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Search for Biological Sequences disclosed in Patents

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Data obtained from: USPTO Fulltext
128 sequences found in this patent (in total)

Displaying 1 - 10 of 128 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
5,777
Type
nucleotide
Locations
Claims, Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:31431
      X51602
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      7,680 bp
    • E Value
      0E0
    • BLAST Score
      10,669.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      X51602
      75.22% cov
    • Alignment Length
      5,777 bp
    • CIGAR string
      5777M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332841102
      XM_509605
    • Hit length
      7,122 bp
    • E Value
      0E0
    • BLAST Score
      10,399.6 bits
    • Similarity
      99.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_509605
      81.24% cov
    • Alignment Length
      5,787 bp
    • CIGAR string
      78MI2MI126MI97MN68MN703MN18MN62MN127MN14MN269MN41MN165MN21MN316MN14MN449MN20MN280MN491MN50MN23MN8MN485MN32MN44MN72MN266MN56M4I158MN67MN25MD26MN49MI20MNMN24MN23MN169MN96MN53MN17MN143MN46MNM2I276MN146M mismatches: 39 - insertions: 10 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332242185
      XM_003270218
    • Hit length
      7,106 bp
    • E Value
      0E0
    • BLAST Score
      9,984.1 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_003270218
      81.33% cov
    • Alignment Length
      5,791 bp
    • CIGAR string
      32MN45MI2MI87M3I31MN7MI16MN19MN16MN112MN24MN47MN198MN9MN76MN41MN305MN7MN60M2N123MN66MN33MNMN32MN75MN41MN13MN68MN101MN15MNMN10M2N14MN43MN80MN247MN2MN127MN321MN79MN146MN74MN155MN12MN85MN17MN98MN35MN41MN14MN26MN5MN68MN200MN44MN14MN123MN34MN74MN32MN119MN45MN7MN24MN22MN95M2D65MN6MN49M6I50MN43MN31MN51MN10MNMNMN5MN52MD53MN9MN11MD58M5D2MD2MD2MN48MN16MN18MN2MI15M3N64MN55MN68MN23MI3MD16MN68MN74MN6MN39MN4MN111MN24MN22MN6MN27MN43MN33MN146M mismatches: 98 - insertions: 14 - deletions: 12
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297693767
      XM_002824129
    • Hit length
      4,828 bp
    • E Value
      0E0
    • BLAST Score
      8,357.2 bits
    • Similarity
      98.15%
    • Coverage
      82.81%
    • Alignment (schematic)

      SEQ ID NO 1
      82.81% cov
      XM_002824129
      99.44% cov
    • Alignment Length
      4,810 bp
    • CIGAR string
      32MN45MI2MI87M3I39MI2N92MN71MN72MN354MN278MN69MN121MN8MN83MN11MN54MN61MN77MN229MN106MIM4I5MI9MI12MI12MI60MNMN17MN51MD15MI38MN84MNMNMD2MI54MN18MIM2I44MN76MN116MN32MN12MN79MN221MN168MN85MN17MN134MN83MN74MN384MN92MN16MN32MN119MN45MN32MN37MN67MN79MN36MD19M5I46M3D96MN12MN26MN3MN7MI3MN9MN28MN12MD45MD29MD33M993H mismatches: 54 - insertions: 26 - deletions: 9
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297274183
      XM_001117928
    • Hit length
      4,590 bp
    • E Value
      0E0
    • BLAST Score
      7,746 bits
    • Similarity
      97.27%
    • Coverage
      79%
    • Alignment (schematic)

      SEQ ID NO 1
      79% cov
      XM_001117928
      99.65% cov
    • Alignment Length
      4,578 bp
    • CIGAR string
      15MN9M2N31MN3MN2MN12MI2MI65MN9MN11M3I4MN6MN5MDMI20MI36MN12M2N2MN33MDMI45MN31MN3MN49MN18MN16MN7MN53MN8M2N176MN16MN2MN65M2N13MN62MN11MN105MN85MN69MN60MIMD32MN35MN5MN26MN17MN47MN26MN5MN2MN14MN62MN47MN17MN11MN47MN10MN17MN5MN21MN10MN40MN13MN58MN47MN27MN50MN77MN5MN120MN71MN46MN55MN6MN149MN117MN67MN11M2N145MN74MN113MN54MN70MN14MN17MN50MN140MN26MN74MN83MN173MN126MN7MN19MN81MN32MN92MN26MN7MN37MN32MN80MN8MN6MN39MN31MN14MNMN36MD19M5I99MN3MN6MN13MN17M1213H mismatches: 107 - insertions: 14 - deletions: 4
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168278137
      AB385191
    • Hit length
      4,031 bp
    • E Value
      0E0
    • BLAST Score
      7,402.5 bits
    • Similarity
      99.88%
    • Coverage
      69.64%
    • Alignment (schematic)

      SEQ ID NO 1
      69.64% cov
      AB385191
      99.8% cov
    • Alignment Length
      4,023 bp
    • CIGAR string
      240H3MN2MN2336MN868MN397MN412M1514H mismatches: 5 - insertions: 0 - deletions: 0
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194221810
      XM_001492325
    • Hit length
      4,618 bp
    • E Value
      0E0
    • BLAST Score
      6,056.3 bits
    • Similarity
      90.79%
    • Coverage
      78.55%
    • Alignment (schematic)

      SEQ ID NO 1
      78.55% cov
      XM_001492325
      98.57% cov
    • Alignment Length
      4,584 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296203626
      XM_002748924
    • Hit length
      3,735 bp
    • E Value
      0E0
    • BLAST Score
      5,777.4 bits
    • Similarity
      95.88%
    • Coverage
      61.81%
    • Alignment (schematic)

      SEQ ID NO 1
      61.81% cov
      XM_002748924
      95.53% cov
    • Alignment Length
      3,572 bp
    • CIGAR string
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mismatches: 142 - insertions: 1 - deletions: 4
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73993481
      XM_534520
    • Hit length
      4,308 bp
    • E Value
      0E0
    • BLAST Score
      5,518.9 bits
    • Similarity
      89.89%
    • Coverage
      74.42%
    • Alignment (schematic)

      SEQ ID NO 1
      74.42% cov
      XM_534520
      99.81% cov
    • Alignment Length
      4,323 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301782098
      XM_002926420
    • Hit length
      4,080 bp
    • E Value
      0E0
    • BLAST Score
      5,038.8 bits
    • Similarity
      89.17%
    • Coverage
      70.16%
    • Alignment (schematic)

      SEQ ID NO 1
      70.16% cov
      XM_002926420
      99.41% cov
    • Alignment Length
      4,081 bp
Occurrence
110 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
1,338
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:31432
      CAA35946
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      1,338 aa
    • E Value
      0E0
    • BLAST Score
      2,791.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CAA35946
      100% cov
    • Alignment Length
      1,338 aa
    • CIGAR string
      1338M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168278138
      BAG11047
    • Hit length
      1,338 aa
    • E Value
      0E0
    • BLAST Score
      2,786.5 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      BAG11047
      100% cov
    • Alignment Length
      1,338 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114649218
      XP_509605
    • Hit length
      1,338 aa
    • E Value
      0E0
    • BLAST Score
      2,777.3 bits
    • Similarity
      99.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_509605
      100% cov
    • Alignment Length
      1,338 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332242186
      XP_003270266
    • Hit length
      1,338 aa
    • E Value
      0E0
    • BLAST Score
      2,744.9 bits
    • Similarity
      99.25%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_003270266
      100% cov
    • Alignment Length
      1,338 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297274184
      XP_001117928
    • Hit length
      1,338 aa
    • E Value
      0E0
    • BLAST Score
      2,679.8 bits
    • Similarity
      98.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001117928
      100% cov
    • Alignment Length
      1,338 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297693768
      XP_002824175
    • Hit length
      1,342 aa
    • E Value
      0E0
    • BLAST Score
      2,657.5 bits
    • Similarity
      98.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002824175
      100% cov
    • Alignment Length
      1,342 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149730119
      XP_001492375
    • Hit length
      1,336 aa
    • E Value
      0E0
    • BLAST Score
      2,474.5 bits
    • Similarity
      95.59%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001492375
      100% cov
    • Alignment Length
      1,338 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73993482
      XP_534520
    • Hit length
      1,337 aa
    • E Value
      0E0
    • BLAST Score
      2,454.9 bits
    • Similarity
      95.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_534520
      100% cov
    • Alignment Length
      1,338 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301782099
      XP_002926466
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      1,324 aa
    • E Value
      0E0
    • BLAST Score
      2,402.5 bits
    • Similarity
      93.86%
    • Coverage
      98.58%
    • Alignment (schematic)

      SEQ ID NO 2
      98.58% cov
      XP_002926466
      99.7% cov
    • Alignment Length
      1,320 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296203627
      XP_002748970
    • Hit length
      1,244 aa
    • E Value
      0E0
    • BLAST Score
      2,340.5 bits
    • Similarity
      97.31%
    • Coverage
      88.86%
    • Alignment (schematic)

      SEQ ID NO 2
      88.86% cov
      XP_002748970
      95.5% cov
    • Alignment Length
      1,189 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291410380
      XP_002721476
    • Hit length
      1,335 aa
    • E Value
      0E0
    • BLAST Score
      2,322.7 bits
    • Similarity
      92.87%
    • Coverage
      98.43%
    • Alignment (schematic)

      SEQ ID NO 2
      98.43% cov
      XP_002721476
      98.8% cov
    • Alignment Length
      1,319 aa
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:328751678
      NP_001178061
    • Hit length
      1,337 aa
    • E Value
      0E0
    • BLAST Score
      2,300.8 bits
    • Similarity
      91.72%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001178061
      100% cov
    • Alignment Length
      1,340 aa
Occurrence
192 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
2,292
Type
nucleotide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:3132832
      AF063658
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      4,071 bp
    • E Value
      0E0
    • BLAST Score
      4,233.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF063658
      56.3% cov
    • Alignment Length
      2,292 bp
    • CIGAR string
      2292M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819741
      XM_517284
    • Hit length
      6,058 bp
    • E Value
      0E0
    • BLAST Score
      4,189.3 bits
    • Similarity
      99.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_517284
      37.83% cov
    • Alignment Length
      2,292 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297673570
      XM_002814785
    • Hit length
      6,167 bp
    • E Value
      0E0
    • BLAST Score
      4,095.1 bits
    • Similarity
      98.91%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002814785
      37.17% cov
    • Alignment Length
      2,292 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332238493
      XM_003268386
    • Hit length
      6,155 bp
    • E Value
      0E0
    • BLAST Score
      4,034.2 bits
    • Similarity
      98.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_003268386
      37.24% cov
    • Alignment Length
      2,292 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297292904
      XM_001086814
    • Hit length
      5,871 bp
    • E Value
      0E0
    • BLAST Score
      4,017.6 bits
    • Similarity
      98.3%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_001086814
      39.04% cov
    • Alignment Length
      2,292 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296196522
      XM_002745820
    • Hit length
      6,089 bp
    • E Value
      0E0
    • BLAST Score
      3,735 bits
    • Similarity
      96.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002745820
      37.64% cov
    • Alignment Length
      2,295 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194209153
      XM_001916946
    • Hit length
      4,071 bp
    • E Value
      0E0
    • BLAST Score
      3,114.6 bits
    • Similarity
      91.21%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_001916946
      56.3% cov
    • Alignment Length
      2,297 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:114158631
      NM_001048024
    • Hit length
      4,068 bp
    • E Value
      0E0
    • BLAST Score
      3,033.3 bits
    • Similarity
      90.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NM_001048024
      56.27% cov
    • Alignment Length
      2,298 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301767991
      XM_002919365
    • Hit length
      4,089 bp
    • E Value
      0E0
    • BLAST Score
      3,000.1 bits
    • Similarity
      90.37%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      XM_002919365
      55.98% cov
    • Alignment Length
      2,305 bp
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
764
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:3132833
      AAC16450
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      1,356 aa
    • E Value
      0E0
    • BLAST Score
      1,590.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAC16450
      56.34% cov
    • Alignment Length
      764 aa
    • CIGAR string
      764M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332819742
      XP_517284
    • Hit length
      1,356 aa
    • E Value
      0E0
    • BLAST Score
      1,582 bits
    • Similarity
      99.61%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_517284
      56.34% cov
    • Alignment Length
      764 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297673571
      XP_002814831
    • Hit length
      1,356 aa
    • E Value
      0E0
    • BLAST Score
      1,574.3 bits
    • Similarity
      99.08%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002814831
      56.34% cov
    • Alignment Length
      764 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297292905
      XP_001086814
    • Hit length
      1,361 aa
    • E Value
      0E0
    • BLAST Score
      1,572.4 bits
    • Similarity
      99.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001086814
      56.14% cov
    • Alignment Length
      764 aa
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332238494
      XP_003268434
    • Hit length
      1,356 aa
    • E Value
      0E0
    • BLAST Score
      1,564.3 bits
    • Similarity
      98.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_003268434
      56.34% cov
    • Alignment Length
      764 aa
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296196523
      XP_002745866
    • Hit length
      1,466 aa
    • E Value
      0E0
    • BLAST Score
      1,523.8 bits
    • Similarity
      97.12%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002745866
      52.11% cov
    • Alignment Length
      764 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194209154
      XP_001916981
    • Hit length
      1,356 aa
    • E Value
      0E0
    • BLAST Score
      1,471.8 bits
    • Similarity
      95.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_001916981
      56.34% cov
    • Alignment Length
      764 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:114158632
      NP_001041489
    • Hit length
      1,355 aa
    • E Value
      0E0
    • BLAST Score
      1,460.3 bits
    • Similarity
      95.16%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_001041489
      56.31% cov
    • Alignment Length
      764 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301767992
      XP_002919411
    • Hit length
      1,362 aa
    • E Value
      0E0
    • BLAST Score
      1,435.6 bits
    • Similarity
      93.85%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XP_002919411
      56.02% cov
    • Alignment Length
      764 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335293463
      XP_003129035
    • Hit length
      1,347 aa
    • E Value
      0E0
    • BLAST Score
      1,411.4 bits
    • Similarity
      95.24%
    • Coverage
      96.34%
    • Alignment (schematic)

      SEQ ID NO 4
      96.34% cov
      XP_003129035
      54.64% cov
    • Alignment Length
      736 aa
Occurrence
53 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
4,195
Type
nucleotide
Locations
Detailed Description

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:31433
      X68203
      1 of 9 hits reported for Homo sapiens.
    • Hit length
      4,416 bp
    • E Value
      0E0
    • BLAST Score
      7,747.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      X68203
      95% cov
    • Alignment Length
      4,195 bp
    • CIGAR string
      4195M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332822835
      XM_003310999
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      4,510 bp
    • E Value
      0E0
    • BLAST Score
      7,291.7 bits
    • Similarity
      98.03%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_003310999
      93.13% cov
    • Alignment Length
      4,207 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:189442391
      BC167816
    • Hit length
      4,153 bp
    • E Value
      0E0
    • BLAST Score
      7,184.6 bits
    • Similarity
      99.97%
    • Coverage
      92.8%
    • Alignment (schematic)

      SEQ ID NO 5
      92.8% cov
      BC167816
      93.74% cov
    • Alignment Length
      3,893 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332261100
      XM_003279566
      1 of 5 hits reported for Nomascus leucogenys.
    • Hit length
      4,522 bp
    • E Value
      0E0
    • BLAST Score
      6,948.2 bits
    • Similarity
      96.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      XM_003279566
      93.12% cov
    • Alignment Length
      4,217 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297295920
      XM_001107118
    • Hit length
      4,041 bp
    • E Value
      0E0
    • BLAST Score
      5,783 bits
    • Similarity
      96.54%
    • Coverage
      83.34%
    • Alignment (schematic)

      SEQ ID NO 5
      83.34% cov
      XM_001107118
      86.44% cov
    • Alignment Length
      3,499 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296193399
      XM_002806600
    • Hit length
      4,140 bp
    • E Value
      0E0
    • BLAST Score
      5,400.7 bits
    • Similarity
      92.24%
    • Coverage
      91.44%
    • Alignment (schematic)

      SEQ ID NO 5
      91.44% cov
      XM_002806600
      91.93% cov
    • Alignment Length
      3,853 bp
Occurrence
94 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
1,298
Type
peptide
Locations
Claims, Detailed Description, Summary

Declared organism:
Homo sapiens

Determined organism:
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:388522
      CAA48290
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      1,304 aa
    • E Value
      0E0
    • BLAST Score
      2,696.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CAA48290
      99.54% cov
    • Alignment Length
      1,298 aa
    • CIGAR string
      1298M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296193400
      XP_002806646
    • Hit length
      1,379 aa
    • E Value
      0E0
    • BLAST Score
      2,376.3 bits
    • Similarity
      94.3%
    • Coverage
      98.61%
    • Alignment (schematic)

      SEQ ID NO 6
      98.61% cov
      XP_002806646
      92.1% cov
    • Alignment Length
      1,281 aa
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301784839
      XP_002927834
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      1,427 aa
    • E Value
      0E0
    • BLAST Score
      2,374.4 bits
    • Similarity
      93.67%
    • Coverage
      98.61%
    • Alignment (schematic)

      SEQ ID NO 6
      98.61% cov
      XP_002927834
      89.56% cov
    • Alignment Length
      1,280 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:16758466
      NP_446104
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      1,363 aa
    • E Value
      0E0
    • BLAST Score
      2,369.3 bits
    • Similarity
      92.44%
    • Coverage
      99.92%
    • Alignment (schematic)

      SEQ ID NO 6
      99.92% cov
      NP_446104
      95.16% cov
    • Alignment Length
      1,297 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73970345
      XP_538585
    • Hit length
      1,362 aa
    • E Value
      0E0
    • BLAST Score
      2,360.5 bits
    • Similarity
      93.37%
    • Coverage
      99.92%
    • Alignment (schematic)

      SEQ ID NO 6
      99.92% cov
      XP_538585
      95.15% cov
    • Alignment Length
      1,297 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297295921
      XP_001107118
    • Hit length
      1,335 aa
    • E Value
      0E0
    • BLAST Score
      2,346.6 bits
    • Similarity
      93.01%
    • Coverage
      99%
    • Alignment (schematic)

      SEQ ID NO 6
      99% cov
      XP_001107118
      94.01% cov
    • Alignment Length
      1,288 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:194219486
      XP_001916813
    • Hit length
      1,533 aa
    • E Value
      0E0
    • BLAST Score
      2,334.7 bits
    • Similarity
      92.8%
    • Coverage
      98.23%
    • Alignment (schematic)

      SEQ ID NO 6
      98.23% cov
      XP_001916813
      83.24% cov
    • Alignment Length
      1,278 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:311249531
      XP_003123684
    • Hit length
      1,389 aa
    • E Value
      0E0
    • BLAST Score
      2,327.7 bits
    • Similarity
      93.51%
    • Coverage
      98.38%
    • Alignment (schematic)

      SEQ ID NO 6
      98.38% cov
      XP_003123684
      92.01% cov
    • Alignment Length
      1,279 aa
Occurrence
245 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
1,713
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
570
Type
peptide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
1,416
Type
nucleotide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
15 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
471
Type
peptide
Locations
Detailed Description

Declared organism:
Artificial

Determined organism:
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder

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