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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
25 sequences found in this patent (in total)

Displaying 1 - 10 of 25 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
2,322
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Pseudomonas sp. HY8N

Determined organism:
  • Pseudomonas sp. 3Y2

    Pseudomonas sp. 3Y2

    • Public DB hit
      GI:54610879
      AY754343
    • Hit length
      2,080 bp
    • E Value
      0E0
    • BLAST Score
      3,214.3 bits
    • Similarity
      94.87%
    • Coverage
      88.67%
    • Alignment (schematic)

      SEQ ID NO 1
      88.67% cov
      AY754343
      98.94% cov
    • Alignment Length
      2,065 bp
    • CIGAR string
      263H21MN2MN11MN2MN23MN2MN2MN2MN50MN2MN38MN15MN11MN42MI8MN20MNMDN19MN2MN12MD12MD3MI17M2N10MN69MN9MN7MN83MN44MN3MNMN20MN53MN5MN40MN9MN5MN6MIMD4MD2MI8MN2MN47MN44MN5MN8MN2MN68MN14MN17MN5MN20MN39MN106MN2MN17MN2MD3MI14MN11MN41MN23MN14MN14MN5MN12MN19MN5MN24MN13MN8MN5MN5MN2MN113MN35MN17MN32MN2MN32MN11MN42MN16MN24MN52MN20MN5MN44MN11MN2MN24MD2MI11MN11MN11MN63MN5MN12MN6MN6MNMN20MN11MN6M mismatches: 93 - insertions: 6 - deletions: 7
  • Pseudomonas sp. MBEL 6-19

    Pseudomonas sp. MBEL 6-19

    • Public DB hit
      GI:222840539
      FJ626663
    • Hit length
      1,680 bp
    • E Value
      0E0
    • BLAST Score
      3,064.7 bits
    • Similarity
      99.58%
    • Coverage
      72.35%
    • Alignment (schematic)

      SEQ ID NO 1
      72.35% cov
      FJ626663
      100% cov
    • Alignment Length
      1,680 bp
    • CIGAR string
      642H836MN44MN26MN92MN2MN231MN307MN135M mismatches: 7 - insertions: 0 - deletions: 0
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:253992019
      CP000094
    • Hit length
      6,438,405 bp
    • E Value
      0E0
    • BLAST Score
      2,678.8 bits
    • Similarity
      87.66%
    • Coverage
      99.83%
    • Alignment (schematic)

      SEQ ID NO 1
      99.83% cov
      CP000094
      0.04% cov
    • Alignment Length
      2,342 bp
    • CIGAR string
      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 mismatches: 239 - insertions: 24 - deletions: 26
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:218137967
      FJ472656
    • Hit length
      5,147 bp
    • E Value
      0E0
    • BLAST Score
      2,429.5 bits
    • Similarity
      86.7%
    • Coverage
      95.43%
    • Alignment (schematic)

      SEQ ID NO 1
      95.43% cov
      FJ472656
      42.76% cov
    • Alignment Length
      2,241 bp
    • CIGAR string
      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 mismatches: 233 - insertions: 25 - deletions: 40
  • Pseudomonas chlororaphis subsp. aureofaciens

    Pseudomonas chlororaphis subsp. aureofaciens

    • Public DB hit
      GI:17402509
      AB049413
    • Hit length
      7,934 bp
    • E Value
      0E0
    • BLAST Score
      2,351.9 bits
    • Similarity
      85.18%
    • Coverage
      99.87%
    • Alignment (schematic)

      SEQ ID NO 1
      99.87% cov
      AB049413
      29.18% cov
    • Alignment Length
      2,348 bp
    • CIGAR string
      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 mismatches: 286 - insertions: 29 - deletions: 33
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      0E0
    • BLAST Score
      2,339 bits
    • Similarity
      85.03%
    • Coverage
      99.87%
    • Alignment (schematic)

      SEQ ID NO 1
      99.87% cov
      CP002585
      0.03% cov
    • Alignment Length
      2,365 bp
    • CIGAR string
      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 mismatches: 281 - insertions: 46 - deletions: 27
  • Pseudomonas sp. 61-3

    Pseudomonas sp. 61-3

    • Public DB hit
      GI:4062966
      AB014758
    • Hit length
      6,029 bp
    • E Value
      0E0
    • BLAST Score
      2,265.1 bits
    • Similarity
      85.28%
    • Coverage
      95.61%
    • Alignment (schematic)

      SEQ ID NO 1
      95.61% cov
      AB014758
      36.81% cov
    • Alignment Length
      2,248 bp
    • CIGAR string
      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 mismatches: 274 - insertions: 28 - deletions: 29
  • Pseudomonas protegens Pf-5

    Pseudomonas protegens Pf-5

    • Public DB hit
      GI:68342549
      CP000076
    • Hit length
      7,074,893 bp
    • E Value
      0E0
    • BLAST Score
      2,250.3 bits
    • Similarity
      84.98%
    • Coverage
      96.6%
    • Alignment (schematic)

      SEQ ID NO 1
      96.6% cov
      CP000076
      0.03% cov
    • Alignment Length
      2,271 bp
    • CIGAR string
      8MNMN4MN8MDN5MN6MD20MN2MNM2N4MDMN4MI5M2N2MI2MD6MN2MN2M2N7MN5MN5MN41MN6MN2M2N3MN2MN4MN4MNMN5MN2MN2MN15MN7MN5MN2MN2MN8M2N13MN9MN6MN2MIMD2MN2MN4MN3MN3MN4MN5MN2MN5MN2MN2MN2MN6MN7MN8MN2M2N20MD2MDM2IMN3MDNMNMIN21MN16MN4MIMDMN2MNMNMNM2N5MN7MN28MI8MN9MN3MN2MN3MDN10MNMN3MDMI6MN25MD2M2I12MN9MN2M2D3MN11MN29MN9M2N4M4N8MN9MN7MN5MN3MN2MD3MI5MN7MN2MN2M2N4MN15MDMIN11MN5M2NMN11MN2MN5MN2MD3MI2MDMIMN5MN8MIMD2MNMN2MN6M3N5MN2MI2MDN5MN12M2N3MN2MN2MN15MNMN2MN5MN2M2N28MN17MN2MN2MNMN3MDMDN2MNM2I4M2NMIN2MD2MN2MN17MN17MN10MN12MN2MN2MN5MN5MN11MN5MN8MN8MN2MN2MN11MN5MN17MN16M2N2MN5MN2MN7MN7M3NM2N23MN2MN8MN12M2N5MN12M2NMN2MN20MN20MN2MN8MN23MN23MN2MN2MN8MN5MN2MD3MI7M2N5MN2MN11MN17MN2MN8MN2MN2MN2MN20MN29MN8MN20MN9MDN3MNMIMN2MN18MN7MN5MN2MN2MN8MN4MNMNMN2MN2MN9MNMN2MN8MN5MN14MN2MN8MN2MN20MN5MN23MN26MN8MN8MN41MN2M2N7MN2MN21MN7MN2MN5MN3MNMN3MI2MD23MN2MN20MN5MN5MN59MN17MN2MN8MN2MN8MN17MN8MN5MN2MN2M2N22MIMNMND3M2N2D4M2I2M2NMN5MDMD3M2NMIMIMN6MN20MN17M2N7MN2MN2MN5M79H mismatches: 282 - insertions: 28 - deletions: 31
  • Pseudomonas mediterranea CFBP 5447

    Pseudomonas mediterranea CFBP 5447

    • Public DB hit
      GI:62637855
      AY910768
    • Hit length
      5,814 bp
    • E Value
      0E0
    • BLAST Score
      2,191.2 bits
    • Similarity
      83.99%
    • Coverage
      99.74%
    • Alignment (schematic)

      SEQ ID NO 1
      99.74% cov
      AY910768
      40.08% cov
    • Alignment Length
      2,368 bp
  • Pseudomonas corrugata

    Pseudomonas corrugata

    • Public DB hit
      GI:62637849
      AY910767
      1 of 3 hits reported for Pseudomonas corrugata.
    • Hit length
      5,809 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      83.77%
    • Coverage
      95.78%
    • Alignment (schematic)

      SEQ ID NO 1
      95.78% cov
      AY910767
      38.56% cov
    • Alignment Length
      2,280 bp
    • CIGAR string
      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 mismatches: 274 - insertions: 56 - deletions: 40
  • Pseudomonas sp. KBOS 17

    Pseudomonas sp. KBOS 17

    • Public DB hit
      GI:55925779
      AY790329
    • Hit length
      4,621 bp
    • E Value
      0E0
    • BLAST Score
      2,014 bits
    • Similarity
      87.12%
    • Coverage
      77.05%
    • Alignment (schematic)

      SEQ ID NO 1
      77.05% cov
      AY790329
      38.74% cov
    • Alignment Length
      1,809 bp
    • CIGAR string
      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 mismatches: 194 - insertions: 20 - deletions: 19
  • Pseudomonas sp. KBOS 03

    Pseudomonas sp. KBOS 03

    • Public DB hit
      GI:55925771
      AY790327
    • Hit length
      4,617 bp
    • E Value
      0E0
    • BLAST Score
      2,008.4 bits
    • Similarity
      87.26%
    • Coverage
      76.4%
    • Alignment (schematic)

      SEQ ID NO 1
      76.4% cov
      AY790327
      38.44% cov
    • Alignment Length
      1,797 bp
    • CIGAR string
      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 mismatches: 184 - insertions: 23 - deletions: 22
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      0E0
    • BLAST Score
      1,986.3 bits
    • Similarity
      82.59%
    • Coverage
      99.53%
    • Alignment (schematic)

      SEQ ID NO 1
      99.53% cov
      AM181176
      0.03% cov
    • Alignment Length
      2,355 bp
  • Pseudomonas chlororaphis

    Pseudomonas chlororaphis

    • Public DB hit
      GI:224593169
      FJ693714
    • Hit length
      1,680 bp
    • E Value
      0E0
    • BLAST Score
      1,740.7 bits
    • Similarity
      85.5%
    • Coverage
      72.35%
    • Alignment (schematic)

      SEQ ID NO 1
      72.35% cov
      FJ693714
      100% cov
    • Alignment Length
      1,697 bp
    • CIGAR string
      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 mismatches: 212 - insertions: 17 - deletions: 17
  • Pseudomonas sp. USM7-7

    Pseudomonas sp. USM7-7

    • Public DB hit
      GI:223470532
      FJ640105
    • Hit length
      1,680 bp
    • E Value
      0E0
    • BLAST Score
      1,707.4 bits
    • Similarity
      85.19%
    • Coverage
      72.35%
    • Alignment (schematic)

      SEQ ID NO 1
      72.35% cov
      FJ640105
      100% cov
    • Alignment Length
      1,701 bp
    • CIGAR string
      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 mismatches: 210 - insertions: 21 - deletions: 21
  • Comamonas testosteroni

    Comamonas testosteroni

    • Public DB hit
      GI:55925767
      AY790326
    • Hit length
      4,569 bp
    • E Value
      0E0
    • BLAST Score
      1,670.5 bits
    • Similarity
      84.46%
    • Coverage
      73.69%
    • Alignment (schematic)

      SEQ ID NO 1
      73.69% cov
      AY790326
      37.45% cov
    • Alignment Length
      1,731 bp
    • CIGAR string
      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 mismatches: 229 - insertions: 20 - deletions: 20
  • Pseudomonas sp. KBOS 04

    Pseudomonas sp. KBOS 04

    • Public DB hit
      GI:55925775
      AY790328
    • Hit length
      4,574 bp
    • E Value
      0E0
    • BLAST Score
      1,659.4 bits
    • Similarity
      84.38%
    • Coverage
      73.56%
    • Alignment (schematic)

      SEQ ID NO 1
      73.56% cov
      AY790328
      37.34% cov
    • Alignment Length
      1,728 bp
    • CIGAR string
      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 mismatches: 230 - insertions: 20 - deletions: 20
  • Pseudomonas extremaustralis 14-3

    Pseudomonas extremaustralis 14-3

    • Public DB hit
      GI:321157876
      FN435843
    • Hit length
      5,092 bp
    • E Value
      0E0
    • BLAST Score
      1,626.2 bits
    • Similarity
      85.05%
    • Coverage
      69.47%
    • Alignment (schematic)

      SEQ ID NO 1
      69.47% cov
      FN435843
      31.66% cov
    • Alignment Length
      1,632 bp
    • CIGAR string
      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 mismatches: 205 - insertions: 19 - deletions: 20
  • Pseudomonas putida GB-1

    Pseudomonas putida GB-1

    • Public DB hit
      GI:166857509
      CP000926
    • Hit length
      6,078,430 bp
    • E Value
      0E0
    • BLAST Score
      1,524.6 bits
    • Similarity
      79.1%
    • Coverage
      99.7%
    • Alignment (schematic)

      SEQ ID NO 1
      99.7% cov
      CP000926
      0.04% cov
    • Alignment Length
      2,383 bp
  • Pseudomonas putida F1

    Pseudomonas putida F1

    • Public DB hit
      GI:148509317
      CP000712
    • Hit length
      5,959,964 bp
    • E Value
      0E0
    • BLAST Score
      1,508 bits
    • Similarity
      78.95%
    • Coverage
      99.57%
    • Alignment (schematic)

      SEQ ID NO 1
      99.57% cov
      CP000712
      0.04% cov
    • Alignment Length
      2,375 bp
  • Pseudomonas putida KT2440

    Pseudomonas putida KT2440

    • Public DB hit
      GI:24987239
      AE015451
    • Hit length
      6,181,863 bp
    • E Value
      0E0
    • BLAST Score
      1,508 bits
    • Similarity
      78.97%
    • Coverage
      99.57%
    • Alignment (schematic)

      SEQ ID NO 1
      99.57% cov
      AE015451
      0.04% cov
    • Alignment Length
      2,377 bp
  • Pseudomonas putida BIRD-1

    Pseudomonas putida BIRD-1

    • Public DB hit
      GI:313496345
      CP002290
    • Hit length
      5,731,541 bp
    • E Value
      0E0
    • BLAST Score
      1,474.7 bits
    • Similarity
      78.72%
    • Coverage
      99.57%
    • Alignment (schematic)

      SEQ ID NO 1
      99.57% cov
      CP002290
      0.04% cov
    • Alignment Length
      2,378 bp
  • Burkholderia caryophylli

    Burkholderia caryophylli

    • Public DB hit
      GI:15028441
      AF394660
    • Hit length
      5,168 bp
    • E Value
      0E0
    • BLAST Score
      1,460 bits
    • Similarity
      81.93%
    • Coverage
      75.8%
    • Alignment (schematic)

      SEQ ID NO 1
      75.8% cov
      AF394660
      34.04% cov
    • Alignment Length
      1,787 bp
    • CIGAR string
      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 mismatches: 268 - insertions: 27 - deletions: 28
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,683
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Pseudomonas sp. HY8N

Determined organism:
  • Pseudomonas sp. 3Y2

    Pseudomonas sp. 3Y2

    • Public DB hit
      GI:54610880
      AY754344
    • Hit length
      2,885 bp
    • E Value
      0E0
    • BLAST Score
      2,621.5 bits
    • Similarity
      94.77%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY754344
      58.34% cov
    • Alignment Length
      1,684 bp
    • CIGAR string
      35MN6M2N31MN37MN29MN38MN41MN8MN8MN5MN11MN17MN8MN26MN25MN18MN11MN104MN14MN6MN10MN2MI2MND5MN10MN3MN11MN9MN37MN8MN8MN56MN20MN14MN53MN15MN4MN29MN8MN26MN11MN5MN14MN8MN17MN11MN3MN13MN2MN8MN2MN56MN26MN2MN29MN5MN20MN50MN2MN32MN14MN8MN23MN41MN14MN9MN8MN4MN29MN11MN32MN6MN16MN5MN2MN3MN67MN8MN35MN8MN2MN22MN4MN20MN10MN22MN49M mismatches: 86 - insertions: 1 - deletions: 1
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:218137967
      FJ472656
      1 of 2 hits reported for Pseudomonas fluorescens.
    • Hit length
      5,147 bp
    • E Value
      0E0
    • BLAST Score
      1,834.8 bits
    • Similarity
      86.48%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      FJ472656
      32.7% cov
    • Alignment Length
      1,701 bp
    • CIGAR string
      8MN5MN3MI4MDN2MDMIMN5MN5M2IMDMD14MN6MN7MN5MN8MDMI2MN4MN2MN8M2NMN3MN14MN4MN3MN4MN2MN2MN2MN8MN5MN2MN2MN2MN2MN9MN4MN2MN8MD3MIMN3MN9M2N6MNMN3MN11MN5MD3MI8MN6MN7MN8MN9MN7MN14MN6MN10MN2MN8MN2MN5MN5MN3MN2MN7MN6MN12MN19MN7MN17MIMD4MN8MD3MI12MN10MIMD10MN9MNMN10M2N2MN11MN8MN18MN16MN11MN8MN20MN11MN3MN5MNMN22MN9MN3MNMN2MD5MI21MN2MN2MN6MN4MN8MN17MN5MN17MN6MNMN11M4N8MN8MN8MN2MN6MNMN5MN14MN8MN5MN8MN2MN2MN4MI4MD8MN8MN8MN2MN2MN11MN2MN5MN14MN2MIMDMN2MN11MN7MN9MN2MN5MN17MN2MN5MN2MN2MN8MN13MN38M2N11MN2MN6MN13MN12MNMN22M2N11MN2M2NMN5MN2MI2MD30MN11MN17MN9MN4MI4MD31MN14MN8MN14MN3MN2MN4MN11MN5MN2MN3MNMNMN34MN4MI2MD13MN4MDM3NMNI5MN11MIMD10MN11MNMN9MN2MN8MN9MN13MN5MN5MNMNMNMN6MNMN3MN10MN5MN20MN5MN21M mismatches: 194 - insertions: 18 - deletions: 18
  • Pseudomonas sp. KBOS 17

    Pseudomonas sp. KBOS 17

    • Public DB hit
      GI:55925779
      AY790329
    • Hit length
      4,621 bp
    • E Value
      0E0
    • BLAST Score
      1,729.6 bits
    • Similarity
      85.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY790329
      36.42% cov
    • Alignment Length
      1,702 bp
    • CIGAR string
      8MN5MN4MI3MN2MDMNMN4MN7M2N9MN36MN2MN7MN8MN11MN2MN6MN4MDMIMN4M2N3MNIMD2MN11MN2MN2MN3MN4MN5MN5MN5MN8MD3MI9MD2MI3MNMN2MN4MN9MN5MN8MN5MN2MN17MN3MD2MI17MN11MN20MN2MN5MN14MN3MN13MN6MN12MD3MI16MN8MNMN11MN2MI2MD15M2N2MN5MN2MN10MI2MD3MN5MN2MI2MD3MN2MN2MN2MN4M2N2MN2MN8MN26M2NMN17M2N16MN5MN20M2N4MN20MN2MN20MN5MN5MN2MN16MN6MN2MN5M2N4MN2MN3MNMN5MN8MN2MN5MN2MN2MN11MN29MN2MN5M2N10MN8MN2MN11MN32MN11MI4MDMN5MN5MN5MN5MN2MN2MN11MN2MN5MN14M2N2MNMN2MNMD2MI10MN2MN5MN2MN2MN5MN2MN2MN5MN2MN11MN5MN5MN2MN2MN17MN20MN29MN6MN7MN2MN5MN2MN8MN14MN8MN2MN8MN2M2NMN2MN6MNMN5MN22MN9MN2MN2MN2MN11MN14MI4MD13MN8MN5MN2MN2MN2MN17MN14MN6MN16MN8MN3MN10MN14MN5MN2MN4MN13MNDMI3MN4MIMNIMD6MDMN11MIMDMN16MN3MNMN9MN9MN4MN7M2N8M2N7MI3MD2MN2M2NMN6MNDMNM2NI10MNMN3MN17MN8MN11MN9M mismatches: 211 - insertions: 19 - deletions: 19
  • Pseudomonas sp. KBOS 03

    Pseudomonas sp. KBOS 03

    • Public DB hit
      GI:55925771
      AY790327
    • Hit length
      4,617 bp
    • E Value
      0E0
    • BLAST Score
      1,668.6 bits
    • Similarity
      84.74%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AY790327
      36.45% cov
    • Alignment Length
      1,704 bp
    • CIGAR string
      8MN5MN4MI3MN2MD2NMN4MN7M2N3MN20MN11MN2MN2MN2MN2MD3MI5MN8MN15MN5MN4MN7MD2MD2MINMI2MN14MN2MN3MN4MN5M2N4MN5MN2MN5MD3MI3MNMN3MD2MI3MNMN2MN2MNMN9MN5MN5MD3MI2MN2MN2MN17MN3MDMI33MN3MN10MN2MN11MN5MN4MIMD3MN2MN13MN3MNMN10MDMI18MN4MN2M2NMN5MN9MN4MN11M2N2MN8MN4MN2MN2MIMD14MN4MN2MN2MN2MN3MN4MN11MN27MNMN17M2N4MN2MN8MN3M2N18MN2M2N4MN20MN2MN20MN5MN5MN2MN16MN6MN2MN6MN4MN2MN3MNMN14MN8MN2MN2MN19MN12MN11MN5M2N10MN11MN29MN5MN8MN2MN2MN4MI4MD2MN5MN17MN2MN3MN10MN2MN5MN8MN8MIMDMN2MNMN6MN2MN2MN4MN3MN8MN2MN2MN8MN2MN8MN3MNMN2MN5MN2MN2MN14MN2MI3MD47MN6MN16MN2MN23MN8MN11MN2M2N4MN2MN2MI2MD6MN14MN7MN3MN2MN2MN2MN17MN14MI4MD4MN2MN23MN5MN32MN2MN3MN4MN2MN5MDM2IMD5MN2MN3MN10MN14MN13MN15MNM3N5M3N2MNMNIMDMN11MIMDMN20MNM2N5MN2MN9MNMN2MN7MIMD9MN16M2NMN5MNM2N14MNM2N2MN5MN11MN8MN11MN9M mismatches: 218 - insertions: 21 - deletions: 21
  • Pseudomonas fluorescens Pf0-1

    Pseudomonas fluorescens Pf0-1

    • Public DB hit
      GI:253992019
      CP000094
    • Hit length
      6,438,405 bp
    • E Value
      0E0
    • BLAST Score
      1,657.6 bits
    • Similarity
      84.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP000094
      0.03% cov
    • Alignment Length
      1,702 bp
    • CIGAR string
      5MN2MN5MN4MI3MN3MDNMN4MN7M2N9MN5MN5MN2MN5MN11MN2MN3MNMN5MN8MN2MN2MN5MN3MN4MD2M2N3MIMN4M2N2M3N12MN5MN3MIMDN2MN9MN4MN5MN8MD3MI5MN5MN3MNMN7MN15MN2MN2MD3MI2MN5MN14MN2MN3MDMI9MN23MN4MN6MI2NMD2MN11MN5MN5MN3MN13MN6MN4MN7MN18MIMDMN2MN3MNMN15MN4MN11M2N2MN8MNMN8MIMD10MN3MN4MN2MN2MN7M2N2MN2MN5MN2MN27MNMN14MN2M2N4MN11MN3M2N15MN8MN6MN16MN2MN20MN8MD3MNMIN20MN2MN8M2N4MN6MNMN14MN8MN2MN2MN14MN17MN5MN5MN5M2N10MN11MN2MN26MN14MN2MN2MN4MI4MD2MDMI4MN8MN3MN4MN2MN11MN2MN2MN20M2NMIMD2MN3MN9MN2MN8MN2MN2MN2MN2MN2MN11MN2MN5MN8MN8MN20MN35MN2MN11MN2MN3MN43MN4MN3MN8MN5M2NMN2MN2MN3MI2MD24MN3MN9MN20MN9MN4MN8MN26MN5MN32MN2MN8MN2MN8MN5MN2MN3MN10MN2MN11MN12M2N3MN9MNMN3MN4MIMNIMDMD3MN2MN8MN2MIMDMN21M3N8MN9MN12MIMD3MNMN3MN7MN3MNMNM3NMN7M2N3MN10MNIMND17MN5MN5MN2MN2MN5MN9M mismatches: 224 - insertions: 19 - deletions: 19
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      0E0
    • BLAST Score
      1,546.8 bits
    • Similarity
      83.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CP002585
      0.02% cov
    • Alignment Length
      1,703 bp
    • CIGAR string
      8MN5MN3MI4MDNMI2MDMN3MN4MN3MD2MI21MNMN15MN4MN3MNMN2MN2MN8MN2MN4M2N2MN3MN5MN4MN7M2N2MN2MN5MN5MN5MN11MN2MN3MN10MN8MN11MD3MI4MIMD2MN4MN3MN2M2NMN3MI2MD8MN2MN2MN2MN14MN23MNMN20MN8MN15MN2MN8MN17MN5MN2MN10MD2MI7MN9MN7M2NMN16MN9MN2MN2M2N2MN10MN2MN2MN2MIMD13MN5MN2MN9M3N5MN2MN2MN2MN9MNMN2MN5MIMD7MN17M2N4MN11MN3M2NMI2MD5MN8MN2M2N4MN3MN5MNMN8MN13MN9MN5MN5M2I2M2D16MN3MN2MN2MN5M2N4M3N4MN7MN8MN2MN2MN5MN5MN14MNMN3MN5MN2MN17MN11MN11MN20MN5MN2MN2MD4MI7MN2MN8MN6MN13MN3MN4MN2MN3MN4MN2MN20MN8MIMDMN7MN4MNMN2MN3M2N6MN8MN2MN2MN17MN8M2NMN2MN2MN9MN5M2N3MN24MN9MDMI6MN7MN6MN19MN8MN14MN3M2N3MN10MD2MNMNMIN2MN2MN3MN30MN6MN2MN20MI3MD6MN4MI3MD2MN2MN2MN5MN5MN4MN9MN2MN32MN11MN8M4N5MN2MN2M2N10MN5MN8MN12M2N3MN2MN2MN7MNMN5MNMN6MNMN11MIMD24MN6MN2MN2MN8MNMN15MN8MN2MN5MN2M2NMN8MN3MN2MNMN6MIMD3MN2MN2MN2M2N4MN2MN2MN5MN2MN2MN2MN12M mismatches: 242 - insertions: 20 - deletions: 20
  • Pseudomonas chlororaphis subsp. aureofaciens

    Pseudomonas chlororaphis subsp. aureofaciens

    • Public DB hit
      GI:17402509
      AB049413
    • Hit length
      7,934 bp
    • E Value
      0E0
    • BLAST Score
      1,535.7 bits
    • Similarity
      83.58%
    • Coverage
      98.22%
    • Alignment (schematic)

      SEQ ID NO 2
      98.22% cov
      AB049413
      20.83% cov
    • Alignment Length
      1,669 bp
    • CIGAR string
      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 mismatches: 242 - insertions: 16 - deletions: 16
  • Pseudomonas sp. KBOS 04

    Pseudomonas sp. KBOS 04

    • Public DB hit
      GI:55925775
      AY790328
    • Hit length
      4,574 bp
    • E Value
      0E0
    • BLAST Score
      1,469.2 bits
    • Similarity
      83%
    • Coverage
      98.22%
    • Alignment (schematic)

      SEQ ID NO 2
      98.22% cov
      AY790328
      36.14% cov
    • Alignment Length
      1,682 bp
    • CIGAR string
      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 mismatches: 228 - insertions: 29 - deletions: 29
  • Pseudomonas extremaustralis 14-3

    Pseudomonas extremaustralis 14-3

    • Public DB hit
      GI:321157876
      FN435843
    • Hit length
      5,092 bp
    • E Value
      0E0
    • BLAST Score
      1,452.6 bits
    • Similarity
      82.81%
    • Coverage
      98.22%
    • Alignment (schematic)

      SEQ ID NO 2
      98.22% cov
      FN435843
      32.46% cov
    • Alignment Length
      1,681 bp
    • CIGAR string
      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 mismatches: 233 - insertions: 28 - deletions: 28
  • Pseudomonas sp. USM7-7

    Pseudomonas sp. USM7-7

    • Public DB hit
      GI:223470534
      FJ640106
    • Hit length
      1,683 bp
    • E Value
      0E0
    • BLAST Score
      1,424.9 bits
    • Similarity
      82.55%
    • Coverage
      98.22%
    • Alignment (schematic)

      SEQ ID NO 2
      98.22% cov
      FJ640106
      98.22% cov
    • Alignment Length
      1,685 bp
    • CIGAR string
      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 mismatches: 230 - insertions: 32 - deletions: 32
  • Pseudomonas fluorescens SBW25

    Pseudomonas fluorescens SBW25

    • Public DB hit
      GI:229359445
      AM181176
    • Hit length
      6,722,539 bp
    • E Value
      0E0
    • BLAST Score
      1,391.6 bits
    • Similarity
      82.15%
    • Coverage
      98.22%
    • Alignment (schematic)

      SEQ ID NO 2
      98.22% cov
      AM181176
      0.02% cov
    • Alignment Length
      1,681 bp
    • CIGAR string
      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 mismatches: 244 - insertions: 28 - deletions: 28
  • Comamonas testosteroni

    Comamonas testosteroni

    • Public DB hit
      GI:55925767
      AY790326
    • Hit length
      4,569 bp
    • E Value
      0E0
    • BLAST Score
      1,378.7 bits
    • Similarity
      82.17%
    • Coverage
      97.27%
    • Alignment (schematic)

      SEQ ID NO 2
      97.27% cov
      AY790326
      35.83% cov
    • Alignment Length
      1,666 bp
    • CIGAR string
      46H7MN2MN4MN3MN2MN8MDMIMN8MD2MN3MI2MN2M2N2M2N3MN3MN3MN3MN3MN5MN4MN5MN5MN2MN2MN3MN2M3N5MN11MN6MN10MN3MN5MD2NMI7MN2MN3MNMN6MDMI3MN3MNMN3MDMIN5MD3MINMN2MN2MN35M3NMNDMI11MN2MN4MNMN5MI3MD13MN15MN5MN10MN2MN5MN7MD3MI6MN3MN4MN9MNMI2MD12MN6MN10MIMDMDMI2MNMN3MN4MN3MNMI2MD7MNMN3MN4MN2MN2MN4MN2MN3MN2MN2MN2MN2MN27MNMN14MN2M2N16MN5MN20M2N4MN2MN3MN2MN10MN2MN17MN2MN5MN5M2NMN11MN4MN6MN2MN3MNMN5MN6MNMN5MN8MN2MN5MN2MN2MN11MN5MN11MN3MN10MN2MN2M2N19MN2MN11MN14MN17MN11MI4MDMN5MN5MN5M2N3MDMNMNMI10MI3MNDM2N2MNMND4MIMN7M2N2MNMN2MNMD2MI10MN2MN5MN2MN2MN5MN2MN2MN5MN2MN11MN5MN5MN2MN2MN17MN20MN29MN6MN7MN2MN5MN2MN8MN2MN11MN8MN8MN14MN3MN16MN9MN10MN23MI4MD10MN11MN5MN14MN5MN2MN11MN20MN2MNMN6MN2MN8MN5MN2MN3MN10MN3MNMN8MN12M2N3MN2MN2MNMN7MN5M2N2IMD3MND2MN11MDMNMI19MD3MI3MN2MN2MN9M2D3MIMI3MN3MIMN2MD5MNDMI9MNM2N3M3N6MIMND2MN5MN5MD7MIMN11MN2MN8MNMN7MNMN2MN6M mismatches: 239 - insertions: 29 - deletions: 29
  • Pseudomonas resinovorans

    Pseudomonas resinovorans

    • Public DB hit
      GI:10835918
      AF129396
    • Hit length
      5,442 bp
    • E Value
      0E0
    • BLAST Score
      1,075.9 bits
    • Similarity
      80.07%
    • Coverage
      89.13%
    • Alignment (schematic)

      SEQ ID NO 2
      89.13% cov
      AF129396
      27.56% cov
    • Alignment Length
      1,535 bp
    • CIGAR string
      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 mismatches: 236 - insertions: 35 - deletions: 35
  • Pseudomonas mendocina ymp

    Pseudomonas mendocina ymp

    • Public DB hit
      GI:145573243
      CP000680
    • Hit length
      5,072,807 bp
    • E Value
      0E0
    • BLAST Score
      1,044.5 bits
    • Similarity
      79.87%
    • Coverage
      88.29%
    • Alignment (schematic)

      SEQ ID NO 2
      88.29% cov
      CP000680
      0.03% cov
    • Alignment Length
      1,525 bp
    • CIGAR string
      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 mismatches: 229 - insertions: 39 - deletions: 39
  • Pseudomonas stutzeri

    Pseudomonas stutzeri

    • Public DB hit
      GI:30721689
      AY278219
    • Hit length
      4,746 bp
    • E Value
      0E0
    • BLAST Score
      1,038.9 bits
    • Similarity
      79.75%
    • Coverage
      88.47%
    • Alignment (schematic)

      SEQ ID NO 2
      88.47% cov
      AY278219
      31.37% cov
    • Alignment Length
      1,526 bp
    • CIGAR string
      183H5M2N4MN14MDMI2N11MN2MDNMIN7MN6M2NMN3MI2MD5MN5MN2MN2MN6MN7MN2MN3MDMI12M2NMD2NMNMI12MN3MIMNMD2MINMN2MD2MN11MN4MNMI3MN2M2DMI2M2NMN4MN3MN3MN2MN22MN9MN7M2NMN6M3N7MN6MD2MNM2N3MI2MDMI8MN4MN5MIMD10MN3MN5MNMN2MN2MNMN2MN3MN2MN5MN2MN2MIMINMD3MDMN3M2N4MD2MI2MN38MN3M2N12MI3MD5MNI2MDM2N9MNMN29MN2MN2MN2M2DMN2MNIMIMN2MN13MN3MN2MN9MN4MN6MNMN14MN5MNM2N2MN8MN5MN7MN6MDMN2MI4MN2MDMN2MI2MNMI2MNDMN6MN2MN9MI2M3ND2MN9MNMN11MN2MN2MN8MN2MN15MN4MN8MN3MN5MNIMD2M2N7MN2MN3MN4MN8MN8MIMDMN2MN10M2N2MN11MN12MN23M3N2MN8MN20MN14MN5MN2M2N9MN5M2N8MN6MNMN6MN10MN8MN14MN8MN14MN5MN2MN3MN2MNMN20MN2MN4M2NI4MND5MN2MN2MN12MNMN6MDMNI6MNMN2MN5MN23MN8MN2MN14MN5M2N5MN7MN5MN2MN5M2N5MN10MN3MNMN8MN11MIMND3MN2MN2MN9MDMI3MIMNIMD4MND2MNMNMND2MIMN2MIMDMN9MN8M2N2MN3MIMDMN2MN9MN4MN7M2N10MIMD5MN4MN3M4N7MNIMD4MN2MN3MNMN5M2N4MN3MIMD6MN8MN2MN7M11H mismatches: 235 - insertions: 37 - deletions: 37
  • Pseudomonas mendocina NK-01

    Pseudomonas mendocina NK-01

    • Public DB hit
      GI:328915200
      CP002620
    • Hit length
      5,434,353 bp
    • E Value
      0E0
    • BLAST Score
      1,027.9 bits
    • Similarity
      79.61%
    • Coverage
      88.83%
    • Alignment (schematic)

      SEQ ID NO 2
      88.83% cov
      CP002620
      0.03% cov
    • Alignment Length
      1,535 bp
    • CIGAR string
      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 mismatches: 233 - insertions: 40 - deletions: 40
  • Pseudomonas mendocina

    Pseudomonas mendocina

    • Public DB hit
      GI:182638935
      EU580408
      1 of 2 hits reported for Pseudomonas mendocina.
    • Hit length
      2,412 bp
    • E Value
      0E0
    • BLAST Score
      1,027.9 bits
    • Similarity
      79.61%
    • Coverage
      88.83%
    • Alignment (schematic)

      SEQ ID NO 2
      88.83% cov
      EU580408
      61.98% cov
    • Alignment Length
      1,535 bp
    • CIGAR string
      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 mismatches: 233 - insertions: 40 - deletions: 40
  • Pseudomonas sp. USM4-55

    Pseudomonas sp. USM4-55

    • Public DB hit
      GI:161344525
      EU275728
    • Hit length
      6,085 bp
    • E Value
      0E0
    • BLAST Score
      983.5 bits
    • Similarity
      79.1%
    • Coverage
      88.83%
    • Alignment (schematic)

      SEQ ID NO 2
      88.83% cov
      EU275728
      24.57% cov
    • Alignment Length
      1,536 bp
    • CIGAR string
      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 mismatches: 239 - insertions: 41 - deletions: 41
  • Pseudomonas syringae pv. tomato str. DC3000

    Pseudomonas syringae pv. tomato str. DC3000

    • Public DB hit
      GI:28856110
      AE016853
    • Hit length
      6,397,126 bp
    • E Value
      0E0
    • BLAST Score
      950.3 bits
    • Similarity
      77.78%
    • Coverage
      97.15%
    • Alignment (schematic)

      SEQ ID NO 2
      97.15% cov
      AE016853
      0.03% cov
    • Alignment Length
      1,683 bp
    • CIGAR string
      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 mismatches: 281 - insertions: 48 - deletions: 45
  • Pseudomonas nitroreducens

    Pseudomonas nitroreducens

    • Public DB hit
      GI:19589601
      AF336849
    • Hit length
      5,618 bp
    • E Value
      0E0
    • BLAST Score
      944.8 bits
    • Similarity
      78.69%
    • Coverage
      88.29%
    • Alignment (schematic)

      SEQ ID NO 2
      88.29% cov
      AF336849
      26.45% cov
    • Alignment Length
      1,525 bp
    • CIGAR string
      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 mismatches: 247 - insertions: 39 - deletions: 39
  • Pseudomonas pseudoalcaligenes

    Pseudomonas pseudoalcaligenes

    • Public DB hit
      GI:15421134
      AY043314
    • Hit length
      5,616 bp
    • E Value
      0E0
    • BLAST Score
      944.8 bits
    • Similarity
      78.69%
    • Coverage
      88.29%
    • Alignment (schematic)

      SEQ ID NO 2
      88.29% cov
      AY043314
      26.46% cov
    • Alignment Length
      1,525 bp
    • CIGAR string
      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 mismatches: 247 - insertions: 39 - deletions: 39
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:20069349
      AF491940
    • Hit length
      1,683 bp
    • E Value
      0E0
    • BLAST Score
      941.1 bits
    • Similarity
      80.78%
    • Coverage
      73.38%
    • Alignment (schematic)

      SEQ ID NO 2
      73.38% cov
      AF491940
      73.38% cov
    • Alignment Length
      1,259 bp
    • CIGAR string
      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 mismatches: 194 - insertions: 24 - deletions: 24
  • Pseudomonas oleovorans

    Pseudomonas oleovorans

    • Public DB hit
      GI:151441
      M58445
    • Hit length
      6,455 bp
    • E Value
      0E0
    • BLAST Score
      924.4 bits
    • Similarity
      78.28%
    • Coverage
      90.85%
    • Alignment (schematic)

      SEQ ID NO 2
      90.85% cov
      M58445
      23.69% cov
    • Alignment Length
      1,579 bp
    • CIGAR string
      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 mismatches: 243 - insertions: 50 - deletions: 50
Occurrence
97 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
42
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Pseudomonas sp. 3Y2

    Pseudomonas sp. 3Y2

    • Public DB hit
      GI:54610879
      AY754343
    • Hit length
      2,080 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 3
      71.43% cov
      AY754343
      1.44% cov
    • Alignment Length
      30 bp
    • CIGAR string
      12H30M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
42
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Pseudomonas sp. MBEL 6-19

    Pseudomonas sp. MBEL 6-19

    • Public DB hit
      GI:222840539
      FJ626663
    • Hit length
      1,680 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 4
      71.43% cov
      FJ626663
      1.79% cov
    • Alignment Length
      30 bp
    • CIGAR string
      12H30M mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas brassicacearum subsp. brassicacearum NFM421

    Pseudomonas brassicacearum subsp. brassicacearum NFM421

    • Public DB hit
      GI:327374765
      CP002585
    • Hit length
      6,843,248 bp
    • E Value
      1.94E-4
    • BLAST Score
      52 bits
    • Similarity
      96.67%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 4
      71.43% cov
      CP002585
      0% cov
    • Alignment Length
      30 bp
    • CIGAR string
      12H21MN8M mismatches: 1 - insertions: 0 - deletions: 0
  • Pseudomonas sp. KBOS 03

    Pseudomonas sp. KBOS 03

    • Public DB hit
      GI:55925771
      AY790327
    • Hit length
      4,617 bp
    • E Value
      7.66E-4
    • BLAST Score
      50.1 bits
    • Similarity
      96.55%
    • Coverage
      69.05%
    • Alignment (schematic)

      SEQ ID NO 4
      69.05% cov
      AY790327
      0.63% cov
    • Alignment Length
      29 bp
    • CIGAR string
      13H5MN23M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
42
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Pseudomonas sp. KBOS 17

    Pseudomonas sp. KBOS 17

    • Public DB hit
      GI:55925779
      AY790329
    • Hit length
      4,621 bp
    • E Value
      1.94E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      61.9%
    • Alignment (schematic)

      SEQ ID NO 5
      61.9% cov
      AY790329
      0.56% cov
    • Alignment Length
      26 bp
    • CIGAR string
      12H26M4H mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas sp. KBOS 04

    Pseudomonas sp. KBOS 04

    • Public DB hit
      GI:55925775
      AY790328
    • Hit length
      4,574 bp
    • E Value
      1.94E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      61.9%
    • Alignment (schematic)

      SEQ ID NO 5
      61.9% cov
      AY790328
      0.57% cov
    • Alignment Length
      26 bp
    • CIGAR string
      12H26M4H mismatches: 0 - insertions: 0 - deletions: 0
  • Pseudomonas sp. KBOS 03

    Pseudomonas sp. KBOS 03

    • Public DB hit
      GI:55925771
      AY790327
    • Hit length
      4,617 bp
    • E Value
      1.94E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      61.9%
    • Alignment (schematic)

      SEQ ID NO 5
      61.9% cov
      AY790327
      0.56% cov
    • Alignment Length
      26 bp
    • CIGAR string
      12H26M4H mismatches: 0 - insertions: 0 - deletions: 0
  • Comamonas testosteroni

    Comamonas testosteroni

    • Public DB hit
      GI:55925767
      AY790326
    • Hit length
      4,569 bp
    • E Value
      1.94E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      61.9%
    • Alignment (schematic)

      SEQ ID NO 5
      61.9% cov
      AY790326
      0.57% cov
    • Alignment Length
      26 bp
  • Pseudomonas sp. 3Y2

    Pseudomonas sp. 3Y2

    • Public DB hit
      GI:54610880
      AY754344
    • Hit length
      2,885 bp
    • E Value
      1.94E-4
    • BLAST Score
      52 bits
    • Similarity
      100%
    • Coverage
      61.9%
    • Alignment (schematic)

      SEQ ID NO 5
      61.9% cov
      AY754344
      0.9% cov
    • Alignment Length
      26 bp
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
42
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Pseudomonas sp. 3Y2

    Pseudomonas sp. 3Y2

    • Public DB hit
      GI:54610880
      AY754344
    • Hit length
      2,885 bp
    • E Value
      1.29E-8
    • BLAST Score
      65.9 bits
    • Similarity
      97.3%
    • Coverage
      88.1%
    • Alignment (schematic)

      SEQ ID NO 6
      88.1% cov
      AY754344
      1.28% cov
    • Alignment Length
      37 bp
    • CIGAR string
      5H29MN7M mismatches: 1 - insertions: 0 - deletions: 0
  • Pseudomonas chlororaphis subsp. aureofaciens

    Pseudomonas chlororaphis subsp. aureofaciens

    • Public DB hit
      GI:17402509
      AB049413
    • Hit length
      7,934 bp
    • E Value
      7.66E-4
    • BLAST Score
      50.1 bits
    • Similarity
      96.55%
    • Coverage
      69.05%
    • Alignment (schematic)

      SEQ ID NO 6
      69.05% cov
      AB049413
      0.37% cov
    • Alignment Length
      29 bp
    • CIGAR string
      10H20MN8M3H mismatches: 1 - insertions: 0 - deletions: 0
  • Pseudomonas sp. 61-3

    Pseudomonas sp. 61-3

    • Public DB hit
      GI:4062966
      AB014758
    • Hit length
      6,029 bp
    • E Value
      7.66E-4
    • BLAST Score
      50.1 bits
    • Similarity
      96.55%
    • Coverage
      69.05%
    • Alignment (schematic)

      SEQ ID NO 6
      69.05% cov
      AB014758
      0.48% cov
    • Alignment Length
      29 bp
    • CIGAR string
      10H23MN5M3H mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
7,253
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Recombineering donor plasmid pDOC-P

    Recombineering donor plasmid pDOC-P

    • Public DB hit
      GI:260505750
      GQ889497
    • Hit length
      7,949 bp
    • E Value
      0E0
    • BLAST Score
      6,628.7 bits
    • Similarity
      100%
    • Coverage
      49.48%
    • Alignment (schematic)

      SEQ ID NO 7
      49.48% cov
      GQ889497
      45.15% cov
    • Alignment Length
      3,589 bp
    • CIGAR string
      3664H3589M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pEX100T

    Cloning vector pEX100T

    • Public DB hit
      GI:603175
      U17500
    • Hit length
      5,846 bp
    • E Value
      0E0
    • BLAST Score
      6,628.7 bits
    • Similarity
      100%
    • Coverage
      49.48%
    • Alignment (schematic)

      SEQ ID NO 7
      49.48% cov
      U17500
      61.39% cov
    • Alignment Length
      3,589 bp
    • CIGAR string
      3664H3589M mismatches: 0 - insertions: 0 - deletions: 0
  • Gene deletion vector pEX100Tlink

    Gene deletion vector pEX100Tlink

    • Public DB hit
      GI:59894876
      AY906830
    • Hit length
      6,168 bp
    • E Value
      0E0
    • BLAST Score
      6,621.4 bits
    • Similarity
      100%
    • Coverage
      49.43%
    • Alignment (schematic)

      SEQ ID NO 7
      49.43% cov
      AY906830
      58.12% cov
    • Alignment Length
      3,585 bp
    • CIGAR string
      3668H3585M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-G

    Recombineering donor plasmid pDOC-G

    • Public DB hit
      GI:260505755
      GQ889498
    • Hit length
      7,943 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      49.4%
    • Alignment (schematic)

      SEQ ID NO 7
      49.4% cov
      GQ889498
      45.11% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      3670H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-F

    Recombineering donor plasmid pDOC-F

    • Public DB hit
      GI:260505746
      GQ889496
    • Hit length
      7,444 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      49.4%
    • Alignment (schematic)

      SEQ ID NO 7
      49.4% cov
      GQ889496
      48.13% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      3670H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-H

    Recombineering donor plasmid pDOC-H

    • Public DB hit
      GI:260505742
      GQ889495
    • Hit length
      7,250 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      49.4%
    • Alignment (schematic)

      SEQ ID NO 7
      49.4% cov
      GQ889495
      49.42% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      3670H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-C

    Recombineering donor plasmid pDOC-C

    • Public DB hit
      GI:260505739
      GQ889494
    • Hit length
      5,911 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      49.4%
    • Alignment (schematic)

      SEQ ID NO 7
      49.4% cov
      GQ889494
      60.62% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      3670H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pMQ150

    Cloning vector pMQ150

    • Public DB hit
      GI:171194032
      EU546823
    • Hit length
      8,116 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      EU546823
      43.85% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pCPP5333

    Cloning vector pCPP5333

    • Public DB hit
      GI:154814538
      EU024543
    • Hit length
      7,567 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      EU024543
      47.03% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Shuttle/allelic-replacement vector pMQ75

    Shuttle/allelic-replacement vector pMQ75

    • Public DB hit
      GI:77819867
      DQ230319
    • Hit length
      7,353 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      DQ230319
      48.4% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Shuttle/allelic-replacement vector pMQ83

    Shuttle/allelic-replacement vector pMQ83

    • Public DB hit
      GI:77819862
      DQ230318
    • Hit length
      7,972 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      DQ230318
      44.64% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Shuttle/allelic-replacement vector pMQ30

    Shuttle/allelic-replacement vector pMQ30

    • Public DB hit
      GI:77819857
      DQ230317
    • Hit length
      7,454 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      DQ230317
      47.75% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18T

    Cloning vector pEX18T

    • Public DB hit
      GI:2218142
      AF004910
    • Hit length
      5,842 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      AF004910
      60.92% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18Tc

    Cloning vector pEX18Tc

    • Public DB hit
      GI:2961144
      AF047519
    • Hit length
      6,349 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      AF047519
      56.06% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18Gm

    Cloning vector pEX18Gm

    • Public DB hit
      GI:2961140
      AF047518
    • Hit length
      5,831 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      AF047518
      61.04% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18ApGW

    Cloning vector pEX18ApGW

    • Public DB hit
      GI:60547279
      AY928469
    • Hit length
      7,553 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      49.12%
    • Alignment (schematic)

      SEQ ID NO 7
      49.12% cov
      AY928469
      47.12% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      3690H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pUCSce

    Cloning vector pUCSce

    • Public DB hit
      GI:603172
      U17499
    • Hit length
      2,686 bp
    • E Value
      0E0
    • BLAST Score
      4,181.9 bits
    • Similarity
      100%
    • Coverage
      31.21%
    • Alignment (schematic)

      SEQ ID NO 7
      31.21% cov
      U17499
      84.29% cov
    • Alignment Length
      2,264 bp
    • CIGAR string
      2264M4989H mismatches: 0 - insertions: 0 - deletions: 0
  • unidentified cloning vector

    unidentified cloning vector

    • Public DB hit
      GI:2293130
      U89964
    • Hit length
      4,473 bp
    • E Value
      0E0
    • BLAST Score
      4,141.3 bits
    • Similarity
      100%
    • Coverage
      30.91%
    • Alignment (schematic)

      SEQ ID NO 7
      30.91% cov
      U89964
      50.12% cov
    • Alignment Length
      2,242 bp
    • CIGAR string
      2242M5011H mismatches: 0 - insertions: 0 - deletions: 0
  • Plastid transformation vector pKMS8

    Plastid transformation vector pKMS8

    • Public DB hit
      GI:308157537
      HQ023426
    • Hit length
      7,407 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      30.93%
    • Alignment (schematic)

      SEQ ID NO 7
      30.93% cov
      HQ023426
      30.28% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5010H mismatches: 1 - insertions: 0 - deletions: 0
  • Tobacco plastid transformation vector pSS42

    Tobacco plastid transformation vector pSS42

    • Public DB hit
      GI:295149390
      GU980700
    • Hit length
      8,282 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      30.93%
    • Alignment (schematic)

      SEQ ID NO 7
      30.93% cov
      GU980700
      27.08% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5010H mismatches: 1 - insertions: 0 - deletions: 0
  • Tobacco plastid transformation vector pSS33

    Tobacco plastid transformation vector pSS33

    • Public DB hit
      GI:295149387
      GU980699
    • Hit length
      8,504 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      30.93%
    • Alignment (schematic)

      SEQ ID NO 7
      30.93% cov
      GU980699
      26.38% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5010H mismatches: 1 - insertions: 0 - deletions: 0
  • Cyanobacterial shuttle vector pAQJ4-MCS(C)

    Cyanobacterial shuttle vector pAQJ4-MCS(C)

    • Public DB hit
      GI:223019694
      AB480232
    • Hit length
      5,878 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      100%
    • Coverage
      30.88%
    • Alignment (schematic)

      SEQ ID NO 7
      30.88% cov
      AB480232
      38.11% cov
    • Alignment Length
      2,240 bp
    • CIGAR string
      2240M5013H mismatches: 0 - insertions: 0 - deletions: 0
  • Cyanobacterial shuttle vector pAQJ4-MCS

    Cyanobacterial shuttle vector pAQJ4-MCS

    • Public DB hit
      GI:223019692
      AB480231
    • Hit length
      5,878 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      100%
    • Coverage
      30.88%
    • Alignment (schematic)

      SEQ ID NO 7
      30.88% cov
      AB480231
      38.11% cov
    • Alignment Length
      2,240 bp
    • CIGAR string
      2240M5013H mismatches: 0 - insertions: 0 - deletions: 0
  • Plastid transformation vector pPRV131B

    Plastid transformation vector pPRV131B

    • Public DB hit
      GI:160419741
      EU224428
    • Hit length
      8,080 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      30.93%
    • Alignment (schematic)

      SEQ ID NO 7
      30.93% cov
      EU224428
      27.76% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5010H mismatches: 1 - insertions: 0 - deletions: 0
  • Plastid transformation vector pPRV131A

    Plastid transformation vector pPRV131A

    • Public DB hit
      GI:160419739
      EU224427
    • Hit length
      8,080 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      30.93%
    • Alignment (schematic)

      SEQ ID NO 7
      30.93% cov
      EU224427
      27.76% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5010H mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
42
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Klebsiella oxytoca

    Klebsiella oxytoca

    • Public DB hit
      GI:336390240
      HQ651093
    • Hit length
      5,201 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ651093
      0.58% cov
    • Alignment Length
      30 bp
    • CIGAR string
      12H30M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:335058182
      HQ730120
      1 of 6 hits reported for Escherichia coli.
    • Hit length
      4,988 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ730120
      0.6% cov
    • Alignment Length
      30 bp
    • CIGAR string
      12H30M mismatches: 0 - insertions: 0 - deletions: 0
  • Klebsiella pneumoniae

    Klebsiella pneumoniae

    • Public DB hit
      GI:335058165
      HQ730118
      1 of 2 hits reported for Klebsiella pneumoniae.
    • Hit length
      12,317 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ730118
      0.24% cov
    • Alignment Length
      30 bp
  • Pseudomonas aeruginosa

    Pseudomonas aeruginosa

    • Public DB hit
      GI:335335057
      HQ634775
    • Hit length
      7,834 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ634775
      0.38% cov
    • Alignment Length
      30 bp
  • Proteus mirabilis

    Proteus mirabilis

    • Public DB hit
      GI:298104555
      GQ891753
    • Hit length
      11,194 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      GQ891753
      0.27% cov
    • Alignment Length
      30 bp
  • Salmonella enterica subsp. enterica serovar Typhimurium

    Salmonella enterica subsp. enterica serovar Typhimurium

    • Public DB hit
      GI:332144563
      AB571796
      1 of 3 hits reported for Salmonella enterica subsp. enterica serovar Typhimurium.
    • Hit length
      7,193 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      AB571796
      0.42% cov
    • Alignment Length
      30 bp
  • Salmonella enterica subsp. enterica serovar Dublin

    Salmonella enterica subsp. enterica serovar Dublin

    • Public DB hit
      GI:327536632
      JF267652
      1 of 2 hits reported for Salmonella enterica subsp. enterica serovar Dublin.
    • Hit length
      88,505 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      JF267652
      0.03% cov
    • Alignment Length
      30 bp
  • Aeromonas hydrophila

    Aeromonas hydrophila

    • Public DB hit
      GI:327335548
      HQ326183
    • Hit length
      4,275 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ326183
      0.7% cov
    • Alignment Length
      30 bp
  • Baculovirus expression/transfer vector pFB-ZB

    Baculovirus expression/transfer vector pFB-ZB

    • Public DB hit
      GI:326370964
      JF682518
    • Hit length
      6,990 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      JF682518
      0.43% cov
    • Alignment Length
      30 bp
  • Cloning vector pVEX2172

    Cloning vector pVEX2172

    • Public DB hit
      GI:326367529
      JF311902
    • Hit length
      2,854 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      JF311902
      1.05% cov
    • Alignment Length
      30 bp
  • Acinetobacter baumannii

    Acinetobacter baumannii

    • Public DB hit
      GI:325301787
      JF262175
      1 of 2 hits reported for Acinetobacter baumannii.
    • Hit length
      2,361 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      JF262175
      1.27% cov
    • Alignment Length
      30 bp
  • Pseudomonas fluorescens

    Pseudomonas fluorescens

    • Public DB hit
      GI:325491814
      HQ832469
    • Hit length
      1,239 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ832469
      2.42% cov
    • Alignment Length
      30 bp
  • Aeromonas media

    Aeromonas media

    • Public DB hit
      GI:323709107
      HQ170516
      1 of 2 hits reported for Aeromonas media.
    • Hit length
      3,735 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ170516
      0.8% cov
    • Alignment Length
      30 bp
  • Aeromonas caviae

    Aeromonas caviae

    • Public DB hit
      GI:323709101
      HQ170515
    • Hit length
      3,954 bp
    • E Value
      7.95E-7
    • BLAST Score
      60 bits
    • Similarity
      100%
    • Coverage
      71.43%
    • Alignment (schematic)

      SEQ ID NO 8
      71.43% cov
      HQ170515
      0.76% cov
    • Alignment Length
      30 bp
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
45
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
9 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
8,093
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
  • Recombineering donor plasmid pDOC-P

    Recombineering donor plasmid pDOC-P

    • Public DB hit
      GI:260505750
      GQ889497
    • Hit length
      7,949 bp
    • E Value
      0E0
    • BLAST Score
      6,628.7 bits
    • Similarity
      100%
    • Coverage
      44.35%
    • Alignment (schematic)

      SEQ ID NO 10
      44.35% cov
      GQ889497
      45.15% cov
    • Alignment Length
      3,589 bp
    • CIGAR string
      4504H3589M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pEX100T

    Cloning vector pEX100T

    • Public DB hit
      GI:603175
      U17500
    • Hit length
      5,846 bp
    • E Value
      0E0
    • BLAST Score
      6,628.7 bits
    • Similarity
      100%
    • Coverage
      44.35%
    • Alignment (schematic)

      SEQ ID NO 10
      44.35% cov
      U17500
      61.39% cov
    • Alignment Length
      3,589 bp
    • CIGAR string
      4504H3589M mismatches: 0 - insertions: 0 - deletions: 0
  • Gene deletion vector pEX100Tlink

    Gene deletion vector pEX100Tlink

    • Public DB hit
      GI:59894876
      AY906830
    • Hit length
      6,168 bp
    • E Value
      0E0
    • BLAST Score
      6,621.4 bits
    • Similarity
      100%
    • Coverage
      44.3%
    • Alignment (schematic)

      SEQ ID NO 10
      44.3% cov
      AY906830
      58.12% cov
    • Alignment Length
      3,585 bp
    • CIGAR string
      4508H3585M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-G

    Recombineering donor plasmid pDOC-G

    • Public DB hit
      GI:260505755
      GQ889498
    • Hit length
      7,943 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      44.27%
    • Alignment (schematic)

      SEQ ID NO 10
      44.27% cov
      GQ889498
      45.11% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      4510H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-F

    Recombineering donor plasmid pDOC-F

    • Public DB hit
      GI:260505746
      GQ889496
    • Hit length
      7,444 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      44.27%
    • Alignment (schematic)

      SEQ ID NO 10
      44.27% cov
      GQ889496
      48.13% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      4510H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-H

    Recombineering donor plasmid pDOC-H

    • Public DB hit
      GI:260505742
      GQ889495
    • Hit length
      7,250 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      44.27%
    • Alignment (schematic)

      SEQ ID NO 10
      44.27% cov
      GQ889495
      49.42% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      4510H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Recombineering donor plasmid pDOC-C

    Recombineering donor plasmid pDOC-C

    • Public DB hit
      GI:260505739
      GQ889494
    • Hit length
      5,911 bp
    • E Value
      0E0
    • BLAST Score
      6,617.7 bits
    • Similarity
      100%
    • Coverage
      44.27%
    • Alignment (schematic)

      SEQ ID NO 10
      44.27% cov
      GQ889494
      60.62% cov
    • Alignment Length
      3,583 bp
    • CIGAR string
      4510H3583M mismatches: 0 - insertions: 0 - deletions: 0
  • Cloning vector pMQ150

    Cloning vector pMQ150

    • Public DB hit
      GI:171194032
      EU546823
    • Hit length
      8,116 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      EU546823
      43.85% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pCPP5333

    Cloning vector pCPP5333

    • Public DB hit
      GI:154814538
      EU024543
    • Hit length
      7,567 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      EU024543
      47.03% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Shuttle/allelic-replacement vector pMQ75

    Shuttle/allelic-replacement vector pMQ75

    • Public DB hit
      GI:77819867
      DQ230319
    • Hit length
      7,353 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      DQ230319
      48.4% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Shuttle/allelic-replacement vector pMQ83

    Shuttle/allelic-replacement vector pMQ83

    • Public DB hit
      GI:77819862
      DQ230318
    • Hit length
      7,972 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      DQ230318
      44.64% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Shuttle/allelic-replacement vector pMQ30

    Shuttle/allelic-replacement vector pMQ30

    • Public DB hit
      GI:77819857
      DQ230317
    • Hit length
      7,454 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      DQ230317
      47.75% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18T

    Cloning vector pEX18T

    • Public DB hit
      GI:2218142
      AF004910
    • Hit length
      5,842 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      AF004910
      60.92% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18Tc

    Cloning vector pEX18Tc

    • Public DB hit
      GI:2961144
      AF047519
    • Hit length
      6,349 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      AF047519
      56.06% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18Gm

    Cloning vector pEX18Gm

    • Public DB hit
      GI:2961140
      AF047518
    • Hit length
      5,831 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      AF047518
      61.04% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pEX18ApGW

    Cloning vector pEX18ApGW

    • Public DB hit
      GI:60547279
      AY928469
    • Hit length
      7,553 bp
    • E Value
      0E0
    • BLAST Score
      6,554.9 bits
    • Similarity
      99.89%
    • Coverage
      44.03%
    • Alignment (schematic)

      SEQ ID NO 10
      44.03% cov
      AY928469
      47.12% cov
    • Alignment Length
      3,563 bp
    • CIGAR string
      4530H624MD2MD2M2D2931M mismatches: 0 - insertions: 0 - deletions: 4
  • Cloning vector pUCSce

    Cloning vector pUCSce

    • Public DB hit
      GI:603172
      U17499
    • Hit length
      2,686 bp
    • E Value
      0E0
    • BLAST Score
      4,181.9 bits
    • Similarity
      100%
    • Coverage
      27.97%
    • Alignment (schematic)

      SEQ ID NO 10
      27.97% cov
      U17499
      84.29% cov
    • Alignment Length
      2,264 bp
    • CIGAR string
      2264M5829H mismatches: 0 - insertions: 0 - deletions: 0
  • unidentified cloning vector

    unidentified cloning vector

    • Public DB hit
      GI:2293130
      U89964
    • Hit length
      4,473 bp
    • E Value
      0E0
    • BLAST Score
      4,141.3 bits
    • Similarity
      100%
    • Coverage
      27.7%
    • Alignment (schematic)

      SEQ ID NO 10
      27.7% cov
      U89964
      50.12% cov
    • Alignment Length
      2,242 bp
    • CIGAR string
      2242M5851H mismatches: 0 - insertions: 0 - deletions: 0
  • Plastid transformation vector pKMS8

    Plastid transformation vector pKMS8

    • Public DB hit
      GI:308157537
      HQ023426
    • Hit length
      7,407 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      27.72%
    • Alignment (schematic)

      SEQ ID NO 10
      27.72% cov
      HQ023426
      30.28% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5850H mismatches: 1 - insertions: 0 - deletions: 0
  • Tobacco plastid transformation vector pSS42

    Tobacco plastid transformation vector pSS42

    • Public DB hit
      GI:295149390
      GU980700
    • Hit length
      8,282 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      27.72%
    • Alignment (schematic)

      SEQ ID NO 10
      27.72% cov
      GU980700
      27.08% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5850H mismatches: 1 - insertions: 0 - deletions: 0
  • Tobacco plastid transformation vector pSS33

    Tobacco plastid transformation vector pSS33

    • Public DB hit
      GI:295149387
      GU980699
    • Hit length
      8,504 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      27.72%
    • Alignment (schematic)

      SEQ ID NO 10
      27.72% cov
      GU980699
      26.38% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5850H mismatches: 1 - insertions: 0 - deletions: 0
  • Cyanobacterial shuttle vector pAQJ4-MCS(C)

    Cyanobacterial shuttle vector pAQJ4-MCS(C)

    • Public DB hit
      GI:223019694
      AB480232
    • Hit length
      5,878 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      100%
    • Coverage
      27.68%
    • Alignment (schematic)

      SEQ ID NO 10
      27.68% cov
      AB480232
      38.11% cov
    • Alignment Length
      2,240 bp
    • CIGAR string
      2240M5853H mismatches: 0 - insertions: 0 - deletions: 0
  • Cyanobacterial shuttle vector pAQJ4-MCS

    Cyanobacterial shuttle vector pAQJ4-MCS

    • Public DB hit
      GI:223019692
      AB480231
    • Hit length
      5,878 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      100%
    • Coverage
      27.68%
    • Alignment (schematic)

      SEQ ID NO 10
      27.68% cov
      AB480231
      38.11% cov
    • Alignment Length
      2,240 bp
    • CIGAR string
      2240M5853H mismatches: 0 - insertions: 0 - deletions: 0
  • Plastid transformation vector pPRV131B

    Plastid transformation vector pPRV131B

    • Public DB hit
      GI:160419741
      EU224428
    • Hit length
      8,080 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      27.72%
    • Alignment (schematic)

      SEQ ID NO 10
      27.72% cov
      EU224428
      27.76% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5850H mismatches: 1 - insertions: 0 - deletions: 0
  • Plastid transformation vector pPRV131A

    Plastid transformation vector pPRV131A

    • Public DB hit
      GI:160419739
      EU224427
    • Hit length
      8,080 bp
    • E Value
      0E0
    • BLAST Score
      4,137.6 bits
    • Similarity
      99.96%
    • Coverage
      27.72%
    • Alignment (schematic)

      SEQ ID NO 10
      27.72% cov
      EU224427
      27.76% cov
    • Alignment Length
      2,243 bp
    • CIGAR string
      508MN1734M5850H mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
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