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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
51 sequences found in this patent (in total)

Displaying 1 - 10 of 51 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
8,416
Type
nucleotide
Locations
Detailed Description, Summary

Declared organism:
Artificial

Determined organism:
  • HIV whole-genome vector AA1305#18

    HIV whole-genome vector AA1305#18

    • Public DB hit
      GI:261865408
      GQ452298
    • Hit length
      11,487 bp
    • E Value
      0E0
    • BLAST Score
      9,457.8 bits
    • Similarity
      99.96%
    • Coverage
      60.92%
    • Alignment (schematic)

      SEQ ID NO 1
      60.92% cov
      GQ452298
      44.63% cov
    • Alignment Length
      5,127 bp
    • CIGAR string
      310MN2109MN2706M3289H mismatches: 2 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:296556485
      M19921
      1 of 23 hits reported for Human immunodeficiency virus 1.
    • Hit length
      14,825 bp
    • E Value
      0E0
    • BLAST Score
      9,430.1 bits
    • Similarity
      99.86%
    • Coverage
      60.92%
    • Alignment (schematic)

      SEQ ID NO 1
      60.92% cov
      M19921
      34.58% cov
    • Alignment Length
      5,128 bp
    • CIGAR string
      179MD3MI10MN3413MN588M3N928M3289H mismatches: 5 - insertions: 1 - deletions: 1
  • HIV-1 vector pNL4-3

    HIV-1 vector pNL4-3

    • Public DB hit
      GI:296556482
      AF324493
    • Hit length
      14,825 bp
    • E Value
      0E0
    • BLAST Score
      9,430.1 bits
    • Similarity
      99.86%
    • Coverage
      60.92%
    • Alignment (schematic)

      SEQ ID NO 1
      60.92% cov
      AF324493
      34.58% cov
    • Alignment Length
      5,128 bp
    • CIGAR string
      179MD3MI10MN3413MN588M3N928M3289H mismatches: 5 - insertions: 1 - deletions: 1
Occurrence
4 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
86
Type
peptide
Locations
Summary

Declared organism:
Human immunodeficiency virus

Determined organism:
  • HIV-1 vector pNL4-3

    HIV-1 vector pNL4-3

    • Public DB hit
      GI:12831139
      AAK08486
    • Hit length
      86 aa
    • E Value
      1.57E-43
    • BLAST Score
      179.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAK08486
      100% cov
    • Alignment Length
      86 aa
    • CIGAR string
      86M mismatches: 0 - insertions: 0 - deletions: 0
  • HIV-1 M:B_HXB2R

    HIV-1 M:B_HXB2R

    • Public DB hit
      GI:297787734
      3MI9_C
    • Hit length
      86 aa
    • E Value
      4.14E-43
    • BLAST Score
      178.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      3MI9_C
      100% cov
    • Alignment Length
      86 aa
    • CIGAR string
      38MN47M mismatches: 1 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:269986099
      ACZ57352
      1 of 11 hits reported for Human immunodeficiency virus 1.
    • Hit length
      101 aa
    • E Value
      3.26E-40
    • BLAST Score
      168.7 bits
    • Similarity
      94.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      ACZ57352
      85.15% cov
    • Alignment Length
      86 aa
    • CIGAR string
      39MNMN14MN3MN15MN4MN4M mismatches: 6 - insertions: 0 - deletions: 0
  • Simian-Human immunodeficiency virus

    Simian-Human immunodeficiency virus

    • Public DB hit
      GI:2828053
      AAB99973
      1 of 3 hits reported for Simian-Human immunodeficiency virus.
    • Hit length
      86 aa
    • E Value
      1.88E-36
    • BLAST Score
      156.4 bits
    • Similarity
      98.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      AAB99973
      100% cov
    • Alignment Length
      86 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:195549538
      ACG49997
      1 of 5 hits reported for synthetic construct.
    • Hit length
      94 aa
    • E Value
      1.49E-35
    • BLAST Score
      153.3 bits
    • Similarity
      97.62%
    • Coverage
      97.67%
    • Alignment (schematic)

      SEQ ID NO 2
      97.67% cov
      ACG49997
      89.36% cov
    • Alignment Length
      84 aa
  • Human immunodeficiency virus type 1 (CLONE 12)

    Human immunodeficiency virus type 1 (CLONE 12)

    • Public DB hit
      GI:135330
      P04326
    • Hit length
      86 aa
    • E Value
      2.67E-35
    • BLAST Score
      152.5 bits
    • Similarity
      96.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P04326
      100% cov
    • Alignment Length
      86 aa
  • Human immunodeficiency virus type 1 (CDC-451 ISOLATE)

    Human immunodeficiency virus type 1 (CDC-451 ISOLATE)

    • Public DB hit
      GI:135337
      P05907
    • Hit length
      101 aa
    • E Value
      2.74E-35
    • BLAST Score
      152.5 bits
    • Similarity
      96.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P05907
      85.15% cov
    • Alignment Length
      86 aa
Occurrence
25 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
116
Type
peptide
Locations
Summary

Declared organism:
Human immunodeficiency virus

Determined organism:
  • HIV-1 vector pNL4-3

    HIV-1 vector pNL4-3

    • Public DB hit
      GI:12831140
      AAK08487
    • Hit length
      116 aa
    • E Value
      3.81E-75
    • BLAST Score
      229.6 bits
    • Similarity
      99.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAK08487
      100% cov
    • Alignment Length
      116 aa
    • CIGAR string
      108MN4MN2M mismatches: 2 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:3378127
      AAC28450
      1 of 16 hits reported for Human immunodeficiency virus 1.
    • Hit length
      116 aa
    • E Value
      2.33E-74
    • BLAST Score
      227.3 bits
    • Similarity
      98.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAC28450
      100% cov
    • Alignment Length
      116 aa
    • CIGAR string
      105MN7MN2M mismatches: 2 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus type 1 (CLONE 12)

    Human immunodeficiency virus type 1 (CLONE 12)

    • Public DB hit
      GI:132414
      P04325
    • Hit length
      116 aa
    • E Value
      1.06E-59
    • BLAST Score
      190.3 bits
    • Similarity
      98.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      P04325
      100% cov
    • Alignment Length
      116 aa
    • CIGAR string
      12M3N5MN95M mismatches: 4 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus type 1 (HXB3 ISOLATE)

    Human immunodeficiency virus type 1 (HXB3 ISOLATE)

    • Public DB hit
      GI:62288904
      P69718
    • Hit length
      116 aa
    • E Value
      2.85E-59
    • BLAST Score
      189.1 bits
    • Similarity
      98.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      P69718
      100% cov
    • Alignment Length
      116 aa
  • Human immunodeficiency virus type 1 BH10

    Human immunodeficiency virus type 1 BH10

    • Public DB hit
      GI:132413
      P04616
      1 of 2 hits reported for Human immunodeficiency virus type 1 BH10.
    • Hit length
      116 aa
    • E Value
      4.65E-59
    • BLAST Score
      188.3 bits
    • Similarity
      98.28%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      P04616
      100% cov
    • Alignment Length
      116 aa
  • Simian-Human immunodeficiency virus

    Simian-Human immunodeficiency virus

    • Public DB hit
      GI:54111977
      AAV28701
    • Hit length
      116 aa
    • E Value
      6.24E-59
    • BLAST Score
      188.3 bits
    • Similarity
      97.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AAV28701
      100% cov
    • Alignment Length
      116 aa
  • Human immunodeficiency virus type 1 (BRU ISOLATE)

    Human immunodeficiency virus type 1 (BRU ISOLATE)

    • Public DB hit
      GI:132420
      P04620
    • Hit length
      116 aa
    • E Value
      2.43E-58
    • BLAST Score
      186.8 bits
    • Similarity
      97.41%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      P04620
      100% cov
    • Alignment Length
      116 aa
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:321268189
      ADW78898
    • Hit length
      116 aa
    • E Value
      9.52E-57
    • BLAST Score
      182.6 bits
    • Similarity
      96.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ADW78898
      100% cov
    • Alignment Length
      116 aa
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
500
Type
peptide
Locations
Claims, Summary

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)

    Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)

    • Public DB hit
      GI:120839
      P12493
    • Hit length
      500 aa
    • E Value
      0E0
    • BLAST Score
      1,043.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      P12493
      100% cov
    • Alignment Length
      500 aa
    • CIGAR string
      500M mismatches: 0 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:902799
      AAB60571
      1 of 8 hits reported for Human immunodeficiency virus 1.
    • Hit length
      500 aa
    • E Value
      0E0
    • BLAST Score
      1,042.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAB60571
      100% cov
    • Alignment Length
      500 aa
    • CIGAR string
      474MN25M mismatches: 1 - insertions: 0 - deletions: 0
  • HIV-1 M:B 2003_KC005

    HIV-1 M:B 2003_KC005

    • Public DB hit
      GI:269993116
      CBI61184
      1 of 15 hits reported for HIV-1 M:B 2003_KC005.
    • Hit length
      497 aa
    • E Value
      0E0
    • BLAST Score
      1,038.5 bits
    • Similarity
      100%
    • Coverage
      99.4%
    • Alignment (schematic)

      SEQ ID NO 4
      99.4% cov
      CBI61184
      100% cov
    • Alignment Length
      497 aa
  • HIV-1 M:B 2007_HIV_010

    HIV-1 M:B 2007_HIV_010

    • Public DB hit
      GI:270381502
      CBI68332
    • Hit length
      497 aa
    • E Value
      0E0
    • BLAST Score
      1,036.6 bits
    • Similarity
      99.8%
    • Coverage
      99.4%
    • Alignment (schematic)

      SEQ ID NO 4
      99.4% cov
      CBI68332
      100% cov
    • Alignment Length
      497 aa
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
1,435
Type
peptide
Locations
Summary

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)

    Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)

    • Public DB hit
      GI:341942259
      P12497
    • Hit length
      1,435 aa
    • E Value
      0E0
    • BLAST Score
      2,968.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P12497
      100% cov
    • Alignment Length
      1,435 aa
    • CIGAR string
      1435M mismatches: 0 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:3002831
      AAD03191
      1 of 11 hits reported for Human immunodeficiency virus 1.
    • Hit length
      1,435 aa
    • E Value
      0E0
    • BLAST Score
      2,887.8 bits
    • Similarity
      98.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      AAD03191
      100% cov
    • Alignment Length
      1,435 aa
    • CIGAR string
      14MN14MN38MN5M2N5MNMN6MNMN8MN20MNMN126MN120MN4MNMN22MN2MN4MN20MNMN6MN4M2N12MN60MN167MN20MN38MN14MN29MN64MN4MN19MN60MN17MN13MN9MN34MN24MN89MN121M2N37MN41MNMN38MN48MN5M mismatches: 48 - insertions: 0 - deletions: 0
  • Human immunodeficiency virus type 1 (BRU ISOLATE)

    Human immunodeficiency virus type 1 (BRU ISOLATE)

    • Public DB hit
      GI:77416878
      P03367
    • Hit length
      1,447 aa
    • E Value
      0E0
    • BLAST Score
      2,875.9 bits
    • Similarity
      98.27%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P03367
      100% cov
    • Alignment Length
      1,447 aa
    • CIGAR string
      14MN12MN53MNMN8M2N29M2N12MN76MN36MN87MN32MN4MNMN8MN13MN37MN18M12I27MN37MN163MN19MN39MN51MN57MN20MN63M2N17MN23MN34MN11MN12MN7MN50MN30MN19MN102MN37MN82MN54M mismatches: 40 - insertions: 12 - deletions: 0
  • Human immunodeficiency virus type 1 (isolate YU2)

    Human immunodeficiency virus type 1 (isolate YU2)

    • Public DB hit
      GI:77416892
      P35963
    • Hit length
      1,435 aa
    • E Value
      0E0
    • BLAST Score
      2,873.6 bits
    • Similarity
      98.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P35963
      100% cov
    • Alignment Length
      1,435 aa
  • Human immunodeficiency virus type 1 lw12.3 isolate

    Human immunodeficiency virus type 1 lw12.3 isolate

    • Public DB hit
      GI:172044539
      P0C6F2
    • Hit length
      1,435 aa
    • E Value
      0E0
    • BLAST Score
      2,868.6 bits
    • Similarity
      98.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P0C6F2
      100% cov
    • Alignment Length
      1,435 aa
  • Human immunodeficiency virus type 1 (JRCSF ISOLATE)

    Human immunodeficiency virus type 1 (JRCSF ISOLATE)

    • Public DB hit
      GI:77416883
      P20875
    • Hit length
      1,439 aa
    • E Value
      0E0
    • BLAST Score
      2,868.6 bits
    • Similarity
      98.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P20875
      100% cov
    • Alignment Length
      1,439 aa
  • Human immunodeficiency virus type 1 BH10

    Human immunodeficiency virus type 1 BH10

    • Public DB hit
      GI:77416876
      P03366
    • Hit length
      1,447 aa
    • E Value
      0E0
    • BLAST Score
      2,866.6 bits
    • Similarity
      98.2%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P03366
      100% cov
    • Alignment Length
      1,447 aa
  • HIV-1 M:B_89.6

    HIV-1 M:B_89.6

    • Public DB hit
      GI:115502561
      Q73368
    • Hit length
      1,435 aa
    • E Value
      0E0
    • BLAST Score
      2,865.1 bits
    • Similarity
      98.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      Q73368
      100% cov
    • Alignment Length
      1,435 aa
  • Human immunodeficiency virus type 1 (BH5 ISOLATE)

    Human immunodeficiency virus type 1 (BH5 ISOLATE)

    • Public DB hit
      GI:77416877
      P04587
    • Hit length
      1,447 aa
    • E Value
      0E0
    • BLAST Score
      2,862.8 bits
    • Similarity
      98%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P04587
      100% cov
    • Alignment Length
      1,447 aa
  • Human immunodeficiency virus type 1 (OYI ISOLATE)

    Human immunodeficiency virus type 1 (OYI ISOLATE)

    • Public DB hit
      GI:77416888
      P20892
    • Hit length
      1,434 aa
    • E Value
      0E0
    • BLAST Score
      2,862.8 bits
    • Similarity
      98.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P20892
      100% cov
    • Alignment Length
      1,435 aa
  • Human immunodeficiency virus type 1 (RF/HAT ISOLATE)

    Human immunodeficiency virus type 1 (RF/HAT ISOLATE)

    • Public DB hit
      GI:77416890
      P05959
    • Hit length
      1,436 aa
    • E Value
      0E0
    • BLAST Score
      2,857.4 bits
    • Similarity
      98.05%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P05959
      100% cov
    • Alignment Length
      1,437 aa
  • HIV-1 M:B_ARV2/SF2

    HIV-1 M:B_ARV2/SF2

    • Public DB hit
      GI:77416875
      P03369
    • Hit length
      1,437 aa
    • E Value
      0E0
    • BLAST Score
      2,851.6 bits
    • Similarity
      98.82%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P03369
      100% cov
    • Alignment Length
      1,437 aa
  • HIV-1 M:B_MN

    HIV-1 M:B_MN

    • Public DB hit
      GI:77416885
      P05961
    • Hit length
      1,441 aa
    • E Value
      0E0
    • BLAST Score
      2,813.9 bits
    • Similarity
      97.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P05961
      100% cov
    • Alignment Length
      1,442 aa
  • Human immunodeficiency virus type 1 (NDK ISOLATE)

    Human immunodeficiency virus type 1 (NDK ISOLATE)

    • Public DB hit
      GI:77416887
      P18802
    • Hit length
      1,432 aa
    • E Value
      0E0
    • BLAST Score
      2,791.5 bits
    • Similarity
      97.35%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P18802
      100% cov
    • Alignment Length
      1,436 aa
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
261
Type
nucleotide
Locations
Undetermined

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:328453
      M11840
      1 of 24 hits reported for Human immunodeficiency virus 1.
    • Hit length
      2,304 bp
    • E Value
      1.82E-122
    • BLAST Score
      449.9 bits
    • Similarity
      97.71%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      M11840
      11.33% cov
    • Alignment Length
      262 bp
    • CIGAR string
      116MN58MN3MIMND17MN61M mismatches: 4 - insertions: 1 - deletions: 1
  • Human T-lymphotropic virus 3

    Human T-lymphotropic virus 3

    • Public DB hit
      GI:328764
      M14310
    • Hit length
      261 bp
    • E Value
      8.48E-121
    • BLAST Score
      444.3 bits
    • Similarity
      97.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      M14310
      100% cov
    • Alignment Length
      262 bp
    • CIGAR string
      116MN54MN3MN3MIMND17MN61M mismatches: 5 - insertions: 1 - deletions: 1
Occurrence
12 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
351
Type
nucleotide
Locations
Undetermined

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:328453
      M11840
      1 of 25 hits reported for Human immunodeficiency virus 1.
    • Hit length
      2,304 bp
    • E Value
      5.09E-174
    • BLAST Score
      621.6 bits
    • Similarity
      98.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      M11840
      15.23% cov
    • Alignment Length
      352 bp
    • CIGAR string
      36MN2MI2MDN17MN290M mismatches: 3 - insertions: 1 - deletions: 1
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
1,503
Type
nucleotide
Locations
Undetermined

Declared organism:
Human immunodeficiency virus

Determined organism:
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:296556485
      M19921
      1 of 6 hits reported for Human immunodeficiency virus 1.
    • Hit length
      14,825 bp
    • E Value
      0E0
    • BLAST Score
      2,776.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      M19921
      10.14% cov
    • Alignment Length
      1,503 bp
    • CIGAR string
      1503M mismatches: 0 - insertions: 0 - deletions: 0
  • HIV-1 vector pNL4-3

    HIV-1 vector pNL4-3

    • Public DB hit
      GI:296556482
      AF324493
    • Hit length
      14,825 bp
    • E Value
      0E0
    • BLAST Score
      2,776.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      AF324493
      10.14% cov
    • Alignment Length
      1,503 bp
    • CIGAR string
      1503M mismatches: 0 - insertions: 0 - deletions: 0
  • HIV whole-genome vector AA1305#18

    HIV whole-genome vector AA1305#18

    • Public DB hit
      GI:261865408
      GQ452298
    • Hit length
      11,487 bp
    • E Value
      0E0
    • BLAST Score
      2,776.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GQ452298
      13.08% cov
    • Alignment Length
      1,503 bp
    • CIGAR string
      1503M mismatches: 0 - insertions: 0 - deletions: 0
  • HIV-1 M:B 2007_HIV_010

    HIV-1 M:B 2007_HIV_010

    • Public DB hit
      GI:270381514
      FN599033
      1 of 9 hits reported for HIV-1 M:B 2007_HIV_010.
    • Hit length
      1,490 bp
    • E Value
      0E0
    • BLAST Score
      2,752.6 bits
    • Similarity
      100%
    • Coverage
      99.14%
    • Alignment (schematic)

      SEQ ID NO 8
      99.14% cov
      FN599033
      100% cov
    • Alignment Length
      1,490 bp
  • HIV-1 M:B 2007_HIV-032

    HIV-1 M:B 2007_HIV-032

    • Public DB hit
      GI:270285988
      FN599547
      1 of 8 hits reported for HIV-1 M:B 2007_HIV-032.
    • Hit length
      1,490 bp
    • E Value
      0E0
    • BLAST Score
      2,752.6 bits
    • Similarity
      100%
    • Coverage
      99.14%
    • Alignment (schematic)

      SEQ ID NO 8
      99.14% cov
      FN599547
      100% cov
    • Alignment Length
      1,490 bp
Occurrence
25 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
4,308
Type
nucleotide
Locations
Undetermined

Declared organism:
Human immunodeficiency virus

Determined organism:
  • HIV whole-genome vector AA1305#18

    HIV whole-genome vector AA1305#18

    • Public DB hit
      GI:261865408
      GQ452298
    • Hit length
      11,487 bp
    • E Value
      0E0
    • BLAST Score
      7,943.6 bits
    • Similarity
      99.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      GQ452298
      37.49% cov
    • Alignment Length
      4,308 bp
    • CIGAR string
      1301MD330MN2675M mismatches: 1 - insertions: 0 - deletions: 1
  • Human immunodeficiency virus 1

    Human immunodeficiency virus 1

    • Public DB hit
      GI:391379409
      JQ403040
      1 of 23 hits reported for Human immunodeficiency virus 1.
    • Hit length
      8,733 bp
    • E Value
      0E0
    • BLAST Score
      7,926.9 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      JQ403040
      49.32% cov
    • Alignment Length
      4,308 bp
    • CIGAR string
      1301MD1517MN588M3N897M mismatches: 4 - insertions: 0 - deletions: 1
  • HIV-1 vector pNL4-3

    HIV-1 vector pNL4-3

    • Public DB hit
      GI:296556482
      AF324493
    • Hit length
      14,825 bp
    • E Value
      0E0
    • BLAST Score
      7,926.9 bits
    • Similarity
      99.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF324493
      29.05% cov
    • Alignment Length
      4,308 bp
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
663
Type
nucleotide
Locations
Claims, Summary

Declared organism:
Artificial

Determined organism:
Occurrence
3 times in PatSeqDB
Tools
PatSeq Finder

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