:336289872
      CP002660
    • Hit length
      3,942,462 bp
    • E Value
      1.98E-25
    • BLAST Score
      123 bits
    • Similarity
      100%
    • Coverage
      80.49%
    • Alignment (schematic)

      SEQ ID NO 7
      80.49% cov
      CP002660
      0% cov
    • Alignment Length
      66 bp
    • CIGAR string
      16H66M mismatches: 0 - insertions: 0 - deletions: 0
  • Clostridium acetobutylicum EA 2018

    Clostridium acetobutylicum EA 2018

    • Public DB hit
      GI:325507407
      CP002118
    • Hit length
      3,940,230 bp
    • E Value
      1.98E-25
    • BLAST Score
      123 bits
    • Similarity
      100%
    • Coverage
      80.49%
    • Alignment (schematic)

      SEQ ID NO 7
      80.49% cov
      CP002118
      0% cov
    • Alignment Length
      66 bp
    • CIGAR string
      16H66M mismatches: 0 - insertions: 0 - deletions: 0
  • Clostridium acetobutylicum ATCC 824

    Clostridium acetobutylicum ATCC 824

    • Public DB hit
      GI:25168256
      AE001437
    • Hit length
      3,940,880 bp
    • E Value
      1.98E-25
    • BLAST Score
      123 bits
    • Similarity
      100%
    • Coverage
      80.49%
    • Alignment (schematic)

      SEQ ID NO 7
      80.49% cov
      AE001437
      0% cov
    • Alignment Length
      66 bp
    • CIGAR string
      16H66M mismatches: 0 - insertions: 0 - deletions: 0
  • Clostridium botulinum BKT015925

    Clostridium botulinum BKT015925

    • Public DB hit
      GI:329124738
      CP002410
    • Hit length
      2,773,157 bp
    • E Value
      5.62E-11
    • BLAST Score
      75 bits
    • Similarity
      88.89%
    • Coverage
      73.17%
    • Alignment (schematic)

      SEQ ID NO 7
      73.17% cov
      CP002410
      0% cov
    • Alignment Length
      63 bp
    • CIGAR string
      16H6MI4MIN6MIN6MN4MN30M6H mismatches: 4 - insertions: 3 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
74
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Neurospora crassa OR74A

    Neurospora crassa OR74A

    • Public DB hit
      GI:164423025
      XM_001727960
      1 of 2 hits reported for Neurospora crassa OR74A.
    • Hit length
      1,655 bp
    • E Value
      6.07E-20
    • BLAST Score
      104.5 bits
    • Similarity
      98.33%
    • Coverage
      81.08%
    • Alignment (schematic)

      SEQ ID NO 8
      81.08% cov
      XM_001727960
      3.56% cov
    • Alignment Length
      60 bp
    • CIGAR string
      14H3MD56M mismatches: 0 - insertions: 0 - deletions: 1
  • Neurospora discreta

    Neurospora discreta

    • Public DB hit
      GI:256542379
      AC237409
    • Hit length
      46,104 bp
    • E Value
      6.07E-20
    • BLAST Score
      104.5 bits
    • Similarity
      98.33%
    • Coverage
      81.08%
    • Alignment (schematic)

      SEQ ID NO 8
      81.08% cov
      AC237409
      0.13% cov
    • Alignment Length
      60 bp
    • CIGAR string
      14H3MD56M mismatches: 0 - insertions: 0 - deletions: 1
  • Neurospora crassa

    Neurospora crassa

    • Public DB hit
      GI:15822512
      AY007661
    • Hit length
      2,760 bp
    • E Value
      6.07E-20
    • BLAST Score
      104.5 bits
    • Similarity
      98.33%
    • Coverage
      81.08%
    • Alignment (schematic)

      SEQ ID NO 8
      81.08% cov
      AY007661
      2.14% cov
    • Alignment Length
      60 bp
    • CIGAR string
      14H3MD56M mismatches: 0 - insertions: 0 - deletions: 1
  • Nectria haematococca mpVI 77-13-4

    Nectria haematococca mpVI 77-13-4

    • Public DB hit
      GI:302908134
      XM_003049754
      1 of 2 hits reported for Nectria haematococca mpVI 77-13-4.
    • Hit length
      1,604 bp
    • E Value
      6.11E-15
    • BLAST Score
      87.9 bits
    • Similarity
      94.74%
    • Coverage
      75.68%
    • Alignment (schematic)

      SEQ ID NO 8
      75.68% cov
      XM_003049754
      3.49% cov
    • Alignment Length
      57 bp
    • CIGAR string
      18H46MNI2MD6M mismatches: 1 - insertions: 1 - deletions: 1
  • Verticillium alfalfae VaMs.102

    Verticillium alfalfae VaMs.102

    • Public DB hit
      GI:302405458
      XM_003000520
      1 of 2 hits reported for Verticillium alfalfae VaMs.102.
    • Hit length
      1,421 bp
    • E Value
      6.11E-15
    • BLAST Score
      87.9 bits
    • Similarity
      94.74%
    • Coverage
      75.68%
    • Alignment (schematic)

      SEQ ID NO 8
      75.68% cov
      XM_003000520
      3.94% cov
    • Alignment Length
      57 bp
    • CIGAR string
      18H46MNI2MD6M mismatches: 1 - insertions: 1 - deletions: 1
  • Fusarium solani

    Fusarium solani

    • Public DB hit
      GI:168161
      M33642
    • Hit length
      1,856 bp
    • E Value
      7.96E-9
    • BLAST Score
      67.6 bits
    • Similarity
      92%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 8
      64.86% cov
      M33642
      2.64% cov
    • Alignment Length
      50 bp
    • CIGAR string
      17H7MIN3MD5MI31M9H mismatches: 1 - insertions: 2 - deletions: 1
  • Epichloe festucae

    Epichloe festucae

    • Public DB hit
      GI:224178629
      FJ660615
    • Hit length
      1,776 bp
    • E Value
      1.03E-7
    • BLAST Score
      63.9 bits
    • Similarity
      90.38%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 8
      64.86% cov
      FJ660615
      2.87% cov
    • Alignment Length
      52 bp
    • CIGAR string
      17H8MI3MD3M2IMI32M9H mismatches: 0 - insertions: 4 - deletions: 1
  • Neotyphodium lolii

    Neotyphodium lolii

    • Public DB hit
      GI:125601841
      EF370415
    • Hit length
      3,617 bp
    • E Value
      1.03E-7
    • BLAST Score
      63.9 bits
    • Similarity
      90.38%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 8
      64.86% cov
      EF370415
      1.41% cov
    • Alignment Length
      52 bp
    • CIGAR string
      17H8MI3MD3M2IMI32M9H mismatches: 0 - insertions: 4 - deletions: 1
  • Epichloe typhina

    Epichloe typhina

    • Public DB hit
      GI:125601825
      EF370414
    • Hit length
      4,399 bp
    • E Value
      1.03E-7
    • BLAST Score
      63.9 bits
    • Similarity
      90.38%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 8
      64.86% cov
      EF370414
      1.16% cov
    • Alignment Length
      52 bp
    • CIGAR string
      17H8MI3MD3M2IMI32M9H mismatches: 0 - insertions: 4 - deletions: 1
  • Aspergillus nidulans FGSC A4

    Aspergillus nidulans FGSC A4

    • Public DB hit
      GI:259480592
      BN001302
    • Hit length
      4,011,161 bp
    • E Value
      3.7E-7
    • BLAST Score
      62.1 bits
    • Similarity
      90%
    • Coverage
      63.51%
    • Alignment (schematic)

      SEQ ID NO 8
      63.51% cov
      BN001302
      0% cov
    • Alignment Length
      50 bp
    • CIGAR string
      18H7MI3MD3MIMIN31M9H mismatches: 1 - insertions: 3 - deletions: 1
  • Fusarium oxysporum

    Fusarium oxysporum

    • Public DB hit
      GI:6045152
      AB033416
    • Hit length
      3,321 bp
    • E Value
      3.7E-7
    • BLAST Score
      62.1 bits
    • Similarity
      90%
    • Coverage
      64.86%
    • Alignment (schematic)

      SEQ ID NO 8
      64.86% cov
      AB033416
      1.48% cov
    • Alignment Length
      50 bp
    • CIGAR string
      17H7MIN3MD4MIN31M9H mismatches: 2 - insertions: 2 - deletions: 1
  • Aspergillus nidulans

    Aspergillus nidulans

    • Public DB hit
      GI:39104465
      AB111809
    • Hit length
      1,620 bp
    • E Value
      3.7E-7
    • BLAST Score
      62.1 bits
    • Similarity
      90%
    • Coverage
      63.51%
    • Alignment (schematic)

      SEQ ID NO 8
      63.51% cov
      AB111809
      3.02% cov
    • Alignment Length
      50 bp
    • CIGAR string
      18H7MI3MD3MIMIN31M9H mismatches: 1 - insertions: 3 - deletions: 1
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
76
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Epichloe festucae

    Epichloe festucae

    • Public DB hit
      GI:224178629
      FJ660615
    • Hit length
      1,776 bp
    • E Value
      8.26E-14
    • BLAST Score
      84.2 bits
    • Similarity
      94.55%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      FJ660615
      3.04% cov
    • Alignment Length
      55 bp
    • CIGAR string
      16H16MDNMI35M6H mismatches: 1 - insertions: 1 - deletions: 1
  • Neotyphodium lolii

    Neotyphodium lolii

    • Public DB hit
      GI:125601841
      EF370415
    • Hit length
      3,617 bp
    • E Value
      8.26E-14
    • BLAST Score
      84.2 bits
    • Similarity
      94.55%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      EF370415
      1.49% cov
    • Alignment Length
      55 bp
    • CIGAR string
      16H16MDNMI35M6H mismatches: 1 - insertions: 1 - deletions: 1
  • Epichloe typhina

    Epichloe typhina

    • Public DB hit
      GI:125601825
      EF370414
    • Hit length
      4,399 bp
    • E Value
      8.26E-14
    • BLAST Score
      84.2 bits
    • Similarity
      94.55%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      EF370414
      1.23% cov
    • Alignment Length
      55 bp
    • CIGAR string
      16H16MDNMI35M6H mismatches: 1 - insertions: 1 - deletions: 1
  • Fusarium solani

    Fusarium solani

    • Public DB hit
      GI:168161
      M33642
    • Hit length
      1,856 bp
    • E Value
      2.97E-13
    • BLAST Score
      82.4 bits
    • Similarity
      94.44%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      M33642
      2.8% cov
    • Alignment Length
      54 bp
    • CIGAR string
      16H7MN10M2D34M6H mismatches: 1 - insertions: 0 - deletions: 2
  • Aspergillus nidulans FGSC A4

    Aspergillus nidulans FGSC A4

    • Public DB hit
      GI:259480592
      BN001302
    • Hit length
      4,011,161 bp
    • E Value
      1.07E-12
    • BLAST Score
      80.5 bits
    • Similarity
      91.67%
    • Coverage
      76.32%
    • Alignment (schematic)

      SEQ ID NO 9
      76.32% cov
      BN001302
      0% cov
    • Alignment Length
      60 bp
    • CIGAR string
      17H14MIMDMDN34MI5M1H mismatches: 1 - insertions: 2 - deletions: 2
  • Aspergillus nidulans

    Aspergillus nidulans

    • Public DB hit
      GI:39104465
      AB111809
    • Hit length
      1,620 bp
    • E Value
      1.07E-12
    • BLAST Score
      80.5 bits
    • Similarity
      91.67%
    • Coverage
      76.32%
    • Alignment (schematic)

      SEQ ID NO 9
      76.32% cov
      AB111809
      3.58% cov
    • Alignment Length
      60 bp
    • CIGAR string
      17H14MIMDMDN34MI5M1H mismatches: 1 - insertions: 2 - deletions: 2
  • Podospora anserina S mat+

    Podospora anserina S mat+

    • Public DB hit
      GI:170939242
      CU633865
    • Hit length
      1,013,699 bp
    • E Value
      3.84E-12
    • BLAST Score
      78.7 bits
    • Similarity
      89.23%
    • Coverage
      81.58%
    • Alignment (schematic)

      SEQ ID NO 9
      81.58% cov
      CU633865
      0.01% cov
    • Alignment Length
      65 bp
    • CIGAR string
      13H3MI6MD2MI7M2NMI35MN4M1H mismatches: 3 - insertions: 3 - deletions: 1
  • Fusarium oxysporum

    Fusarium oxysporum

    • Public DB hit
      GI:6045152
      AB033416
    • Hit length
      3,321 bp
    • E Value
      1.38E-11
    • BLAST Score
      76.8 bits
    • Similarity
      92.59%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      AB033416
      1.57% cov
    • Alignment Length
      54 bp
    • CIGAR string
      16H7MN8MDMDN34M6H mismatches: 2 - insertions: 0 - deletions: 2
  • Aspergillus niger

    Aspergillus niger

    • Public DB hit
      GI:134078788
      AM270222
    • Hit length
      188,384 bp
    • E Value
      1.79E-10
    • BLAST Score
      73.1 bits
    • Similarity
      89.83%
    • Coverage
      76.32%
    • Alignment (schematic)

      SEQ ID NO 9
      76.32% cov
      AM270222
      0.03% cov
    • Alignment Length
      59 bp
    • CIGAR string
      17H6MN7M2NM2D34MI5M1H mismatches: 3 - insertions: 1 - deletions: 2
  • Beauveria bassiana

    Beauveria bassiana

    • Public DB hit
      GI:119351366
      EF122790
    • Hit length
      1,896 bp
    • E Value
      1.79E-10
    • BLAST Score
      73.1 bits
    • Similarity
      89.83%
    • Coverage
      75%
    • Alignment (schematic)

      SEQ ID NO 9
      75% cov
      EF122790
      3.06% cov
    • Alignment Length
      59 bp
    • CIGAR string
      16H7MN7MIM2NMD34MI3M3H mismatches: 3 - insertions: 2 - deletions: 1
  • Nectria haematococca mpVI 77-13-4

    Nectria haematococca mpVI 77-13-4

    • Public DB hit
      GI:302908134
      XM_003049754
      1 of 2 hits reported for Nectria haematococca mpVI 77-13-4.
    • Hit length
      1,604 bp
    • E Value
      6.43E-10
    • BLAST Score
      71.3 bits
    • Similarity
      89.66%
    • Coverage
      76.32%
    • Alignment (schematic)

      SEQ ID NO 9
      76.32% cov
      XM_003049754
      3.37% cov
    • Alignment Length
      58 bp
    • CIGAR string
      17H7MD4M2D2MN32MD3MN4M1H mismatches: 2 - insertions: 0 - deletions: 4
  • Verticillium alfalfae VaMs.102

    Verticillium alfalfae VaMs.102

    • Public DB hit
      GI:302405458
      XM_003000520
      1 of 2 hits reported for Verticillium alfalfae VaMs.102.
    • Hit length
      1,421 bp
    • E Value
      6.43E-10
    • BLAST Score
      71.3 bits
    • Similarity
      89.66%
    • Coverage
      76.32%
    • Alignment (schematic)

      SEQ ID NO 9
      76.32% cov
      XM_003000520
      3.8% cov
    • Alignment Length
      58 bp
    • CIGAR string
      17H7MD4M2D2MN32MD3MN4M1H mismatches: 2 - insertions: 0 - deletions: 4
  • Penicillium chrysogenum Wisconsin 54-1255

    Penicillium chrysogenum Wisconsin 54-1255

    • Public DB hit
      GI:211591067
      AM920437
    • Hit length
      6,387,817 bp
    • E Value
      6.43E-10
    • BLAST Score
      71.3 bits
    • Similarity
      90.57%
    • Coverage
      69.74%
    • Alignment (schematic)

      SEQ ID NO 9
      69.74% cov
      AM920437
      0% cov
    • Alignment Length
      53 bp
    • CIGAR string
      17H6MN8M4N34M6H mismatches: 5 - insertions: 0 - deletions: 0
  • Neurospora crassa OR74A

    Neurospora crassa OR74A

    • Public DB hit
      GI:164423025
      XM_001727960
      1 of 2 hits reported for Neurospora crassa OR74A.
    • Hit length
      1,655 bp
    • E Value
      2.31E-9
    • BLAST Score
      69.4 bits
    • Similarity
      90.74%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      XM_001727960
      3.02% cov
    • Alignment Length
      54 bp
    • CIGAR string
      13H3MD7MD4M2D2MN33M9H mismatches: 1 - insertions: 0 - deletions: 4
  • Neurospora discreta

    Neurospora discreta

    • Public DB hit
      GI:256542379
      AC237409
    • Hit length
      46,104 bp
    • E Value
      2.31E-9
    • BLAST Score
      69.4 bits
    • Similarity
      90.74%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      AC237409
      0.11% cov
    • Alignment Length
      54 bp
    • CIGAR string
      13H3MD7MD4M2D2MN33M9H mismatches: 1 - insertions: 0 - deletions: 4
  • Neurospora crassa

    Neurospora crassa

    • Public DB hit
      GI:15822512
      AY007661
    • Hit length
      2,760 bp
    • E Value
      2.31E-9
    • BLAST Score
      69.4 bits
    • Similarity
      90.74%
    • Coverage
      71.05%
    • Alignment (schematic)

      SEQ ID NO 9
      71.05% cov
      AY007661
      1.81% cov
    • Alignment Length
      54 bp
    • CIGAR string
      13H3MD7MD4M2D2MN33M9H mismatches: 1 - insertions: 0 - deletions: 4
  • Talaromyces marneffei ATCC 18224

    Talaromyces marneffei ATCC 18224

    • Public DB hit
      GI:212533212
      XM_002146727
      1 of 2 hits reported for Talaromyces marneffei ATCC 18224.
    • Hit length
      2,558 bp
    • E Value
      8.32E-9
    • BLAST Score
      67.6 bits
    • Similarity
      88.33%
    • Coverage
      76.32%
    • Alignment (schematic)

      SEQ ID NO 9
      76.32% cov
      XM_002146727
      2.23% cov
    • Alignment Length
      60 bp
    • CIGAR string
      16H5MD3MIMN4MIMD2MD34MN3M2H mismatches: 2 - insertions: 2 - deletions: 3
  • Botrytis cinerea T4

    Botrytis cinerea T4

    • Public DB hit
      GI:325974261
      FQ790354
    • Hit length
      763,863 bp
    • E Value
      8.32E-9
    • BLAST Score
      67.6 bits
    • Similarity
      89.09%
    • Coverage
      69.74%
    • Alignment (schematic)

      SEQ ID NO 9
      69.74% cov
      FQ790354
      0.01% cov
    • Alignment Length
      55 bp
    • CIGAR string
      17H6MN7M2I2NMN35M6H mismatches: 4 - insertions: 2 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
75
Type
RNA
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Neurospora crassa

    Neurospora crassa

    • Public DB hit
      GI:38567058
      BX842630
    • Hit length
      127,789 bp
    • E Value
      1.33E-21
    • BLAST Score
      110.1 bits
    • Similarity
      100%
    • Coverage
      78.67%
    • Alignment (schematic)

      SEQ ID NO 10
      78.67% cov
      BX842630
      0.05% cov
    • Alignment Length
      59 bp
    • CIGAR string
      16H59M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder

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