Use Of Novel Virulence-specific Genes As Targets For Diagnosis And Potential Control Of Virulent Strains Of Listeria Monocytogenes

  • Published: May 6, 2008
  • Earliest Priority: Feb 03 2003
  • Family: 2
  • Cited Works: 59
  • Cited by: 3
  • Cites: 9
  • Sequences: 33
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat NCBI GenBank USPTO Fulltext DDBJ Pat
33 sequences found in this patent (in total)

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Download sequences in fasta format: 33 nucleotides

Displaying 1 - 10 of 33 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
949
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      1,753.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001604
      0.03% cov
    • Alignment Length
      949 bp
    • CIGAR string
      949M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      1,753.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001602
      0.03% cov
    • Alignment Length
      949 bp
    • CIGAR string
      949M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16409987
      AL591976
    • Hit length
      250,050 bp
    • E Value
      0E0
    • BLAST Score
      1,753.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AL591976
      0.38% cov
    • Alignment Length
      949 bp
    • CIGAR string
      949M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      0E0
    • BLAST Score
      1,447 bits
    • Similarity
      94.22%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AE017262
      0.03% cov
    • Alignment Length
      951 bp
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      0E0
    • BLAST Score
      1,441.5 bits
    • Similarity
      94.11%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FM242711
      0.03% cov
    • Alignment Length
      951 bp
  • Listeria monocytogenes M7

    Listeria monocytogenes M7

    • Public DB hit
      GI:336021869
      CP002816
    • Hit length
      2,976,163 bp
    • E Value
      0E0
    • BLAST Score
      739.8 bits
    • Similarity
      81.8%
    • Coverage
      93.99%
    • Alignment (schematic)

      SEQ ID NO 1
      93.99% cov
      CP002816
      0.03% cov
    • Alignment Length
      901 bp
  • Listeria monocytogenes L99

    Listeria monocytogenes L99

    • Public DB hit
      GI:307569523
      FM211688
    • Hit length
      2,979,198 bp
    • E Value
      0E0
    • BLAST Score
      739.8 bits
    • Similarity
      81.8%
    • Coverage
      93.99%
    • Alignment (schematic)

      SEQ ID NO 1
      93.99% cov
      FM211688
      0.03% cov
    • Alignment Length
      901 bp
  • Listeria monocytogenes HCC23

    Listeria monocytogenes HCC23

    • Public DB hit
      GI:217332573
      CP001175
    • Hit length
      2,976,212 bp
    • E Value
      0E0
    • BLAST Score
      739.8 bits
    • Similarity
      81.8%
    • Coverage
      93.99%
    • Alignment (schematic)

      SEQ ID NO 1
      93.99% cov
      CP001175
      0.03% cov
    • Alignment Length
      901 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
2
Length
1,470
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16410540
      AL591978
    • Hit length
      250,050 bp
    • E Value
      0E0
    • BLAST Score
      2,715.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AL591978
      0.59% cov
    • Alignment Length
      1,470 bp
    • CIGAR string
      1470M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      2,693.5 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001604
      0.05% cov
    • Alignment Length
      1,470 bp
    • CIGAR string
      184MN474MN467MN119MN222M mismatches: 4 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      2,693.5 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP001602
      0.05% cov
    • Alignment Length
      1,470 bp
    • CIGAR string
      184MN474MN467MN119MN222M mismatches: 4 - insertions: 0 - deletions: 0
  • Listeria seeligeri serovar 1/2b str. SLCC3954

    Listeria seeligeri serovar 1/2b str. SLCC3954

    • Public DB hit
      GI:289169617
      FN557490
    • Hit length
      2,797,636 bp
    • E Value
      0E0
    • BLAST Score
      1,153.4 bits
    • Similarity
      81.25%
    • Coverage
      99.18%
    • Alignment (schematic)

      SEQ ID NO 2
      99.18% cov
      FN557490
      0.05% cov
    • Alignment Length
      1,483 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
3
Length
730
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16409987
      AL591976
    • Hit length
      250,050 bp
    • E Value
      0E0
    • BLAST Score
      1,349.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AL591976
      0.29% cov
    • Alignment Length
      730 bp
    • CIGAR string
      730M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      1,338.1 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001604
      0.02% cov
    • Alignment Length
      730 bp
    • CIGAR string
      117MN182MN429M mismatches: 2 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      1,338.1 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001602
      0.02% cov
    • Alignment Length
      730 bp
    • CIGAR string
      117MN182MN429M mismatches: 2 - insertions: 0 - deletions: 0
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      0E0
    • BLAST Score
      1,188.5 bits
    • Similarity
      96.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FM242711
      0.03% cov
    • Alignment Length
      730 bp
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      0E0
    • BLAST Score
      1,188.5 bits
    • Similarity
      96.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AE017262
      0.03% cov
    • Alignment Length
      730 bp
  • Listeria monocytogenes

    Listeria monocytogenes

    • Public DB hit
      GI:126143321
      EF409984
    • Hit length
      1,473 bp
    • E Value
      0E0
    • BLAST Score
      965.1 bits
    • Similarity
      95.54%
    • Coverage
      83.01%
    • Alignment (schematic)

      SEQ ID NO 3
      83.01% cov
      EF409984
      40.8% cov
    • Alignment Length
      606 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
4
Length
810
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16410252
      AL591977
    • Hit length
      270,050 bp
    • E Value
      0E0
    • BLAST Score
      1,496.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AL591977
      0.3% cov
    • Alignment Length
      810 bp
    • CIGAR string
      810M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      0E0
    • BLAST Score
      1,367.6 bits
    • Similarity
      97.16%
    • Coverage
      99.88%
    • Alignment (schematic)

      SEQ ID NO 4
      99.88% cov
      FM242711
      0.03% cov
    • Alignment Length
      810 bp
    • CIGAR string
      8MN37MN68MN68MN39MN8MDNMI2MN2MN6MN40MN5MN41MN59MN20MN14MNM2N140MN125MN21MN19MN63M1H mismatches: 21 - insertions: 1 - deletions: 1
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      0E0
    • BLAST Score
      1,367.6 bits
    • Similarity
      97.16%
    • Coverage
      99.88%
    • Alignment (schematic)

      SEQ ID NO 4
      99.88% cov
      AE017262
      0.03% cov
    • Alignment Length
      810 bp
    • CIGAR string
      8MN37MN68MN68MN39MN8MDNMI2MN2MN6MN40MN5MN41MN59MN20MN14MNM2N140MN125MN21MN19MN63M1H mismatches: 21 - insertions: 1 - deletions: 1
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
5
Length
960
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16412145
      AL591984
    • Hit length
      225,528 bp
    • E Value
      0E0
    • BLAST Score
      1,773.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AL591984
      0.43% cov
    • Alignment Length
      960 bp
    • CIGAR string
      960M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      1,768.4 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001604
      0.03% cov
    • Alignment Length
      960 bp
    • CIGAR string
      329MN630M mismatches: 1 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      1,768.4 bits
    • Similarity
      99.9%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CP001602
      0.03% cov
    • Alignment Length
      960 bp
    • CIGAR string
      329MN630M mismatches: 1 - insertions: 0 - deletions: 0
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      0E0
    • BLAST Score
      1,668.6 bits
    • Similarity
      98.02%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      FM242711
      0.03% cov
    • Alignment Length
      962 bp
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      0E0
    • BLAST Score
      1,652 bits
    • Similarity
      97.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AE017262
      0.03% cov
    • Alignment Length
      962 bp
  • Listeria welshimeri serovar 6b str. SLCC5334

    Listeria welshimeri serovar 6b str. SLCC5334

    • Public DB hit
      GI:116740300
      AM263198
    • Hit length
      2,814,130 bp
    • E Value
      0E0
    • BLAST Score
      821 bits
    • Similarity
      82.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AM263198
      0.03% cov
    • Alignment Length
      979 bp
  • Listeria seeligeri serovar 1/2b str. SLCC3954

    Listeria seeligeri serovar 1/2b str. SLCC3954

    • Public DB hit
      GI:289169617
      FN557490
    • Hit length
      2,797,636 bp
    • E Value
      7.87E-180
    • BLAST Score
      640.1 bits
    • Similarity
      79.38%
    • Coverage
      98.85%
    • Alignment (schematic)

      SEQ ID NO 5
      98.85% cov
      FN557490
      0.03% cov
    • Alignment Length
      975 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
6
Length
390
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16410540
      AL591978
    • Hit length
      250,050 bp
    • E Value
      0E0
    • BLAST Score
      721.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AL591978
      0.16% cov
    • Alignment Length
      390 bp
    • CIGAR string
      390M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      665.9 bits
    • Similarity
      97.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001604
      0.01% cov
    • Alignment Length
      390 bp
    • CIGAR string
      89MN9MN10MN85MN31MN91MN8MN5MN17MN25MN10M mismatches: 10 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      665.9 bits
    • Similarity
      97.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001602
      0.01% cov
    • Alignment Length
      390 bp
    • CIGAR string
      89MN9MN10MN85MN31MN91MN8MN5MN17MN25MN10M mismatches: 10 - insertions: 0 - deletions: 0
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      1.1E-174
    • BLAST Score
      621.6 bits
    • Similarity
      95.38%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AE017262
      0.01% cov
    • Alignment Length
      390 bp
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      5.12E-173
    • BLAST Score
      616.1 bits
    • Similarity
      95.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FM242711
      0.01% cov
    • Alignment Length
      390 bp
  • Listeria monocytogenes M7

    Listeria monocytogenes M7

    • Public DB hit
      GI:336021869
      CP002816
    • Hit length
      2,976,163 bp
    • E Value
      2.58E-116
    • BLAST Score
      427.7 bits
    • Similarity
      86.67%
    • Coverage
      99.23%
    • Alignment (schematic)

      SEQ ID NO 6
      99.23% cov
      CP002816
      0.01% cov
    • Alignment Length
      390 bp
  • Listeria monocytogenes L99

    Listeria monocytogenes L99

    • Public DB hit
      GI:307569523
      FM211688
    • Hit length
      2,979,198 bp
    • E Value
      2.58E-116
    • BLAST Score
      427.7 bits
    • Similarity
      86.67%
    • Coverage
      99.23%
    • Alignment (schematic)

      SEQ ID NO 6
      99.23% cov
      FM211688
      0.01% cov
    • Alignment Length
      390 bp
  • Listeria monocytogenes HCC23

    Listeria monocytogenes HCC23

    • Public DB hit
      GI:217332573
      CP001175
    • Hit length
      2,976,212 bp
    • E Value
      2.58E-116
    • BLAST Score
      427.7 bits
    • Similarity
      86.67%
    • Coverage
      99.23%
    • Alignment (schematic)

      SEQ ID NO 6
      99.23% cov
      CP001175
      0.01% cov
    • Alignment Length
      390 bp
  • Listeria seeligeri serovar 1/2b str. SLCC3954

    Listeria seeligeri serovar 1/2b str. SLCC3954

    • Public DB hit
      GI:289169617
      FN557490
    • Hit length
      2,797,636 bp
    • E Value
      3.63E-55
    • BLAST Score
      224.6 bits
    • Similarity
      83.87%
    • Coverage
      61.79%
    • Alignment (schematic)

      SEQ ID NO 6
      61.79% cov
      FN557490
      0.01% cov
    • Alignment Length
      248 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
7
Length
4,470
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16409709
      AL591975
    • Hit length
      280,050 bp
    • E Value
      0E0
    • BLAST Score
      8,255.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AL591975
      1.6% cov
    • Alignment Length
      4,470 bp
    • CIGAR string
      4470M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      8,227.9 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001604
      0.15% cov
    • Alignment Length
      4,470 bp
    • CIGAR string
      170MN2566MN1225MN435MN2MN67M mismatches: 5 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      8,227.9 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP001602
      0.15% cov
    • Alignment Length
      4,470 bp
    • CIGAR string
      170MN2566MN1225MN435MN2MN67M mismatches: 5 - insertions: 0 - deletions: 0
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      0E0
    • BLAST Score
      6,794.9 bits
    • Similarity
      94.15%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AE017262
      0.15% cov
    • Alignment Length
      4,479 bp
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      0E0
    • BLAST Score
      6,772.8 bits
    • Similarity
      94.06%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      FM242711
      0.15% cov
    • Alignment Length
      4,480 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
8
Length
1,190
Sequence Type
nucleotide
Locations
Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16411809
      AL591983
    • Hit length
      324,050 bp
    • E Value
      0E0
    • BLAST Score
      2,198.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AL591983
      0.37% cov
    • Alignment Length
      1,190 bp
    • CIGAR string
      1190M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      2,132.2 bits
    • Similarity
      98.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP001604
      0.04% cov
    • Alignment Length
      1,191 bp
    • CIGAR string
      219MN8MN32MD2MIN32MN32MN252MN37MN45MN11M2N509M mismatches: 10 - insertions: 1 - deletions: 1
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      2,132.2 bits
    • Similarity
      98.99%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CP001602
      0.04% cov
    • Alignment Length
      1,191 bp
    • CIGAR string
      219MN8MN32MD2MIN32MN32MN252MN37MN45MN11M2N509M mismatches: 10 - insertions: 1 - deletions: 1
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      0E0
    • BLAST Score
      1,905 bits
    • Similarity
      95.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      FM242711
      0.04% cov
    • Alignment Length
      1,193 bp
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      0E0
    • BLAST Score
      1,888.4 bits
    • Similarity
      95.31%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AE017262
      0.04% cov
    • Alignment Length
      1,194 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
9
Length
2,640
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings
Declared organism
Listeria monocytogenes
Determined organism
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16412145
      AL591984
    • Hit length
      225,528 bp
    • E Value
      0E0
    • BLAST Score
      4,876.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AL591984
      1.17% cov
    • Alignment Length
      2,640 bp
    • CIGAR string
      2640M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      0E0
    • BLAST Score
      4,809.8 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP001604
      0.09% cov
    • Alignment Length
      2,640 bp
    • CIGAR string
      78MN194MN10MN166MN113MN189MN679MN157MN81MN857MN28MN57MN19M mismatches: 12 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      0E0
    • BLAST Score
      4,809.8 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP001602
      0.09% cov
    • Alignment Length
      2,640 bp
    • CIGAR string
      78MN194MN10MN166MN113MN189MN679MN157MN81MN857MN28MN57MN19M mismatches: 12 - insertions: 0 - deletions: 0
  • Listeria monocytogenes serotype 4b str. CLIP 80459

    Listeria monocytogenes serotype 4b str. CLIP 80459

    • Public DB hit
      GI:225875101
      FM242711
    • Hit length
      2,912,690 bp
    • E Value
      0E0
    • BLAST Score
      4,163.5 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FM242711
      0.09% cov
    • Alignment Length
      2,646 bp
  • Listeria monocytogenes serotype 4b str. F2365

    Listeria monocytogenes serotype 4b str. F2365

    • Public DB hit
      GI:83316099
      AE017262
    • Hit length
      2,905,187 bp
    • E Value
      0E0
    • BLAST Score
      3,147.8 bits
    • Similarity
      96.34%
    • Coverage
      72.5%
    • Alignment (schematic)

      SEQ ID NO 9
      72.5% cov
      AE017262
      0.07% cov
    • Alignment Length
      1,915 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
10
Length
20
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Artificial
Determined organism
  • Listeria monocytogenes 08-5923

    Listeria monocytogenes 08-5923

    • Public DB hit
      GI:284058907
      CP001604
    • Hit length
      2,999,054 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001604
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes 08-5578

    Listeria monocytogenes 08-5578

    • Public DB hit
      GI:284055817
      CP001602
    • Hit length
      3,032,288 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001602
      0% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Listeria monocytogenes EGD-e

    Listeria monocytogenes EGD-e

    • Public DB hit
      GI:16409987
      AL591976
    • Hit length
      250,050 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AL591976
      0.01% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
2 times in PatSeqDB
Tools

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