Patents
US 2006/0217338 A1

Influenza Nucleic Acids, Polypeptides, And Uses Thereof

  • Published: Sep 28, 2006
  • Earliest Priority: Feb 24 2005
  • Family: 9
  • Cited Works: 0
  • Cited by: 39
  • Cites: 2
  • Sequences: 9
  • Additional Info: Full text
Patent Application
US 2006/0217338 A1
028-659-596-888-778
Data obtained from: USPTO Fulltext
9 sequences found in this patent (in total)

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Download sequences in fasta format: 3 peptides 6 nucleotides

Displaying 9 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,698
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:111146845
      DQ868374
      1 of 3 hits reported for synthetic construct.
    • Hit length
      1,701 bp
    • E Value
      0E0
    • BLAST Score
      1,384.3 bits
    • Similarity
      81.84%
    • Coverage
      99.88%
    • Alignment (schematic)

      SEQ ID NO 1
      99.88% cov
      DQ868374
      99.82% cov
    • Alignment Length
      1,740 bp
    • CIGAR string
      2H3MD3MD2MI7M2N8M2N4M2N7M2NMN2MN2MN2MN5MN2MN17MN8MN11MN14MN5MN9MDNMI5MN11MN8MN12M2N9MN2MN5MN14MN4M3NMN9MNMN5MN2MN2MN5MN2MN6M2D2MDNMI2MIN2MI6MDNMI2MN12M2N3M3N15MN5MN3MN5M2N3MN12MNMN2MN6MDNMI6M2N10MI2MD14MN2MD2MI12MN2M2DN2MD2MN3M2IM2N2MN3MNMN4MNMIMNMD2NMIN3M2I2MD2M2I3M2N3MN8MN13MDM2DN5MN3M2IMNMI5MN2MN3MDNMI3M2N13MD3MNMI2MN20MN11MN3MD3M2D2M2I2MIMN4MIMNMD9MNM2NMINMDMN9MDNMI4MDMI6MNMN4MN15MN2MN2MN3M3N22M2N8MN2MN20MN2MN5M2N6MDMI2MN7MN3MN2MN5MN5MN5MN5MN7M2N6MD2MI3MDNMI8MNMD2MNMIN7M2N2MN4MN2M2NM2N16MN2MN8MN2MN20M2NMN5MN11MN5MN2MN5MN3MN5MN4MN3MNMN4M2N9MNMN2MN5MN5MN11MN5MN2MN14MN2MN5MN2MN8MN3MNMN2MN8MN5MN11MN14MN2MN15MDNMI2MN12MN10MN5MN35MN5MN20MN9MNMN2MN2MI4MD31MN2MN11MN11MN5MN12MNMN23MN4MD3MI12MN23MN26MN17M2N2MNMNM2N2MN6MNDMI4MD3MI18MN5MDMNI18M2NMN3MN16MN5MN14MN17M2NDMI2MN6MNDM2NMI8MN6MNDMI5MN6MNI4MD8MDMNI3MN23MN6M mismatches: 230 - insertions: 44 - deletions: 42
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
2
Length
565
Sequence Type
peptide
Locations
Drawings
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
3
Length
1,698
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:256016250
      GQ483317
    • Hit length
      1,698 bp
    • E Value
      0E0
    • BLAST Score
      745.3 bits
    • Similarity
      75.57%
    • Coverage
      95.94%
    • Alignment (schematic)

      SEQ ID NO 3
      95.94% cov
      GQ483317
      96.11% cov
    • Alignment Length
      1,674 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
4
Length
565
Sequence Type
peptide
Locations
Drawings
Declared organism
Artificial
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,410
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Artificial
Determined organism
  • Influenza A virus (A/Hong Kong/1-5-MA21-3/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-5-MA21-3/1968(H3N2))

    • Public DB hit
      GI:303305367
      HM641192
      1 of 2 hits reported for Influenza A virus (A/Hong Kong/1-5-MA21-3/1968(H3N2)).
    • Hit length
      1,467 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      77.71%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      HM641192
      93.25% cov
    • Alignment Length
      1,395 bp
    • CIGAR string
      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 mismatches: 257 - insertions: 27 - deletions: 27
  • Influenza A virus (A/Hong Kong/1-1-MA21-3/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-1-MA21-3/1968(H3N2))

    • Public DB hit
      GI:193805327
      CY033091
    • Hit length
      1,429 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      77.72%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033091
      95.73% cov
    • Alignment Length
      1,396 bp
    • CIGAR string
      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 mismatches: 255 - insertions: 28 - deletions: 28
  • Influenza A virus (A/Hong Kong/1-1/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-1/1968(H3N2))

    • Public DB hit
      GI:193805118
      CY033003
    • Hit length
      1,417 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      77.72%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033003
      96.54% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/USSR/039/68(H3N2))

    Influenza A virus (A/USSR/039/68(H3N2))

    • Public DB hit
      GI:37785257
      AY210111
    • Hit length
      1,410 bp
    • E Value
      0E0
    • BLAST Score
      804.4 bits
    • Similarity
      77.72%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      AY210111
      97.02% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-2-MA21-3/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-2-MA21-3/1968(H3N2))

    • Public DB hit
      GI:319899582
      CY080501
      1 of 2 hits reported for Influenza A virus (A/Hong Kong/1-2-MA21-3/1968(H3N2)).
    • Hit length
      1,447 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY080501
      94.54% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-10-MA21-3/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-10-MA21-3/1968(H3N2))

    • Public DB hit
      GI:303305381
      HM641199
      1 of 2 hits reported for Influenza A virus (A/Hong Kong/1-10-MA21-3/1968(H3N2)).
    • Hit length
      1,454 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      HM641199
      94.09% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-4-MA21-1/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-4-MA21-1/1968(H3N2))

    • Public DB hit
      GI:303305371
      HM641194
    • Hit length
      1,467 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      HM641194
      93.25% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-6-MA21-1/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-6-MA21-1/1968(H3N2))

    • Public DB hit
      GI:303305365
      HM641191
      1 of 2 hits reported for Influenza A virus (A/Hong Kong/1-6-MA21-1/1968(H3N2)).
    • Hit length
      1,467 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      HM641191
      93.25% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1/1968(H3N2))

    Influenza A virus (A/Hong Kong/1/1968(H3N2))

    • Public DB hit
      GI:256385307
      CY044263
    • Hit length
      1,420 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY044263
      96.34% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-1-MA-12E/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-1-MA-12E/1968(H3N2))

    • Public DB hit
      GI:208342777
      CY034968
    • Hit length
      1,425 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY034968
      96% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-12-MA21-3/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-12-MA21-3/1968(H3N2))

    • Public DB hit
      GI:194352116
      CY034038
    • Hit length
      1,414 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY034038
      96.75% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-11/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-11/1968(H3N2))

    • Public DB hit
      GI:194352040
      CY034006
    • Hit length
      1,415 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY034006
      96.68% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-8/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-8/1968(H3N2))

    • Public DB hit
      GI:194352021
      CY033998
    • Hit length
      1,430 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033998
      95.66% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-1-MA-12D/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-1-MA-12D/1968(H3N2))

    • Public DB hit
      GI:194352002
      CY033990
    • Hit length
      1,426 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033990
      95.93% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-12-MA21-2/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-12-MA21-2/1968(H3N2))

    • Public DB hit
      GI:194304788
      CY033571
    • Hit length
      1,430 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033571
      95.66% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-12-MA21-1/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-12-MA21-1/1968(H3N2))

    • Public DB hit
      GI:194304769
      CY033563
    • Hit length
      1,431 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033563
      95.6% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-11-MA21-3/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-11-MA21-3/1968(H3N2))

    • Public DB hit
      GI:194304750
      CY033555
    • Hit length
      1,430 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033555
      95.66% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-11-MA21-2/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-11-MA21-2/1968(H3N2))

    • Public DB hit
      GI:194304731
      CY033547
    • Hit length
      1,430 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033547
      95.66% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-9-MA21-1/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-9-MA21-1/1968(H3N2))

    • Public DB hit
      GI:194304655
      CY033515
    • Hit length
      1,416 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033515
      96.61% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-4-MA21-2/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-4-MA21-2/1968(H3N2))

    • Public DB hit
      GI:193805384
      CY033115
    • Hit length
      1,432 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033115
      95.53% cov
    • Alignment Length
      1,396 bp
  • Influenza A virus (A/Hong Kong/1-1-MA21-2/1968(H3N2))

    Influenza A virus (A/Hong Kong/1-1-MA21-2/1968(H3N2))

    • Public DB hit
      GI:193805308
      CY033083
    • Hit length
      1,430 bp
    • E Value
      0E0
    • BLAST Score
      798.9 bits
    • Similarity
      77.65%
    • Coverage
      97.02%
    • Alignment (schematic)

      SEQ ID NO 5
      97.02% cov
      CY033083
      95.66% cov
    • Alignment Length
      1,396 bp
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
6
Length
469
Sequence Type
peptide
Locations
Drawings
Declared organism
Artificial
Determined organism
Occurrence
142 times in PatSeqDB
Tools
SEQ ID NO
7
Length
1,692
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Influenza A virus (A/NewCaledonia/20/1999(H1N1)
Determined organism
Occurrence
21 times in PatSeqDB
Tools
SEQ ID NO
8
Length
1,698
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Influenza A virus (A/Panama/2007/1999(H3N2))
Determined organism
Occurrence
5 times in PatSeqDB
Tools
SEQ ID NO
9
Length
1,446
Sequence Type
nucleotide
Locations
Claims, Detailed Description, Drawings, Summary
Declared organism
Influenza A virus (A/Panama/2007/1999(H3N2))
Determined organism
Occurrence
5 times in PatSeqDB
Tools

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