US 7550511 B2 - Compositions That Bind Antiterminator Rna And Assay For Screening For Such Compositions - The Lens

Compositions That Bind Antiterminator Rna And Assay For Screening For Such Compositions

Published: Jun 23, 2009
Earliest Priority: Aug 24 2001
Family: 9
Cited Works: 25
Cited by: 0
Cites: 1
Sequences: 7
Additional Info: Cited Works Full text Published Sequence

Data obtained from: DDBJ Pat NCBI GenBank USPTO Fulltext EMBL-EBI Pat

7 sequences found in this patent (in total)

Download sequences in fasta format: 7 RNAs

Displaying 7 sequences

SEQ ID NO

Length

Sequence Type

Locations

Declared organism

Determined organism

Occurrence

Tools

SEQ ID NO

Length

Sequence Type

RNA

Locations

Detailed Description

Declared organism

Artificial

Determined organism

Occurrence

3 times in PatSeqDB

in 3 documents

Tools

SEQ ID NO

Length

Sequence Type

RNA

Locations

Detailed Description

Declared organism

Artificial

Determined organism

Occurrence

3 times in PatSeqDB

in 3 documents

Tools

SEQ ID NO

Length

Sequence Type

RNA

Locations

Detailed Description

Declared organism

Artificial

Determined organism

Occurrence

3 times in PatSeqDB

in 3 documents

Tools

SEQ ID NO

Length

Sequence Type

RNA

Locations

Detailed Description

Declared organism

Artificial

Determined organism

Occurrence

3 times in PatSeqDB

in 3 documents

Tools

SEQ ID NO

Length

Sequence Type

RNA

Locations

Drawings

Declared organism

Artificial

Determined organism

Bacillus subtilis BSn5
Bacillus subtilis BSn5
Public DB hit
GI:320017650
CP002468

Hit length
4,093,599 bp

E Value
3.08E-39

BLAST Score
169.2 bits

Similarity

100%

Coverage

96.81%

Alignment (schematic)

SEQ ID NO 5

96.81% cov
CP002468

0% cov

Alignment Length
91 bp

CIGAR string
91M3H mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
Public DB hit
GI:225184640
AL009126

Hit length
4,215,606 bp

E Value
3.08E-39

BLAST Score
169.2 bits

Similarity

100%

Coverage

96.81%

Alignment (schematic)

SEQ ID NO 5

96.81% cov
AL009126

0% cov

Alignment Length
91 bp

CIGAR string
91M3H mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis
Bacillus subtilis
Public DB hit
GI:2293135
AF008220
1 of 3 hits reported for Bacillus subtilis.

Hit length
220,060 bp

E Value
3.08E-39

BLAST Score
169.2 bits

Similarity

100%

Coverage

96.81%

Alignment (schematic)

SEQ ID NO 5

96.81% cov
AF008220

0.04% cov

Alignment Length
91 bp

CIGAR string
91M3H mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis subsp. spizizenii str. W23
Bacillus subtilis subsp. spizizenii str. W23
Public DB hit
GI:305410941
CP002183

Hit length
4,027,676 bp

E Value
1.44E-37

BLAST Score
163.6 bits

Similarity

98.9%

Coverage

96.81%

Alignment (schematic)

SEQ ID NO 5

96.81% cov
CP002183

0% cov

Alignment Length
91 bp
Bacillus atrophaeus 1942
Bacillus atrophaeus 1942
Public DB hit
GI:310867486
CP002207

Hit length
4,168,266 bp

E Value
1.88E-26

BLAST Score
126.7 bits

Similarity

91.49%

Coverage

96.81%

Alignment (schematic)

SEQ ID NO 5

96.81% cov
CP002207

0% cov

Alignment Length
94 bp
Bacillus amyloliquefaciens LL3
Bacillus amyloliquefaciens LL3
Public DB hit
GI:328909959
CP002634

Hit length
3,995,227 bp

E Value
5.31E-17

BLAST Score
95.3 bits

Similarity

87.21%

Coverage

90.43%

Alignment (schematic)

SEQ ID NO 5

90.43% cov
CP002634

0% cov

Alignment Length
86 bp
Bacillus amyloliquefaciens TA208
Bacillus amyloliquefaciens TA208
Public DB hit
GI:328551700
CP002627

Hit length
3,937,511 bp

E Value
5.31E-17

BLAST Score
95.3 bits

Similarity

87.21%

Coverage

90.43%

Alignment (schematic)

SEQ ID NO 5

90.43% cov
CP002627

0% cov

Alignment Length
86 bp
Bacillus amyloliquefaciens DSM 7
Bacillus amyloliquefaciens DSM 7
Public DB hit
GI:307604755
FN597644

Hit length
3,980,199 bp

E Value
5.31E-17

BLAST Score
95.3 bits

Similarity

87.21%

Coverage

90.43%

Alignment (schematic)

SEQ ID NO 5

90.43% cov
FN597644

0% cov

Alignment Length
86 bp
Bacillus amyloliquefaciens subsp. plantarum str. FZB42
Bacillus amyloliquefaciens subsp. plantarum str. FZB42
Public DB hit
GI:154350369
CP000560

Hit length
3,918,589 bp

E Value
2.47E-15

BLAST Score
89.8 bits

Similarity

86.05%

Coverage

90.43%

Alignment (schematic)

SEQ ID NO 5

90.43% cov
CP000560

0% cov

Alignment Length
86 bp
Bacillus licheniformis DSM 13 = ATCC 14580
Bacillus licheniformis DSM 13 = ATCC 14580
Public DB hit
GI:145902672
CP000002
1 of 2 hits reported for Bacillus licheniformis DSM 13 = ATCC 14580.

Hit length
4,222,597 bp

E Value
1.16E-8

BLAST Score
67.6 bits

Similarity

80.61%

Coverage

96.81%

Alignment (schematic)

SEQ ID NO 5

96.81% cov
CP000002

0% cov

Alignment Length
98 bp

Occurrence

2 times in PatSeqDB

in 2 documents

Tools

SEQ ID NO

Length

Sequence Type

RNA

Locations

Drawings

Declared organism

Artificial

Determined organism

Bacillus subtilis BSn5
Bacillus subtilis BSn5
Public DB hit
GI:320017650
CP002468

Hit length
4,093,599 bp

E Value
2.78E-8

BLAST Score
63.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP002468

0% cov

Alignment Length
32 bp

CIGAR string
32M mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
Public DB hit
GI:225184640
AL009126

Hit length
4,215,606 bp

E Value
2.78E-8

BLAST Score
63.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
AL009126

0% cov

Alignment Length
32 bp

CIGAR string
32M mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis
Bacillus subtilis
Public DB hit
GI:2293135
AF008220
1 of 3 hits reported for Bacillus subtilis.

Hit length
220,060 bp

E Value
2.78E-8

BLAST Score
63.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
AF008220

0.01% cov

Alignment Length
32 bp

CIGAR string
32M mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis subsp. spizizenii str. W23
Bacillus subtilis subsp. spizizenii str. W23
Public DB hit
GI:305410941
CP002183

Hit length
4,027,676 bp

E Value
6.77E-6

BLAST Score
56 bits

Similarity

96.88%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP002183

0% cov

Alignment Length
32 bp
Bacillus atrophaeus 1942
Bacillus atrophaeus 1942
Public DB hit
GI:310867486
CP002207

Hit length
4,168,266 bp

E Value
1.65E-3

BLAST Score
48.1 bits

Similarity

96.88%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP002207

0% cov

Alignment Length
32 bp
Bacillus thuringiensis serovar finitimus YBT-020
Bacillus thuringiensis serovar finitimus YBT-020
Public DB hit
GI:324323994
CP002508

Hit length
5,355,490 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
CP002508

0% cov

Alignment Length
31 bp
Bacillus anthracis str. A0248
Bacillus anthracis str. A0248
Public DB hit
GI:229264291
CP001598

Hit length
5,227,419 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
CP001598

0% cov

Alignment Length
31 bp
Bacillus anthracis str. CDC 684
Bacillus anthracis str. CDC 684
Public DB hit
GI:227002338
CP001215

Hit length
5,230,115 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
CP001215

0% cov

Alignment Length
31 bp
Bacillus cereus Q1
Bacillus cereus Q1
Public DB hit
GI:221237819
CP000227

Hit length
5,214,195 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
CP000227

0% cov

Alignment Length
31 bp
Bacillus anthracis str. 'Ames Ancestor'
Bacillus anthracis str. 'Ames Ancestor'
Public DB hit
GI:50082967
AE017334

Hit length
5,227,419 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
AE017334

0% cov

Alignment Length
31 bp
Bacillus anthracis str. Sterne
Bacillus anthracis str. Sterne
Public DB hit
GI:49176966
AE017225

Hit length
5,228,663 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
AE017225

0% cov

Alignment Length
31 bp
Bacillus cereus ATCC 10987
Bacillus cereus ATCC 10987
Public DB hit
GI:42740913
AE017194

Hit length
5,224,283 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
AE017194

0% cov

Alignment Length
31 bp
Bacillus anthracis str. Ames
Bacillus anthracis str. Ames
Public DB hit
GI:30260185
AE016879

Hit length
5,227,293 bp

E Value
6.52E-3

BLAST Score
46.1 bits

Similarity

93.55%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 6

96.88% cov
AE016879

0% cov

Alignment Length
31 bp
Geobacillus thermoglucosidasius C56-YS93
Geobacillus thermoglucosidasius C56-YS93
Public DB hit
GI:335360401
CP002835

Hit length
3,893,306 bp

E Value
4.02E-1

BLAST Score
40.1 bits

Similarity

90.62%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP002835

0% cov

Alignment Length
32 bp
Enterococcus faecalis OG1RF
Enterococcus faecalis OG1RF
Public DB hit
GI:327533853
CP002621

Hit length
2,739,625 bp

E Value
4.02E-1

BLAST Score
40.1 bits

Similarity

90.62%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP002621

0% cov

Alignment Length
32 bp
Enterococcus faecalis 62
Enterococcus faecalis 62
Public DB hit
GI:323478858
CP002491

Hit length
2,988,673 bp

E Value
4.02E-1

BLAST Score
40.1 bits

Similarity

90.62%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP002491

0% cov

Alignment Length
32 bp
Geobacillus sp. Y4.1MC1
Geobacillus sp. Y4.1MC1
Public DB hit
GI:311214252
CP002293

Hit length
3,840,330 bp

E Value
4.02E-1

BLAST Score
40.1 bits

Similarity

90.62%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP002293

0% cov

Alignment Length
32 bp
Enterococcus sp. 7L76
Enterococcus sp. 7L76
Public DB hit
GI:295112306
FP929058

Hit length
3,096,657 bp

E Value
4.02E-1

BLAST Score
40.1 bits

Similarity

90.62%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
FP929058

0% cov

Alignment Length
32 bp
Geobacillus sp. WCH70
Geobacillus sp. WCH70
Public DB hit
GI:239805877
CP001638

Hit length
3,464,618 bp

E Value
4.02E-1

BLAST Score
40.1 bits

Similarity

93.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CP001638

0% cov

Alignment Length
32 bp

Occurrence

2 times in PatSeqDB

in 2 documents

Tools

SEQ ID NO

Length

Sequence Type

RNA

Locations

Drawings

Declared organism

Artificial

Determined organism

Bacillus subtilis BSn5
Bacillus subtilis BSn5
Public DB hit
GI:320017650
CP002468

Hit length
4,093,599 bp

E Value
2.78E-8

BLAST Score
63.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CP002468

0% cov

Alignment Length
32 bp

CIGAR string
32M mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
Public DB hit
GI:225184640
AL009126

Hit length
4,215,606 bp

E Value
2.78E-8

BLAST Score
63.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
AL009126

0% cov

Alignment Length
32 bp

CIGAR string
32M mismatches: 0 - insertions: 0 - deletions: 0
Bacillus subtilis
Bacillus subtilis
Public DB hit
GI:2293135
AF008220
1 of 3 hits reported for Bacillus subtilis.

Hit length
220,060 bp

E Value
2.78E-8

BLAST Score
63.9 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
AF008220

0.01% cov

Alignment Length
32 bp

CIGAR string
32M mismatches: 0 - insertions: 0 - deletions: 0
Bacillus atrophaeus 1942
Bacillus atrophaeus 1942
Public DB hit
GI:310867486
CP002207

Hit length
4,168,266 bp

E Value
1.1E-7

BLAST Score
61.9 bits

Similarity

100%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 7

96.88% cov
CP002207

0% cov

Alignment Length
31 bp
Bacillus subtilis subsp. spizizenii str. W23
Bacillus subtilis subsp. spizizenii str. W23
Public DB hit
GI:305410941
CP002183

Hit length
4,027,676 bp

E Value
1.1E-7

BLAST Score
61.9 bits

Similarity

100%

Coverage

96.88%

Alignment (schematic)

SEQ ID NO 7

96.88% cov
CP002183

0% cov

Alignment Length
31 bp
Bacillus amyloliquefaciens LL3
Bacillus amyloliquefaciens LL3
Public DB hit
GI:328909959
CP002634

Hit length
3,995,227 bp

E Value
1.02E-1

BLAST Score
42.1 bits

Similarity

93.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CP002634

0% cov

Alignment Length
33 bp
Bacillus amyloliquefaciens TA208
Bacillus amyloliquefaciens TA208
Public DB hit
GI:328551700
CP002627

Hit length
3,937,511 bp

E Value
1.02E-1

BLAST Score
42.1 bits

Similarity

93.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CP002627

0% cov

Alignment Length
33 bp
Bacillus amyloliquefaciens DSM 7
Bacillus amyloliquefaciens DSM 7
Public DB hit
GI:307604755
FN597644

Hit length
3,980,199 bp

E Value
1.02E-1

BLAST Score
42.1 bits

Similarity

93.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
FN597644

0% cov

Alignment Length
33 bp
Bacillus amyloliquefaciens subsp. plantarum str. FZB42
Bacillus amyloliquefaciens subsp. plantarum str. FZB42
Public DB hit
GI:154350369
CP000560

Hit length
3,918,589 bp

E Value
1.02E-1

BLAST Score
42.1 bits

Similarity

93.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
CP000560

0% cov

Alignment Length
33 bp

Occurrence

2 times in PatSeqDB

in 2 documents

Tools

7 sequences found in this patent (in total)

Filter sequences

Displaying 7 sequences

Bacillus subtilis BSn5

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Bacillus subtilis subsp. subtilis str. 168

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Bacillus subtilis

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Bacillus subtilis subsp. spizizenii str. W23

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Bacillus atrophaeus 1942

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Bacillus amyloliquefaciens LL3

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Bacillus amyloliquefaciens TA208

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Bacillus amyloliquefaciens DSM 7

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Bacillus amyloliquefaciens subsp. plantarum str. FZB42

Public DB hit