Patents
US 7550511 B2

Compositions That Bind Antiterminator Rna And Assay For Screening For Such Compositions

  • Published: Jun 23, 2009
  • Earliest Priority: Aug 24 2001
  • Family: 9
  • Cited Works: 25
  • Cited by: 0
  • Cites: 1
  • Sequences: 7
  • Additional Info: Cited Works Full text
Granted Patent
US 7550511 B2
027-050-511-521-701
Data obtained from: USPTO Fulltext NCBI GenBank DDBJ Pat EMBL-EBI Pat
7 sequences found in this patent (in total)

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Download sequences in fasta format: 7 RNAs

Displaying 7 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
29
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
2
Length
29
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
3
Length
29
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
4
Length
29
Sequence Type
RNA
Locations
Detailed Description
Declared organism
Artificial
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
5
Length
94
Sequence Type
RNA
Locations
Drawings
Declared organism
Artificial
Determined organism
  • Bacillus subtilis BSn5

    Bacillus subtilis BSn5

    • Public DB hit
      GI:320017650
      CP002468
    • Hit length
      4,093,599 bp
    • E Value
      3.08E-39
    • BLAST Score
      169.2 bits
    • Similarity
      100%
    • Coverage
      96.81%
    • Alignment (schematic)

      SEQ ID NO 5
      96.81% cov
      CP002468
      0% cov
    • Alignment Length
      91 bp
    • CIGAR string
      91M3H mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis subsp. subtilis str. 168

    Bacillus subtilis subsp. subtilis str. 168

    • Public DB hit
      GI:225184640
      AL009126
    • Hit length
      4,215,606 bp
    • E Value
      3.08E-39
    • BLAST Score
      169.2 bits
    • Similarity
      100%
    • Coverage
      96.81%
    • Alignment (schematic)

      SEQ ID NO 5
      96.81% cov
      AL009126
      0% cov
    • Alignment Length
      91 bp
    • CIGAR string
      91M3H mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis

    Bacillus subtilis

    • Public DB hit
      GI:2293135
      AF008220
      1 of 3 hits reported for Bacillus subtilis.
    • Hit length
      220,060 bp
    • E Value
      3.08E-39
    • BLAST Score
      169.2 bits
    • Similarity
      100%
    • Coverage
      96.81%
    • Alignment (schematic)

      SEQ ID NO 5
      96.81% cov
      AF008220
      0.04% cov
    • Alignment Length
      91 bp
    • CIGAR string
      91M3H mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis subsp. spizizenii str. W23

    Bacillus subtilis subsp. spizizenii str. W23

    • Public DB hit
      GI:305410941
      CP002183
    • Hit length
      4,027,676 bp
    • E Value
      1.44E-37
    • BLAST Score
      163.6 bits
    • Similarity
      98.9%
    • Coverage
      96.81%
    • Alignment (schematic)

      SEQ ID NO 5
      96.81% cov
      CP002183
      0% cov
    • Alignment Length
      91 bp
  • Bacillus atrophaeus 1942

    Bacillus atrophaeus 1942

    • Public DB hit
      GI:310867486
      CP002207
    • Hit length
      4,168,266 bp
    • E Value
      1.88E-26
    • BLAST Score
      126.7 bits
    • Similarity
      91.49%
    • Coverage
      96.81%
    • Alignment (schematic)

      SEQ ID NO 5
      96.81% cov
      CP002207
      0% cov
    • Alignment Length
      94 bp
  • Bacillus amyloliquefaciens LL3

    Bacillus amyloliquefaciens LL3

    • Public DB hit
      GI:328909959
      CP002634
    • Hit length
      3,995,227 bp
    • E Value
      5.31E-17
    • BLAST Score
      95.3 bits
    • Similarity
      87.21%
    • Coverage
      90.43%
    • Alignment (schematic)

      SEQ ID NO 5
      90.43% cov
      CP002634
      0% cov
    • Alignment Length
      86 bp
  • Bacillus amyloliquefaciens TA208

    Bacillus amyloliquefaciens TA208

    • Public DB hit
      GI:328551700
      CP002627
    • Hit length
      3,937,511 bp
    • E Value
      5.31E-17
    • BLAST Score
      95.3 bits
    • Similarity
      87.21%
    • Coverage
      90.43%
    • Alignment (schematic)

      SEQ ID NO 5
      90.43% cov
      CP002627
      0% cov
    • Alignment Length
      86 bp
  • Bacillus amyloliquefaciens DSM 7

    Bacillus amyloliquefaciens DSM 7

    • Public DB hit
      GI:307604755
      FN597644
    • Hit length
      3,980,199 bp
    • E Value
      5.31E-17
    • BLAST Score
      95.3 bits
    • Similarity
      87.21%
    • Coverage
      90.43%
    • Alignment (schematic)

      SEQ ID NO 5
      90.43% cov
      FN597644
      0% cov
    • Alignment Length
      86 bp
  • Bacillus amyloliquefaciens subsp. plantarum str. FZB42

    Bacillus amyloliquefaciens subsp. plantarum str. FZB42

    • Public DB hit
      GI:154350369
      CP000560
    • Hit length
      3,918,589 bp
    • E Value
      2.47E-15
    • BLAST Score
      89.8 bits
    • Similarity
      86.05%
    • Coverage
      90.43%
    • Alignment (schematic)

      SEQ ID NO 5
      90.43% cov
      CP000560
      0% cov
    • Alignment Length
      86 bp
  • Bacillus licheniformis DSM 13 = ATCC 14580

    Bacillus licheniformis DSM 13 = ATCC 14580

    • Public DB hit
      GI:145902672
      CP000002
      1 of 2 hits reported for Bacillus licheniformis DSM 13 = ATCC 14580.
    • Hit length
      4,222,597 bp
    • E Value
      1.16E-8
    • BLAST Score
      67.6 bits
    • Similarity
      80.61%
    • Coverage
      96.81%
    • Alignment (schematic)

      SEQ ID NO 5
      96.81% cov
      CP000002
      0% cov
    • Alignment Length
      98 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
6
Length
32
Sequence Type
RNA
Locations
Drawings
Declared organism
Artificial
Determined organism
  • Bacillus subtilis BSn5

    Bacillus subtilis BSn5

    • Public DB hit
      GI:320017650
      CP002468
    • Hit length
      4,093,599 bp
    • E Value
      2.78E-8
    • BLAST Score
      63.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002468
      0% cov
    • Alignment Length
      32 bp
    • CIGAR string
      32M mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis subsp. subtilis str. 168

    Bacillus subtilis subsp. subtilis str. 168

    • Public DB hit
      GI:225184640
      AL009126
    • Hit length
      4,215,606 bp
    • E Value
      2.78E-8
    • BLAST Score
      63.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AL009126
      0% cov
    • Alignment Length
      32 bp
    • CIGAR string
      32M mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis

    Bacillus subtilis

    • Public DB hit
      GI:2293135
      AF008220
      1 of 3 hits reported for Bacillus subtilis.
    • Hit length
      220,060 bp
    • E Value
      2.78E-8
    • BLAST Score
      63.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AF008220
      0.01% cov
    • Alignment Length
      32 bp
    • CIGAR string
      32M mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis subsp. spizizenii str. W23

    Bacillus subtilis subsp. spizizenii str. W23

    • Public DB hit
      GI:305410941
      CP002183
    • Hit length
      4,027,676 bp
    • E Value
      6.77E-6
    • BLAST Score
      56 bits
    • Similarity
      96.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002183
      0% cov
    • Alignment Length
      32 bp
  • Bacillus atrophaeus 1942

    Bacillus atrophaeus 1942

    • Public DB hit
      GI:310867486
      CP002207
    • Hit length
      4,168,266 bp
    • E Value
      1.65E-3
    • BLAST Score
      48.1 bits
    • Similarity
      96.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002207
      0% cov
    • Alignment Length
      32 bp
  • Bacillus thuringiensis serovar finitimus YBT-020

    Bacillus thuringiensis serovar finitimus YBT-020

    • Public DB hit
      GI:324323994
      CP002508
    • Hit length
      5,355,490 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      CP002508
      0% cov
    • Alignment Length
      31 bp
  • Bacillus anthracis str. A0248

    Bacillus anthracis str. A0248

    • Public DB hit
      GI:229264291
      CP001598
    • Hit length
      5,227,419 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      CP001598
      0% cov
    • Alignment Length
      31 bp
  • Bacillus anthracis str. CDC 684

    Bacillus anthracis str. CDC 684

    • Public DB hit
      GI:227002338
      CP001215
    • Hit length
      5,230,115 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      CP001215
      0% cov
    • Alignment Length
      31 bp
  • Bacillus cereus Q1

    Bacillus cereus Q1

    • Public DB hit
      GI:221237819
      CP000227
    • Hit length
      5,214,195 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      CP000227
      0% cov
    • Alignment Length
      31 bp
  • Bacillus anthracis str. 'Ames Ancestor'

    Bacillus anthracis str. 'Ames Ancestor'

    • Public DB hit
      GI:50082967
      AE017334
    • Hit length
      5,227,419 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      AE017334
      0% cov
    • Alignment Length
      31 bp
  • Bacillus anthracis str. Sterne

    Bacillus anthracis str. Sterne

    • Public DB hit
      GI:49176966
      AE017225
    • Hit length
      5,228,663 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      AE017225
      0% cov
    • Alignment Length
      31 bp
  • Bacillus cereus ATCC 10987

    Bacillus cereus ATCC 10987

    • Public DB hit
      GI:42740913
      AE017194
    • Hit length
      5,224,283 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      AE017194
      0% cov
    • Alignment Length
      31 bp
  • Bacillus anthracis str. Ames

    Bacillus anthracis str. Ames

    • Public DB hit
      GI:30260185
      AE016879
    • Hit length
      5,227,293 bp
    • E Value
      6.52E-3
    • BLAST Score
      46.1 bits
    • Similarity
      93.55%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 6
      96.88% cov
      AE016879
      0% cov
    • Alignment Length
      31 bp
  • Geobacillus thermoglucosidasius C56-YS93

    Geobacillus thermoglucosidasius C56-YS93

    • Public DB hit
      GI:335360401
      CP002835
    • Hit length
      3,893,306 bp
    • E Value
      4.02E-1
    • BLAST Score
      40.1 bits
    • Similarity
      90.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002835
      0% cov
    • Alignment Length
      32 bp
  • Enterococcus faecalis OG1RF

    Enterococcus faecalis OG1RF

    • Public DB hit
      GI:327533853
      CP002621
    • Hit length
      2,739,625 bp
    • E Value
      4.02E-1
    • BLAST Score
      40.1 bits
    • Similarity
      90.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002621
      0% cov
    • Alignment Length
      32 bp
  • Enterococcus faecalis 62

    Enterococcus faecalis 62

    • Public DB hit
      GI:323478858
      CP002491
    • Hit length
      2,988,673 bp
    • E Value
      4.02E-1
    • BLAST Score
      40.1 bits
    • Similarity
      90.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002491
      0% cov
    • Alignment Length
      32 bp
  • Geobacillus sp. Y4.1MC1

    Geobacillus sp. Y4.1MC1

    • Public DB hit
      GI:311214252
      CP002293
    • Hit length
      3,840,330 bp
    • E Value
      4.02E-1
    • BLAST Score
      40.1 bits
    • Similarity
      90.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP002293
      0% cov
    • Alignment Length
      32 bp
  • Enterococcus sp. 7L76

    Enterococcus sp. 7L76

    • Public DB hit
      GI:295112306
      FP929058
    • Hit length
      3,096,657 bp
    • E Value
      4.02E-1
    • BLAST Score
      40.1 bits
    • Similarity
      90.62%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      FP929058
      0% cov
    • Alignment Length
      32 bp
  • Geobacillus sp. WCH70

    Geobacillus sp. WCH70

    • Public DB hit
      GI:239805877
      CP001638
    • Hit length
      3,464,618 bp
    • E Value
      4.02E-1
    • BLAST Score
      40.1 bits
    • Similarity
      93.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CP001638
      0% cov
    • Alignment Length
      32 bp
Occurrence
2 times in PatSeqDB
Tools
SEQ ID NO
7
Length
32
Sequence Type
RNA
Locations
Drawings
Declared organism
Artificial
Determined organism
  • Bacillus subtilis BSn5

    Bacillus subtilis BSn5

    • Public DB hit
      GI:320017650
      CP002468
    • Hit length
      4,093,599 bp
    • E Value
      2.78E-8
    • BLAST Score
      63.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP002468
      0% cov
    • Alignment Length
      32 bp
    • CIGAR string
      32M mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis subsp. subtilis str. 168

    Bacillus subtilis subsp. subtilis str. 168

    • Public DB hit
      GI:225184640
      AL009126
    • Hit length
      4,215,606 bp
    • E Value
      2.78E-8
    • BLAST Score
      63.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AL009126
      0% cov
    • Alignment Length
      32 bp
    • CIGAR string
      32M mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus subtilis

    Bacillus subtilis

    • Public DB hit
      GI:2293135
      AF008220
      1 of 3 hits reported for Bacillus subtilis.
    • Hit length
      220,060 bp
    • E Value
      2.78E-8
    • BLAST Score
      63.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AF008220
      0.01% cov
    • Alignment Length
      32 bp
    • CIGAR string
      32M mismatches: 0 - insertions: 0 - deletions: 0
  • Bacillus atrophaeus 1942

    Bacillus atrophaeus 1942

    • Public DB hit
      GI:310867486
      CP002207
    • Hit length
      4,168,266 bp
    • E Value
      1.1E-7
    • BLAST Score
      61.9 bits
    • Similarity
      100%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 7
      96.88% cov
      CP002207
      0% cov
    • Alignment Length
      31 bp
  • Bacillus subtilis subsp. spizizenii str. W23

    Bacillus subtilis subsp. spizizenii str. W23

    • Public DB hit
      GI:305410941
      CP002183
    • Hit length
      4,027,676 bp
    • E Value
      1.1E-7
    • BLAST Score
      61.9 bits
    • Similarity
      100%
    • Coverage
      96.88%
    • Alignment (schematic)

      SEQ ID NO 7
      96.88% cov
      CP002183
      0% cov
    • Alignment Length
      31 bp
  • Bacillus amyloliquefaciens LL3

    Bacillus amyloliquefaciens LL3

    • Public DB hit
      GI:328909959
      CP002634
    • Hit length
      3,995,227 bp
    • E Value
      1.02E-1
    • BLAST Score
      42.1 bits
    • Similarity
      93.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP002634
      0% cov
    • Alignment Length
      33 bp
  • Bacillus amyloliquefaciens TA208

    Bacillus amyloliquefaciens TA208

    • Public DB hit
      GI:328551700
      CP002627
    • Hit length
      3,937,511 bp
    • E Value
      1.02E-1
    • BLAST Score
      42.1 bits
    • Similarity
      93.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP002627
      0% cov
    • Alignment Length
      33 bp
  • Bacillus amyloliquefaciens DSM 7

    Bacillus amyloliquefaciens DSM 7

    • Public DB hit
      GI:307604755
      FN597644
    • Hit length
      3,980,199 bp
    • E Value
      1.02E-1
    • BLAST Score
      42.1 bits
    • Similarity
      93.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      FN597644
      0% cov
    • Alignment Length
      33 bp
  • Bacillus amyloliquefaciens subsp. plantarum str. FZB42

    Bacillus amyloliquefaciens subsp. plantarum str. FZB42

    • Public DB hit
      GI:154350369
      CP000560
    • Hit length
      3,918,589 bp
    • E Value
      1.02E-1
    • BLAST Score
      42.1 bits
    • Similarity
      93.94%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CP000560
      0% cov
    • Alignment Length
      33 bp
Occurrence
2 times in PatSeqDB
Tools

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