Polyomavirus Diagnostic Reagents

  • Published: Feb 16, 2010
  • Earliest Priority: Jul 22 2005
  • Family: 4
  • Cited Works: 23
  • Cited by: 3
  • Cites: 3
  • Sequences: 14
  • Additional Info: Cited Works Full text
Data obtained from: USPTO Fulltext EMBL-EBI Pat NCBI GenBank
14 sequences found in this patent (in total)

Filter sequences

Clear
Download sequences in fasta format: 14 peptides

Displaying 1 - 10 of 14 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
9
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Polyomavirus hominis 1
Determined organism
  • BK polyomavirus

    BK polyomavirus

    • Public DB hit
      GI:119926817
      BAF42979
      1 of 25 hits reported for BK polyomavirus.
    • Hit length
      362 aa
    • E Value
      1.01E1
    • BLAST Score
      32.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      BAF42979
      2.49% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
74 times in PatSeqDB
Tools
SEQ ID NO
2
Length
10
Sequence Type
peptide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Polyomavirus hominis 1
Determined organism
  • BK polyomavirus

    BK polyomavirus

    • Public DB hit
      GI:312004162
      CBX88302
      1 of 25 hits reported for BK polyomavirus.
    • Hit length
      362 aa
    • E Value
      1.42E0
    • BLAST Score
      35.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      CBX88302
      2.76% cov
    • Alignment Length
      10 aa
    • CIGAR string
      10M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
38 times in PatSeqDB
Tools
SEQ ID NO
3
Length
9
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Polyomavirus hominis 2
Determined organism
  • JC polyomavirus

    JC polyomavirus

    • Public DB hit
      GI:285206691
      ADC35117
      1 of 25 hits reported for JC polyomavirus.
    • Hit length
      123 aa
    • E Value
      4.37E0
    • BLAST Score
      34.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ADC35117
      7.32% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
12 times in PatSeqDB
Tools
SEQ ID NO
4
Length
9
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Simian virus 40
Determined organism
  • Simian virus 40

    Simian virus 40

    • Public DB hit
      GI:555401
      AAB59797
      1 of 14 hits reported for Simian virus 40.
    • Hit length
      223 aa
    • E Value
      5.25E0
    • BLAST Score
      33.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      AAB59797
      4.04% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
  • Simian virus 12

    Simian virus 12

    • Public DB hit
      GI:224460774
      YP_002635566
      1 of 2 hits reported for Simian virus 12.
    • Hit length
      362 aa
    • E Value
      6.79E0
    • BLAST Score
      33.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002635566
      2.49% cov
    • Alignment Length
      9 aa
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
5
Length
9
Sequence Type
peptide
Locations
Claims, Detailed Description, Summary
Declared organism
Polyomavirus hominis 1
Determined organism
  • BK polyomavirus

    BK polyomavirus

    • Public DB hit
      GI:113204634
      YP_717939
      1 of 25 hits reported for BK polyomavirus.
    • Hit length
      362 aa
    • E Value
      9.81E0
    • BLAST Score
      32.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      YP_717939
      2.49% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
34 times in PatSeqDB
Tools
SEQ ID NO
6
Length
9
Sequence Type
peptide
Locations
Detailed Description, Summary
Declared organism
Polyomavirus hominis 2
Determined organism
  • Simian virus 12

    Simian virus 12

    • Public DB hit
      GI:82524376
      YP_406554
      1 of 2 hits reported for Simian virus 12.
    • Hit length
      364 aa
    • E Value
      8.71E0
    • BLAST Score
      32.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_406554
      2.47% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
  • JC polyomavirus

    JC polyomavirus

    • Public DB hit
      GI:330424421
      AEC14795
      1 of 23 hits reported for JC polyomavirus.
    • Hit length
      354 aa
    • E Value
      9.28E0
    • BLAST Score
      32.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AEC14795
      2.54% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
63 times in PatSeqDB
Tools
SEQ ID NO
7
Length
9
Sequence Type
peptide
Locations
Detailed Description
Declared organism
Simian virus 40
Determined organism
  • Simian virus 40

    Simian virus 40

    • Public DB hit
      GI:297591902
      YP_003708381
      1 of 15 hits reported for Simian virus 40.
    • Hit length
      364 aa
    • E Value
      7.65E0
    • BLAST Score
      33.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      YP_003708381
      2.47% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
8
Length
10
Sequence Type
peptide
Locations
Drawings
Declared organism
Polyomavirus hominis 1
Determined organism
  • BK polyomavirus

    BK polyomavirus

    • Public DB hit
      GI:154800128
      BAF75138
      1 of 24 hits reported for BK polyomavirus.
    • Hit length
      362 aa
    • E Value
      8.12E0
    • BLAST Score
      33.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      BAF75138
      2.76% cov
    • Alignment Length
      10 aa
    • CIGAR string
      10M mismatches: 0 - insertions: 0 - deletions: 0
  • BK virus strain AS

    BK virus strain AS

    • Public DB hit
      GI:116622
      P14996
    • Hit length
      362 aa
    • E Value
      8.9E0
    • BLAST Score
      33.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      P14996
      2.76% cov
    • Alignment Length
      10 aa
Occurrence
28 times in PatSeqDB
Tools
SEQ ID NO
9
Length
9
Sequence Type
peptide
Locations
Drawings
Declared organism
Polyomavirus hominis 1
Determined organism
  • BK polyomavirus

    BK polyomavirus

    • Public DB hit
      GI:154800128
      BAF75138
      1 of 24 hits reported for BK polyomavirus.
    • Hit length
      362 aa
    • E Value
      6.63E1
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      BAF75138
      2.49% cov
    • Alignment Length
      9 aa
    • CIGAR string
      9M mismatches: 0 - insertions: 0 - deletions: 0
  • BK virus strain AS

    BK virus strain AS

    • Public DB hit
      GI:116622
      P14996
    • Hit length
      362 aa
    • E Value
      7.2E1
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      P14996
      2.49% cov
    • Alignment Length
      9 aa
Occurrence
47 times in PatSeqDB
Tools
SEQ ID NO
10
Length
10
Sequence Type
peptide
Locations
Drawings
Declared organism
Polyomavirus hominis 1
Determined organism
  • BK polyomavirus

    BK polyomavirus

    • Public DB hit
      GI:154800128
      BAF75138
      1 of 24 hits reported for BK polyomavirus.
    • Hit length
      362 aa
    • E Value
      1.05E1
    • BLAST Score
      32.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      BAF75138
      2.76% cov
    • Alignment Length
      10 aa
    • CIGAR string
      10M mismatches: 0 - insertions: 0 - deletions: 0
  • BK virus strain AS

    BK virus strain AS

    • Public DB hit
      GI:116622
      P14996
    • Hit length
      362 aa
    • E Value
      1.07E1
    • BLAST Score
      32.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      P14996
      2.76% cov
    • Alignment Length
      10 aa
    • CIGAR string
      10M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
30 times in PatSeqDB
Tools

Feedback