Oligonucleotides For Genotyping Thymidylate Synthase Gene

  • Published: Apr 5, 2011
  • Earliest Priority: Sep 30 2002
  • Family: 16
  • Cited Works: 22
  • Cited by: 2
  • Cites: 7
  • Sequences: 4
  • Additional Info: Cited Works Full text
Data obtained from: USPTO Fulltext EMBL-EBI Pat DDBJ Pat NCBI GenBank
4 sequences found in this patent (in total)

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Download sequences in fasta format: 4 nucleotides

Displaying 4 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
27
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:327180723
      NG_028255
      1 of 25 hits reported for Homo sapiens.
    • Hit length
      22,896 bp
    • E Value
      1.78E-5
    • BLAST Score
      54 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NG_028255
      0.12% cov
    • Alignment Length
      27 bp
    • CIGAR string
      27M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
2
Length
50
Sequence Type
nucleotide
Locations
Claims, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:327180723
      NG_028255
      1 of 23 hits reported for Homo sapiens.
    • Hit length
      22,896 bp
    • E Value
      2.97E-16
    • BLAST Score
      91.7 bits
    • Similarity
      98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NG_028255
      0.22% cov
    • Alignment Length
      50 bp
    • CIGAR string
      40MN9M mismatches: 1 - insertions: 0 - deletions: 0
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:47027613
      AY532285
      1 of 2 hits reported for Gorilla gorilla.
    • Hit length
      158 bp
    • E Value
      1.76E-11
    • BLAST Score
      75.8 bits
    • Similarity
      94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY532285
      31.65% cov
    • Alignment Length
      50 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
3
Length
19
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:327180723
      NG_028255
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      22,896 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NG_028255
      0.08% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:124286878
      AC192398
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      159,957 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AC192398
      0.01% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Branchiostoma floridae

    Branchiostoma floridae

    • Public DB hit
      GI:260833061
      XM_002611430
      1 of 2 hits reported for Branchiostoma floridae.
    • Hit length
      4,228 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      94.74%
    • Alignment (schematic)

      SEQ ID NO 3
      94.74% cov
      XM_002611430
      0.43% cov
    • Alignment Length
      18 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:299888614
      FP102397
    • Hit length
      174,936 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      94.74%
    • Alignment (schematic)

      SEQ ID NO 3
      94.74% cov
      FP102397
      0.01% cov
    • Alignment Length
      18 bp
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
4
Length
20
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:327180723
      NG_028255
      1 of 18 hits reported for Homo sapiens.
    • Hit length
      22,896 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NG_028255
      0.09% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332849743
      XM_001150304
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      1,543 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_001150304
      1.3% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307685172
      AB590362
      1 of 3 hits reported for synthetic construct.
    • Hit length
      956 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AB590362
      2.09% cov
    • Alignment Length
      20 bp
Occurrence
11 times in PatSeqDB
Tools

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