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Search for Biological Sequences disclosed in Patents

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Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat
77 sequences found in this patent (in total)

Displaying 1 - 10 of 77 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
327
Type
nucleotide
Locations
Undetermined

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002729
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP012030
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      FN649414
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001846
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001368
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001396
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
      1 of 7 hits reported for Escherichia coli.
    • Hit length
      1,011 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EU899504
      32.34% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP001164
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000948
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP000946
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP009048
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:48994873
      U00096
    • Hit length
      4,639,675 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      U00096
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. Sakai

    Escherichia coli O157:H7 str. Sakai

    • Public DB hit
      GI:47118301
      BA000007
    • Hit length
      5,498,450 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      BA000007
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:56384585
      AE005174
    • Hit length
      5,528,445 bp
    • E Value
      9.14E-170
    • BLAST Score
      605 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AE005174
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      327M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      4.25E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002516
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      77MN249M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      4.25E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      CP002185
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      77MN249M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      4.25E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AP010958
      0.01% cov
    • Alignment Length
      327 bp
    • CIGAR string
      77MN249M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli O111:H-

    Escherichia coli O111:H-

    • Public DB hit
      GI:195182911
      AB426054
    • Hit length
      25,898 bp
    • E Value
      4.25E-168
    • BLAST Score
      599.4 bits
    • Similarity
      99.69%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AB426054
      1.26% cov
    • Alignment Length
      327 bp
    • CIGAR string
      77MN249M mismatches: 1 - insertions: 0 - deletions: 0
Occurrence
60 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
44
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
44
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP002797
      0% cov
    • Alignment Length
      28 bp
    • CIGAR string
      16H28M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP002729
      0% cov
    • Alignment Length
      28 bp
    • CIGAR string
      16H28M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP002516
      0% cov
    • Alignment Length
      28 bp
    • CIGAR string
      16H28M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      AP012030
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP002185
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      AM946981
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001855
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      FN649414
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP002167
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001671
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001969
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001846
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      FN554766
      0% cov
    • Alignment Length
      28 bp
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001383
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      AP009378
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      AP010960
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      AP010958
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      AP010953
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001368
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP000819
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001665
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      CP001396
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
    • Hit length
      1,011 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 3
      63.64% cov
      EU899504
      2.77% cov
    • Alignment Length
      28 bp
Occurrence
124 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
54
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
44
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP002797
      0% cov
    • Alignment Length
      28 bp
    • CIGAR string
      16H28M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP002729
      0% cov
    • Alignment Length
      28 bp
    • CIGAR string
      16H28M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP002516
      0% cov
    • Alignment Length
      28 bp
    • CIGAR string
      16H28M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      AP012030
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP002185
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      AM946981
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001855
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      FN649414
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP002167
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001671
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001969
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001846
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      FN554766
      0% cov
    • Alignment Length
      28 bp
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001383
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      AP009378
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      AP010960
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      AP010958
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      AP010953
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001368
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP000819
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001665
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      CP001396
      0% cov
    • Alignment Length
      28 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
    • Hit length
      1,011 bp
    • E Value
      1.35E-5
    • BLAST Score
      56 bits
    • Similarity
      100%
    • Coverage
      63.64%
    • Alignment (schematic)

      SEQ ID NO 5
      63.64% cov
      EU899504
      2.77% cov
    • Alignment Length
      28 bp
Occurrence
124 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
46
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP002797
      0% cov
    • Alignment Length
      36 bp
    • CIGAR string
      10H36M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP002729
      0% cov
    • Alignment Length
      36 bp
    • CIGAR string
      10H36M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      AP012030
      0% cov
    • Alignment Length
      36 bp
    • CIGAR string
      10H36M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      AM946981
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP001855
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      FN649414
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP002167
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP001671
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP001969
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP001846
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      FN554766
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      AP009378
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      AP010960
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      AP010953
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP001368
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP000819
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP001665
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      CP001396
      0% cov
    • Alignment Length
      36 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,011 bp
    • E Value
      2.47E-10
    • BLAST Score
      71.9 bits
    • Similarity
      100%
    • Coverage
      78.26%
    • Alignment (schematic)

      SEQ ID NO 6
      78.26% cov
      EU899504
      3.56% cov
    • Alignment Length
      36 bp
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
45
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP002797
      0% cov
    • Alignment Length
      34 bp
    • CIGAR string
      11H34M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP002729
      0% cov
    • Alignment Length
      34 bp
    • CIGAR string
      11H34M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      AP012030
      0% cov
    • Alignment Length
      34 bp
    • CIGAR string
      11H34M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      AM946981
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP001855
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      FN649414
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP002167
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP001671
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP001969
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP001846
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      FN554766
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      AP009378
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      AP010960
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      AP010953
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP001368
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP000819
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP001665
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      CP001396
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,011 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 7
      75.56% cov
      EU899504
      3.36% cov
    • Alignment Length
      34 bp
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
45
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP002729
      0% cov
    • Alignment Length
      34 bp
    • CIGAR string
      11H34M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP002516
      0% cov
    • Alignment Length
      34 bp
    • CIGAR string
      11H34M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      AP012030
      0% cov
    • Alignment Length
      34 bp
    • CIGAR string
      11H34M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP002185
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      FN649414
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP001846
      0% cov
    • Alignment Length
      34 bp
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP001383
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      AP010958
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP001368
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP001396
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,011 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      EU899504
      3.36% cov
    • Alignment Length
      34 bp
  • Escherichia coli IAI39

    Escherichia coli IAI39

    • Public DB hit
      GI:218368405
      CU928164
    • Hit length
      5,132,068 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CU928164
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP001164
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli O111:H-

    Escherichia coli O111:H-

    • Public DB hit
      GI:195182911
      AB426054
    • Hit length
      25,898 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      AB426054
      0.13% cov
    • Alignment Length
      34 bp
  • Shigella boydii CDC 3083-94

    Shigella boydii CDC 3083-94

    • Public DB hit
      GI:187427012
      CP001063
    • Hit length
      4,615,997 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP001063
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli str. K-12 substr. DH10B

    Escherichia coli str. K-12 substr. DH10B

    • Public DB hit
      GI:169887498
      CP000948
    • Hit length
      4,686,137 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP000948
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli ATCC 8739

    Escherichia coli ATCC 8739

    • Public DB hit
      GI:169752989
      CP000946
    • Hit length
      4,746,218 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP000946
      0% cov
    • Alignment Length
      34 bp
  • Shigella flexneri 5 str. 8401

    Shigella flexneri 5 str. 8401

    • Public DB hit
      GI:110613622
      CP000266
    • Hit length
      4,574,284 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      CP000266
      0% cov
    • Alignment Length
      34 bp
  • Shigella flexneri 2a str. 301

    Shigella flexneri 2a str. 301

    • Public DB hit
      GI:24080789
      AE005674
    • Hit length
      4,607,203 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      AE005674
      0% cov
    • Alignment Length
      34 bp
  • Escherichia coli str. K-12 substr. W3110

    Escherichia coli str. K-12 substr. W3110

    • Public DB hit
      GI:85674274
      AP009048
    • Hit length
      4,646,332 bp
    • E Value
      3.71E-9
    • BLAST Score
      67.9 bits
    • Similarity
      100%
    • Coverage
      75.56%
    • Alignment (schematic)

      SEQ ID NO 8
      75.56% cov
      AP009048
      0% cov
    • Alignment Length
      34 bp
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
45
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP002797
      0% cov
    • Alignment Length
      33 bp
    • CIGAR string
      12H33M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP002729
      0% cov
    • Alignment Length
      33 bp
    • CIGAR string
      12H33M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP002516
      0% cov
    • Alignment Length
      33 bp
    • CIGAR string
      12H33M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      AP012030
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP002185
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      AM946981
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      FN649414
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP002167
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP001671
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP001969
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP001846
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      FN554766
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      AP009378
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      AP010960
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      AP010958
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      AP010953
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP001368
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP000819
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP001665
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      CP001396
      0% cov
    • Alignment Length
      33 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
      1 of 3 hits reported for Escherichia coli.
    • Hit length
      1,011 bp
    • E Value
      1.46E-8
    • BLAST Score
      65.9 bits
    • Similarity
      100%
    • Coverage
      73.33%
    • Alignment (schematic)

      SEQ ID NO 9
      73.33% cov
      EU899504
      3.26% cov
    • Alignment Length
      33 bp
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
18
Type
nucleotide
Locations
Undetermined

Declared organism:
Artificial

Determined organism:
  • Escherichia coli NA114

    Escherichia coli NA114

    • Public DB hit
      GI:333968017
      CP002797
    • Hit length
      4,935,241 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP002797
      0% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP002729
      0% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli KO11FL

    Escherichia coli KO11FL

    • Public DB hit
      GI:323376397
      CP002516
    • Hit length
      4,920,168 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP002516
      0% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP012030
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli W

    Escherichia coli W

    • Public DB hit
      GI:315059226
      CP002185
    • Hit length
      4,900,968 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP002185
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli BL21(DE3)

    Escherichia coli BL21(DE3)

    • Public DB hit
      GI:313848522
      AM946981
      1 of 2 hits reported for Escherichia coli BL21(DE3).
    • Hit length
      4,558,947 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AM946981
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli O83:H1 str. NRG 857C

    Escherichia coli O83:H1 str. NRG 857C

    • Public DB hit
      GI:312944605
      CP001855
    • Hit length
      4,747,819 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001855
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      FN649414
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP002167
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001671
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001969
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001846
      0% cov
    • Alignment Length
      18 bp
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001383
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli SE15

    Escherichia coli SE15

    • Public DB hit
      GI:281177210
      AP009378
    • Hit length
      4,717,338 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP009378
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:257762509
      AP010960
    • Hit length
      5,371,077 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP010960
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP010958
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP010953
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001368
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli B str. REL606

    Escherichia coli B str. REL606

    • Public DB hit
      GI:253972022
      CP000819
    • Hit length
      4,629,812 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000819
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    Escherichia coli 'BL21-Gold(DE3)pLysS AG'

    • Public DB hit
      GI:253322479
      CP001665
    • Hit length
      4,570,938 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001665
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli BW2952

    Escherichia coli BW2952

    • Public DB hit
      GI:238859724
      CP001396
    • Hit length
      4,578,159 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP001396
      0% cov
    • Alignment Length
      18 bp
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209767485
      EU899504
      1 of 2 hits reported for Escherichia coli.
    • Hit length
      1,011 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU899504
      1.78% cov
    • Alignment Length
      18 bp
Occurrence
47 times in PatSeqDB
Tools
PatSeq Finder

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