US 2007/0196388 A1 - Cold-adapted Equine Influenza Viruses - The Lens

Data obtained from: USPTO Fulltext

43 sequences found in this patent (in total)

Download sequences in fasta format: 8 peptides 35 nucleotides

Displaying 1 - 10 of 43 sequences

SEQ ID NO

Length

Sequence Type

Locations

Declared organism

Determined organism

Occurrence

Tools

SEQ ID NO

Length

1,023

Sequence Type

nucleotide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:324317
M63529

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,836.7 bits

Similarity

99.02%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
M63529

99.61% cov

Alignment Length
1,023 bp

CIGAR string
212MN218MN53MN35MN128MN2MN8MN11MN98MN118MN130M mismatches: 10 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Public DB hit
GI:60547112
AY855344

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,836.7 bits

Similarity

99.02%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AY855344

99.61% cov

Alignment Length
1,023 bp

CIGAR string
186MN22MN164MN110MN107MN11MN2MN53MN71MN111MN176M mismatches: 10 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269825457
GU052338

Hit length
1,002 bp

E Value
0E0

BLAST Score
1,825.6 bits

Similarity

99.5%

Coverage

97.95%

Alignment (schematic)

SEQ ID NO 1

97.95% cov
GU052338

100% cov

Alignment Length
1,002 bp

CIGAR string
11H201MN218MN53MN176MN11MN338M10H mismatches: 5 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481130
CY030174

Hit length
990 bp

E Value
0E0

BLAST Score
1,825.6 bits

Similarity

99.9%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 1

96.77% cov
CY030174

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Ohio/1/2003(H3N8))
Influenza A virus (A/equine/Ohio/1/2003(H3N8))
Public DB hit
GI:76443311
DQ124188

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,825.6 bits

Similarity

98.83%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
DQ124188

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/equine/Massachussetts/213/2003(H3N8))
Influenza A virus (A/equine/Massachussetts/213/2003(H3N8))
Public DB hit
GI:76443308
DQ124162

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,825.6 bits

Similarity

98.83%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
DQ124162

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/canine/Texas/1/2004(H3N8))
Influenza A virus (A/canine/Texas/1/2004(H3N8))
Public DB hit
GI:76443314
DQ124197

Hit length
1,026 bp

E Value
0E0

BLAST Score
1,820.1 bits

Similarity

98.82%

Coverage

99.71%

Alignment (schematic)

SEQ ID NO 1

99.71% cov
DQ124197

99.42% cov

Alignment Length
1,020 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433605
CY018870

Hit length
991 bp

E Value
0E0

BLAST Score
1,810.8 bits

Similarity

99.6%

Coverage

96.87%

Alignment (schematic)

SEQ ID NO 1

96.87% cov
CY018870

100% cov

Alignment Length
991 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481149
CY030182

Hit length
990 bp

E Value
0E0

BLAST Score
1,809 bits

Similarity

99.6%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 1

96.77% cov
CY030182

100% cov

Alignment Length
990 bp
Influenza A virus (A/swine/Chibi/01/2005(H3N8))
Influenza A virus (A/swine/Chibi/01/2005(H3N8))
Public DB hit
GI:202071770
FJ200429

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,803.5 bits

Similarity

98.44%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
FJ200429

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/swine/Anhui/01/2006(H3N8))
Influenza A virus (A/swine/Anhui/01/2006(H3N8))
Public DB hit
GI:202071751
FJ200421

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,803.5 bits

Similarity

98.44%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
FJ200421

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504013
CY031539

Hit length
990 bp

E Value
0E0

BLAST Score
1,803.5 bits

Similarity

99.49%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 1

96.77% cov
CY031539

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480959
CY030102

Hit length
990 bp

E Value
0E0

BLAST Score
1,803.5 bits

Similarity

99.49%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 1

96.77% cov
CY030102

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481054
CY030142

Hit length
985 bp

E Value
0E0

BLAST Score
1,799.8 bits

Similarity

99.59%

Coverage

96.29%

Alignment (schematic)

SEQ ID NO 1

96.29% cov
CY030142

100% cov

Alignment Length
985 bp
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Public DB hit
GI:3414643
AF001680

Hit length
982 bp

E Value
0E0

BLAST Score
1,799.8 bits

Similarity

99.69%

Coverage

95.99%

Alignment (schematic)

SEQ ID NO 1

95.99% cov
AF001680

100% cov

Alignment Length
982 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481092
CY030158

Hit length
990 bp

E Value
0E0

BLAST Score
1,797.9 bits

Similarity

99.39%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 1

96.77% cov
CY030158

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835061
CY030752

Hit length
989 bp

E Value
0E0

BLAST Score
1,796.1 bits

Similarity

99.39%

Coverage

96.68%

Alignment (schematic)

SEQ ID NO 1

96.68% cov
CY030752

100% cov

Alignment Length
989 bp
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481073
CY030150

Hit length
989 bp

E Value
0E0

BLAST Score
1,796.1 bits

Similarity

99.39%

Coverage

96.68%

Alignment (schematic)

SEQ ID NO 1

96.68% cov
CY030150

100% cov

Alignment Length
989 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481016
CY030126

Hit length
991 bp

E Value
0E0

BLAST Score
1,794.2 bits

Similarity

99.29%

Coverage

96.87%

Alignment (schematic)

SEQ ID NO 1

96.87% cov
CY030126

100% cov

Alignment Length
991 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168480997
CY030118

Hit length
990 bp

E Value
0E0

BLAST Score
1,792.4 bits

Similarity

99.29%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 1

96.77% cov
CY030118

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480978
CY030110

Hit length
990 bp

E Value
0E0

BLAST Score
1,792.4 bits

Similarity

99.29%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 1

96.77% cov
CY030110

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481035
CY030134

Hit length
989 bp

E Value
0E0

BLAST Score
1,790.5 bits

Similarity

99.29%

Coverage

96.68%

Alignment (schematic)

SEQ ID NO 1

96.68% cov
CY030134

100% cov

Alignment Length
989 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193804992
CY032954

Hit length
985 bp

E Value
0E0

BLAST Score
1,788.7 bits

Similarity

99.39%

Coverage

96.29%

Alignment (schematic)

SEQ ID NO 1

96.29% cov
CY032954

100% cov

Alignment Length
985 bp
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Public DB hit
GI:3414640
AF001679

Hit length
982 bp

E Value
0E0

BLAST Score
1,788.7 bits

Similarity

99.49%

Coverage

95.99%

Alignment (schematic)

SEQ ID NO 1

95.99% cov
AF001679

100% cov

Alignment Length
982 bp
Influenza A virus (A/equine/Tottori/1/07(H3N8))
Influenza A virus (A/equine/Tottori/1/07(H3N8))
Public DB hit
GI:327187713
AB591848

Hit length
1,045 bp

E Value
0E0

BLAST Score
1,786.8 bits

Similarity

98.14%

Coverage

100%

Alignment (schematic)

SEQ ID NO 1

100% cov
AB591848

97.89% cov

Alignment Length
1,023 bp

Occurrence

20 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

252

Sequence Type

peptide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Public DB hit
GI:75557658
Q77ZK7

Hit length
252 aa

E Value
2.82E-146

BLAST Score
522.7 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
Q77ZK7

100% cov

Alignment Length
252 aa

CIGAR string
212MN39M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Cordoba/18/1985(H3N8))
Influenza A virus (A/equine/Cordoba/18/1985(H3N8))
Public DB hit
GI:189230577
ACD85276

Hit length
252 aa

E Value
3.68E-146

BLAST Score
522.3 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACD85276

100% cov

Alignment Length
252 aa

CIGAR string
204MN7MN39M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486674
ACI48800

Hit length
252 aa

E Value
4.21E-146

BLAST Score
521.9 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACI48800

100% cov

Alignment Length
252 aa

CIGAR string
13MN198MN39M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/California/1/1980(H3N8))
Influenza A virus (A/equine/California/1/1980(H3N8))
Public DB hit
GI:166079488
ABY81460

Hit length
252 aa

E Value
6.44E-146

BLAST Score
521.5 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ABY81460

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Florida/242/2003(H3N8))
Influenza A virus (A/canine/Florida/242/2003(H3N8))
Public DB hit
GI:76443306
ABA42435

Hit length
252 aa

E Value
7.06E-146

BLAST Score
521.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ABA42435

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Public DB hit
GI:189230634
ACD85309

Hit length
252 aa

E Value
7.74E-146

BLAST Score
521.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACD85309

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Fontainebleau/1/1979(H3N8))
Influenza A virus (A/equine/Fontainebleau/1/1979(H3N8))
Public DB hit
GI:189230786
ACD85397

Hit length
252 aa

E Value
9.07E-146

BLAST Score
520.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACD85397

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Florida/61156-2/2006(H3N8))
Influenza A virus (A/canine/Florida/61156-2/2006(H3N8))
Public DB hit
GI:304414780
ADM29576

Hit length
252 aa

E Value
9.22E-146

BLAST Score
520.8 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ADM29576

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/New York/115809/2005(H3N8))
Influenza A virus (A/canine/New York/115809/2005(H3N8))
Public DB hit
GI:304412951
ADM29246

Hit length
252 aa

E Value
9.22E-146

BLAST Score
520.8 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ADM29246

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Kentucky/4/1980(H3N8))
Influenza A virus (A/equine/Kentucky/4/1980(H3N8))
Public DB hit
GI:166079469
ABY81449

Hit length
252 aa

E Value
1.13E-145

BLAST Score
520.4 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ABY81449

100% cov

Alignment Length
252 aa
Influenza A virus (A/eq/Kentucky/92(H3N8))
Influenza A virus (A/eq/Kentucky/92(H3N8))
Public DB hit
GI:3414653
AAC31290

Hit length
252 aa

E Value
1.13E-145

BLAST Score
520.4 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
AAC31290

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Xinjiang/3/2007(H3N8))
Influenza A virus (A/equine/Xinjiang/3/2007(H3N8))
Public DB hit
GI:190683107
ACE81853

Hit length
252 aa

E Value
1.34E-145

BLAST Score
520.4 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACE81853

100% cov

Alignment Length
252 aa
Influenza A Virus (A/equine/Brno/1/1995(H3N8))
Influenza A Virus (A/equine/Brno/1/1995(H3N8))
Public DB hit
GI:255965183
ACU44887

Hit length
252 aa

E Value
1.48E-145

BLAST Score
520 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACU44887

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Florida/43/2004(H3N8))
Influenza A virus (A/canine/Florida/43/2004(H3N8))
Public DB hit
GI:76443303
ABA42433

Hit length
252 aa

E Value
1.77E-145

BLAST Score
520 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ABA42433

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/New York/5183-6/2006(H3N8))
Influenza A virus (A/canine/New York/5183-6/2006(H3N8))
Public DB hit
GI:304413808
ADM29323

Hit length
252 aa

E Value
1.81E-145

BLAST Score
520 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ADM29323

100% cov

Alignment Length
252 aa
Influenza A virus (A/gull/Massachusetts/26/1980(H13N6))
Influenza A virus (A/gull/Massachusetts/26/1980(H13N6))
Public DB hit
GI:75555540
Q76V02

Hit length
252 aa

E Value
2.05E-145

BLAST Score
519.6 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
Q76V02

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Kentucky/118778/2006(H3N8))
Influenza A virus (A/canine/Kentucky/118778/2006(H3N8))
Public DB hit
GI:304414659
ADM29521

Hit length
252 aa

E Value
2.09E-145

BLAST Score
519.6 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ADM29521

100% cov

Alignment Length
252 aa
Influenza A virus (A/chicken/Korea/S6/03(H3N2))
Influenza A virus (A/chicken/Korea/S6/03(H3N2))
Public DB hit
GI:58429273
AAW78063

Hit length
255 aa

E Value
2.14E-145

BLAST Score
519.6 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
AAW78063

98.82% cov

Alignment Length
252 aa
Influenza A virus (A/equine/New York/1/1975(H3N8))
Influenza A virus (A/equine/New York/1/1975(H3N8))
Public DB hit
GI:168481440
ACA24917

Hit length
252 aa

E Value
2.2E-145

BLAST Score
519.6 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACA24917

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Pennsylvania/137154/2008(H3N8))
Influenza A virus (A/canine/Pennsylvania/137154/2008(H3N8))
Public DB hit
GI:304415017
ADM29675

Hit length
252 aa

E Value
2.25E-145

BLAST Score
519.6 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ADM29675

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Kentucky/2/1980(H3N8))
Influenza A virus (A/equine/Kentucky/2/1980(H3N8))
Public DB hit
GI:193804955
ACF22116

Hit length
252 aa

E Value
2.29E-145

BLAST Score
519.6 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACF22116

100% cov

Alignment Length
252 aa
Influenza A virus (A/eq/LaPlata/93(H3N8))
Influenza A virus (A/eq/LaPlata/93(H3N8))
Public DB hit
GI:3414659
AAC31294

Hit length
252 aa

E Value
2.35E-145

BLAST Score
519.6 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
AAC31294

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/NY/dog2c10/2009(H3N8))
Influenza A virus (A/canine/NY/dog2c10/2009(H3N8))
Public DB hit
GI:307698581
ADN86666

Hit length
252 aa

E Value
2.75E-145

BLAST Score
519.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ADN86666

100% cov

Alignment Length
252 aa
Influenza A virus (A/pintail duck/Alberta/210/2002(H1N1))
Influenza A virus (A/pintail duck/Alberta/210/2002(H1N1))
Public DB hit
GI:78095954
ABB19629

Hit length
252 aa

E Value
2.89E-145

BLAST Score
519.2 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ABB19629

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Xinjiang/4/2007(H3N8))
Influenza A virus (A/equine/Xinjiang/4/2007(H3N8))
Public DB hit
GI:190683088
ACE81842

Hit length
252 aa

E Value
3.22E-145

BLAST Score
519.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 2

100% cov
ACE81842

100% cov

Alignment Length
252 aa

Occurrence

21 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

756

Sequence Type

nucleotide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481130
CY030174

Hit length
990 bp

E Value
0E0

BLAST Score
1,393.5 bits

Similarity

99.87%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030174

76.36% cov

Alignment Length
756 bp

CIGAR string
638MN117M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Public DB hit
GI:3414643
AF001680

Hit length
982 bp

E Value
0E0

BLAST Score
1,382.4 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AF001680

76.99% cov

Alignment Length
756 bp

CIGAR string
434MN203MN59MN57M mismatches: 3 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481149
CY030182

Hit length
990 bp

E Value
0E0

BLAST Score
1,376.9 bits

Similarity

99.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030182

76.36% cov

Alignment Length
756 bp

CIGAR string
185MN275MN107MN68MN117M mismatches: 4 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481054
CY030142

Hit length
985 bp

E Value
0E0

BLAST Score
1,376.9 bits

Similarity

99.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030142

76.75% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433605
CY018870

Hit length
991 bp

E Value
0E0

BLAST Score
1,376.9 bits

Similarity

99.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY018870

76.29% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269825457
GU052338

Hit length
1,002 bp

E Value
0E0

BLAST Score
1,371.3 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
GU052338

75.45% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504013
CY031539

Hit length
990 bp

E Value
0E0

BLAST Score
1,371.3 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY031539

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835061
CY030752

Hit length
989 bp

E Value
0E0

BLAST Score
1,371.3 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030752

76.44% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480959
CY030102

Hit length
990 bp

E Value
0E0

BLAST Score
1,371.3 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030102

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Public DB hit
GI:3414640
AF001679

Hit length
982 bp

E Value
0E0

BLAST Score
1,371.3 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AF001679

76.99% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193804992
CY032954

Hit length
985 bp

E Value
0E0

BLAST Score
1,365.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY032954

76.75% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481092
CY030158

Hit length
990 bp

E Value
0E0

BLAST Score
1,365.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030158

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481073
CY030150

Hit length
989 bp

E Value
0E0

BLAST Score
1,365.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030150

76.44% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481016
CY030126

Hit length
991 bp

E Value
0E0

BLAST Score
1,365.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030126

76.29% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168480997
CY030118

Hit length
990 bp

E Value
0E0

BLAST Score
1,365.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030118

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480978
CY030110

Hit length
990 bp

E Value
0E0

BLAST Score
1,365.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030110

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/eq/Kentucky/92(H3N8))
Influenza A virus (A/eq/Kentucky/92(H3N8))
Public DB hit
GI:3414652
AF001683

Hit length
982 bp

E Value
0E0

BLAST Score
1,365.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
AF001683

76.99% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481035
CY030134

Hit length
989 bp

E Value
0E0

BLAST Score
1,360.3 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030134

76.44% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480940
CY030094

Hit length
983 bp

E Value
0E0

BLAST Score
1,360.3 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY030094

76.91% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486673
FJ375234

Hit length
984 bp

E Value
0E0

BLAST Score
1,354.7 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
FJ375234

76.83% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:209486639
FJ375237

Hit length
984 bp

E Value
0E0

BLAST Score
1,354.7 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
FJ375237

76.83% cov

Alignment Length
756 bp
Influenza A Virus (A/equine/Italy/788/1/1991(H3N8))
Influenza A Virus (A/equine/Italy/788/1/1991(H3N8))
Public DB hit
GI:255965171
GQ404624

Hit length
991 bp

E Value
0E0

BLAST Score
1,354.7 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
GQ404624

76.29% cov

Alignment Length
756 bp
Influenza A Virus (A/equine/Brno/3/1989(H3N8))
Influenza A Virus (A/equine/Brno/3/1989(H3N8))
Public DB hit
GI:255965156
GQ404619

Hit length
991 bp

E Value
0E0

BLAST Score
1,354.7 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
GQ404619

76.29% cov

Alignment Length
756 bp
Influenza A Virus (A/equine/Suffolk/95839(H3N8))
Influenza A Virus (A/equine/Suffolk/95839(H3N8))
Public DB hit
GI:255965168
GQ404623

Hit length
991 bp

E Value
0E0

BLAST Score
1,354.7 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
GQ404623

76.29% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423065
CY032326

Hit length
990 bp

E Value
0E0

BLAST Score
1,354.7 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 3

100% cov
CY032326

76.36% cov

Alignment Length
756 bp

Occurrence

20 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

1,023

Sequence Type

nucleotide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:324317
M63529

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,823.8 bits

Similarity

98.83%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
M63529

99.61% cov

Alignment Length
1,023 bp

CIGAR string
66MN145MN218MN53MN35MN4MN123MN2MN20MN98MN111MN6MN130M mismatches: 12 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Public DB hit
GI:60547112
AY855344

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,823.8 bits

Similarity

98.83%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
AY855344

99.61% cov

Alignment Length
1,023 bp

CIGAR string
66MN119MN22MN164MN110MN40MN66MN11MN2MN125MN111MN38MN137M mismatches: 12 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269825457
GU052338

Hit length
1,002 bp

E Value
0E0

BLAST Score
1,812.7 bits

Similarity

99.3%

Coverage

97.95%

Alignment (schematic)

SEQ ID NO 4

97.95% cov
GU052338

100% cov

Alignment Length
1,002 bp

CIGAR string
11H55MN145MN218MN53MN40MN147MN210MN127M10H mismatches: 7 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481130
CY030174

Hit length
990 bp

E Value
0E0

BLAST Score
1,812.7 bits

Similarity

99.7%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 4

96.77% cov
CY030174

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Ohio/1/2003(H3N8))
Influenza A virus (A/equine/Ohio/1/2003(H3N8))
Public DB hit
GI:76443311
DQ124188

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,812.7 bits

Similarity

98.63%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
DQ124188

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/equine/Massachussetts/213/2003(H3N8))
Influenza A virus (A/equine/Massachussetts/213/2003(H3N8))
Public DB hit
GI:76443308
DQ124162

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,812.7 bits

Similarity

98.63%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
DQ124162

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/canine/Texas/1/2004(H3N8))
Influenza A virus (A/canine/Texas/1/2004(H3N8))
Public DB hit
GI:76443314
DQ124197

Hit length
1,026 bp

E Value
0E0

BLAST Score
1,807.1 bits

Similarity

98.63%

Coverage

99.71%

Alignment (schematic)

SEQ ID NO 4

99.71% cov
DQ124197

99.42% cov

Alignment Length
1,020 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433605
CY018870

Hit length
991 bp

E Value
0E0

BLAST Score
1,797.9 bits

Similarity

99.39%

Coverage

96.87%

Alignment (schematic)

SEQ ID NO 4

96.87% cov
CY018870

100% cov

Alignment Length
991 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481149
CY030182

Hit length
990 bp

E Value
0E0

BLAST Score
1,796.1 bits

Similarity

99.39%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 4

96.77% cov
CY030182

100% cov

Alignment Length
990 bp
Influenza A virus (A/swine/Chibi/01/2005(H3N8))
Influenza A virus (A/swine/Chibi/01/2005(H3N8))
Public DB hit
GI:202071770
FJ200429

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,790.5 bits

Similarity

98.24%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
FJ200429

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/swine/Anhui/01/2006(H3N8))
Influenza A virus (A/swine/Anhui/01/2006(H3N8))
Public DB hit
GI:202071751
FJ200421

Hit length
1,027 bp

E Value
0E0

BLAST Score
1,790.5 bits

Similarity

98.24%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
FJ200421

99.61% cov

Alignment Length
1,023 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504013
CY031539

Hit length
990 bp

E Value
0E0

BLAST Score
1,790.5 bits

Similarity

99.29%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 4

96.77% cov
CY031539

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480959
CY030102

Hit length
990 bp

E Value
0E0

BLAST Score
1,790.5 bits

Similarity

99.29%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 4

96.77% cov
CY030102

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481054
CY030142

Hit length
985 bp

E Value
0E0

BLAST Score
1,786.8 bits

Similarity

99.39%

Coverage

96.29%

Alignment (schematic)

SEQ ID NO 4

96.29% cov
CY030142

100% cov

Alignment Length
985 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481016
CY030126

Hit length
991 bp

E Value
0E0

BLAST Score
1,786.8 bits

Similarity

99.19%

Coverage

96.87%

Alignment (schematic)

SEQ ID NO 4

96.87% cov
CY030126

100% cov

Alignment Length
991 bp
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Public DB hit
GI:3414643
AF001680

Hit length
982 bp

E Value
0E0

BLAST Score
1,786.8 bits

Similarity

99.49%

Coverage

95.99%

Alignment (schematic)

SEQ ID NO 4

95.99% cov
AF001680

100% cov

Alignment Length
982 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481092
CY030158

Hit length
990 bp

E Value
0E0

BLAST Score
1,785 bits

Similarity

99.19%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 4

96.77% cov
CY030158

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168480997
CY030118

Hit length
990 bp

E Value
0E0

BLAST Score
1,785 bits

Similarity

99.19%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 4

96.77% cov
CY030118

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480978
CY030110

Hit length
990 bp

E Value
0E0

BLAST Score
1,785 bits

Similarity

99.19%

Coverage

96.77%

Alignment (schematic)

SEQ ID NO 4

96.77% cov
CY030110

100% cov

Alignment Length
990 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835061
CY030752

Hit length
989 bp

E Value
0E0

BLAST Score
1,783.1 bits

Similarity

99.19%

Coverage

96.68%

Alignment (schematic)

SEQ ID NO 4

96.68% cov
CY030752

100% cov

Alignment Length
989 bp
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481073
CY030150

Hit length
989 bp

E Value
0E0

BLAST Score
1,783.1 bits

Similarity

99.19%

Coverage

96.68%

Alignment (schematic)

SEQ ID NO 4

96.68% cov
CY030150

100% cov

Alignment Length
989 bp
Influenza A virus (A/equine/Tottori/1/07(H3N8))
Influenza A virus (A/equine/Tottori/1/07(H3N8))
Public DB hit
GI:327187713
AB591848

Hit length
1,045 bp

E Value
0E0

BLAST Score
1,779.4 bits

Similarity

98.04%

Coverage

100%

Alignment (schematic)

SEQ ID NO 4

100% cov
AB591848

97.89% cov

Alignment Length
1,023 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481035
CY030134

Hit length
989 bp

E Value
0E0

BLAST Score
1,777.6 bits

Similarity

99.09%

Coverage

96.68%

Alignment (schematic)

SEQ ID NO 4

96.68% cov
CY030134

100% cov

Alignment Length
989 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193804992
CY032954

Hit length
985 bp

E Value
0E0

BLAST Score
1,775.8 bits

Similarity

99.19%

Coverage

96.29%

Alignment (schematic)

SEQ ID NO 4

96.29% cov
CY032954

100% cov

Alignment Length
985 bp
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Public DB hit
GI:3414640
AF001679

Hit length
982 bp

E Value
0E0

BLAST Score
1,775.8 bits

Similarity

99.29%

Coverage

95.99%

Alignment (schematic)

SEQ ID NO 4

95.99% cov
AF001679

100% cov

Alignment Length
982 bp

Occurrence

20 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

252

Sequence Type

peptide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Public DB hit
GI:189230634
ACD85309

Hit length
252 aa

E Value
3.42E-146

BLAST Score
522.3 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACD85309

100% cov

Alignment Length
252 aa

CIGAR string
167MN84M mismatches: 1 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Public DB hit
GI:75557658
Q77ZK7

Hit length
252 aa

E Value
7.12E-146

BLAST Score
521.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
Q77ZK7

100% cov

Alignment Length
252 aa

CIGAR string
14MN152MN84M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/New York/1/1975(H3N8))
Influenza A virus (A/equine/New York/1/1975(H3N8))
Public DB hit
GI:168481440
ACA24917

Hit length
252 aa

E Value
8.34E-146

BLAST Score
521.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACA24917

100% cov

Alignment Length
252 aa

CIGAR string
167MN39MN44M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Cordoba/18/1985(H3N8))
Influenza A virus (A/equine/Cordoba/18/1985(H3N8))
Public DB hit
GI:189230577
ACD85276

Hit length
252 aa

E Value
1.13E-145

BLAST Score
520.4 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACD85276

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486674
ACI48800

Hit length
252 aa

E Value
1.19E-145

BLAST Score
520.4 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACI48800

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Florida/61156-2/2006(H3N8))
Influenza A virus (A/canine/Florida/61156-2/2006(H3N8))
Public DB hit
GI:304414780
ADM29576

Hit length
252 aa

E Value
1.43E-145

BLAST Score
520.4 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ADM29576

100% cov

Alignment Length
252 aa
Influenza A virus (A/eq/LaPlata/93(H3N8))
Influenza A virus (A/eq/LaPlata/93(H3N8))
Public DB hit
GI:3414659
AAC31294

Hit length
252 aa

E Value
1.67E-145

BLAST Score
520 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
AAC31294

100% cov

Alignment Length
252 aa
Influenza A virus (A/duck/Ukraine/1/1963(H3N8))
Influenza A virus (A/duck/Ukraine/1/1963(H3N8))
Public DB hit
GI:82654862
ABB88370

Hit length
252 aa

E Value
1.77E-145

BLAST Score
520 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ABB88370

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Xinjiang/3/2007(H3N8))
Influenza A virus (A/equine/Xinjiang/3/2007(H3N8))
Public DB hit
GI:190683107
ACE81853

Hit length
252 aa

E Value
1.78E-145

BLAST Score
520 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACE81853

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Florida/242/2003(H3N8))
Influenza A virus (A/canine/Florida/242/2003(H3N8))
Public DB hit
GI:76443306
ABA42435

Hit length
252 aa

E Value
1.81E-145

BLAST Score
520 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ABA42435

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/California/1/1980(H3N8))
Influenza A virus (A/equine/California/1/1980(H3N8))
Public DB hit
GI:166079488
ABY81460

Hit length
252 aa

E Value
2.09E-145

BLAST Score
519.6 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ABY81460

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Fontainebleau/1/1979(H3N8))
Influenza A virus (A/equine/Fontainebleau/1/1979(H3N8))
Public DB hit
GI:189230786
ACD85397

Hit length
252 aa

E Value
2.37E-145

BLAST Score
519.6 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACD85397

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/New York/115809/2005(H3N8))
Influenza A virus (A/canine/New York/115809/2005(H3N8))
Public DB hit
GI:304412951
ADM29246

Hit length
252 aa

E Value
2.55E-145

BLAST Score
519.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ADM29246

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/New York/5183-6/2006(H3N8))
Influenza A virus (A/canine/New York/5183-6/2006(H3N8))
Public DB hit
GI:304413808
ADM29323

Hit length
252 aa

E Value
2.73E-145

BLAST Score
519.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ADM29323

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Kentucky/4/1980(H3N8))
Influenza A virus (A/equine/Kentucky/4/1980(H3N8))
Public DB hit
GI:166079469
ABY81449

Hit length
252 aa

E Value
2.8E-145

BLAST Score
519.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ABY81449

100% cov

Alignment Length
252 aa
Influenza A virus (A/eq/Kentucky/92(H3N8))
Influenza A virus (A/eq/Kentucky/92(H3N8))
Public DB hit
GI:3414653
AAC31290

Hit length
252 aa

E Value
2.8E-145

BLAST Score
519.2 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
AAC31290

100% cov

Alignment Length
252 aa
Influenza A virus (A/chicken/California/905/01(H6N2))
Influenza A virus (A/chicken/California/905/01(H6N2))
Public DB hit
GI:21636378
AAM69960

Hit length
252 aa

E Value
3.45E-145

BLAST Score
518.8 bits

Similarity

100%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
AAM69960

100% cov

Alignment Length
252 aa
Influenza A Virus (A/equine/Brno/1/1995(H3N8))
Influenza A Virus (A/equine/Brno/1/1995(H3N8))
Public DB hit
GI:255965183
ACU44887

Hit length
252 aa

E Value
4.07E-145

BLAST Score
518.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACU44887

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Pennsylvania/137154/2008(H3N8))
Influenza A virus (A/canine/Pennsylvania/137154/2008(H3N8))
Public DB hit
GI:304415017
ADM29675

Hit length
252 aa

E Value
4.11E-145

BLAST Score
518.8 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ADM29675

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Kentucky/2/1980(H3N8))
Influenza A virus (A/equine/Kentucky/2/1980(H3N8))
Public DB hit
GI:193804955
ACF22116

Hit length
252 aa

E Value
4.21E-145

BLAST Score
518.8 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACF22116

100% cov

Alignment Length
252 aa
Influenza A virus (A/chicken/New York/4447-7/1994(H7N2NSA))
Influenza A virus (A/chicken/New York/4447-7/1994(H7N2NSA))
Public DB hit
GI:4584885
AAD25175

Hit length
252 aa

E Value
4.32E-145

BLAST Score
518.5 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
AAD25175

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/Florida/43/2004(H3N8))
Influenza A virus (A/canine/Florida/43/2004(H3N8))
Public DB hit
GI:76443303
ABA42433

Hit length
252 aa

E Value
4.81E-145

BLAST Score
518.5 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ABA42433

100% cov

Alignment Length
252 aa
Influenza A virus (A/canine/NY/dog2c10/2009(H3N8))
Influenza A virus (A/canine/NY/dog2c10/2009(H3N8))
Public DB hit
GI:307698581
ADN86666

Hit length
252 aa

E Value
4.97E-145

BLAST Score
518.5 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ADN86666

100% cov

Alignment Length
252 aa
Influenza A virus (A/equine/Xinjiang/4/2007(H3N8))
Influenza A virus (A/equine/Xinjiang/4/2007(H3N8))
Public DB hit
GI:190683088
ACE81842

Hit length
252 aa

E Value
4.97E-145

BLAST Score
518.5 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
ACE81842

100% cov

Alignment Length
252 aa
Influenza A virus (A/Chicken/Korea/99029/99(H9N2))
Influenza A virus (A/Chicken/Korea/99029/99(H9N2))
Public DB hit
GI:33318215
AAQ04981

Hit length
252 aa

E Value
5.06E-145

BLAST Score
518.5 bits

Similarity

99.6%

Coverage

100%

Alignment (schematic)

SEQ ID NO 5

100% cov
AAQ04981

100% cov

Alignment Length
252 aa

Occurrence

22 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

756

Sequence Type

nucleotide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481130
CY030174

Hit length
990 bp

E Value
0E0

BLAST Score
1,386.1 bits

Similarity

99.74%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030174

76.36% cov

Alignment Length
756 bp

CIGAR string
42MN459MN253M mismatches: 2 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Influenza A virus (A/equine/Arundel/12369/91(H3N8))
Public DB hit
GI:3414643
AF001680

Hit length
982 bp

E Value
0E0

BLAST Score
1,375 bits

Similarity

99.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
AF001680

76.99% cov

Alignment Length
756 bp

CIGAR string
42MN391MN67MN195MN57M mismatches: 4 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481149
CY030182

Hit length
990 bp

E Value
0E0

BLAST Score
1,369.5 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030182

76.36% cov

Alignment Length
756 bp

CIGAR string
42MN142MN275MN40MN66MN186M mismatches: 5 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481054
CY030142

Hit length
985 bp

E Value
0E0

BLAST Score
1,369.5 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030142

76.75% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433605
CY018870

Hit length
991 bp

E Value
0E0

BLAST Score
1,369.5 bits

Similarity

99.34%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY018870

76.29% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Influenza A virus (A/equine/Kentucky/211/1987(H3N8))
Public DB hit
GI:269825457
GU052338

Hit length
1,002 bp

E Value
0E0

BLAST Score
1,363.9 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
GU052338

75.45% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Influenza A virus (A/equine/Kentucky/2/1987(H3N8))
Public DB hit
GI:188504013
CY031539

Hit length
990 bp

E Value
0E0

BLAST Score
1,363.9 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY031539

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835061
CY030752

Hit length
989 bp

E Value
0E0

BLAST Score
1,363.9 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030752

76.44% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480959
CY030102

Hit length
990 bp

E Value
0E0

BLAST Score
1,363.9 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030102

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Influenza A virus (A/equine/Alaska/1/1991(H3N8))
Public DB hit
GI:3414640
AF001679

Hit length
982 bp

E Value
0E0

BLAST Score
1,363.9 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
AF001679

76.99% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193804992
CY032954

Hit length
985 bp

E Value
0E0

BLAST Score
1,358.4 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY032954

76.75% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481092
CY030158

Hit length
990 bp

E Value
0E0

BLAST Score
1,358.4 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030158

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481073
CY030150

Hit length
989 bp

E Value
0E0

BLAST Score
1,358.4 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030150

76.44% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481016
CY030126

Hit length
991 bp

E Value
0E0

BLAST Score
1,358.4 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030126

76.29% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168480997
CY030118

Hit length
990 bp

E Value
0E0

BLAST Score
1,358.4 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030118

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480978
CY030110

Hit length
990 bp

E Value
0E0

BLAST Score
1,358.4 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030110

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/eq/Kentucky/92(H3N8))
Influenza A virus (A/eq/Kentucky/92(H3N8))
Public DB hit
GI:3414652
AF001683

Hit length
982 bp

E Value
0E0

BLAST Score
1,358.4 bits

Similarity

99.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
AF001683

76.99% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Influenza A virus (A/equine/Italy/1199/1992(H3N8))
Public DB hit
GI:189230633
CY032342

Hit length
990 bp

E Value
0E0

BLAST Score
1,352.9 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY032342

76.36% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481035
CY030134

Hit length
989 bp

E Value
0E0

BLAST Score
1,352.9 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030134

76.44% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480940
CY030094

Hit length
983 bp

E Value
0E0

BLAST Score
1,352.9 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
CY030094

76.91% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Influenza A virus (A/equine/Newmarket/1/1993(H3N8))
Public DB hit
GI:209486673
FJ375234

Hit length
984 bp

E Value
0E0

BLAST Score
1,347.3 bits

Similarity

98.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
FJ375234

76.83% cov

Alignment Length
756 bp
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:209486639
FJ375237

Hit length
984 bp

E Value
0E0

BLAST Score
1,347.3 bits

Similarity

98.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
FJ375237

76.83% cov

Alignment Length
756 bp
Influenza A Virus (A/equine/Italy/788/1/1991(H3N8))
Influenza A Virus (A/equine/Italy/788/1/1991(H3N8))
Public DB hit
GI:255965171
GQ404624

Hit length
991 bp

E Value
0E0

BLAST Score
1,347.3 bits

Similarity

98.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
GQ404624

76.29% cov

Alignment Length
756 bp
Influenza A Virus (A/equine/Brno/3/1989(H3N8))
Influenza A Virus (A/equine/Brno/3/1989(H3N8))
Public DB hit
GI:255965156
GQ404619

Hit length
991 bp

E Value
0E0

BLAST Score
1,347.3 bits

Similarity

98.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
GQ404619

76.29% cov

Alignment Length
756 bp
Influenza A Virus (A/equine/Suffolk/95839(H3N8))
Influenza A Virus (A/equine/Suffolk/95839(H3N8))
Public DB hit
GI:255965168
GQ404623

Hit length
991 bp

E Value
0E0

BLAST Score
1,347.3 bits

Similarity

98.81%

Coverage

100%

Alignment (schematic)

SEQ ID NO 6

100% cov
GQ404623

76.29% cov

Alignment Length
756 bp

Occurrence

20 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

1,762

Sequence Type

nucleotide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:722411
L39918
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/1/1991(H3N8)).

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,210.6 bits

Similarity

99.55%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
L39918

100% cov

Alignment Length
1,762 bp

CIGAR string
54MN484MN98MN31MN66MN550MN8MN69MN394M mismatches: 8 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Florida/1/93(H3N8))
Influenza A virus (A/equine/Florida/1/93(H3N8))
Public DB hit
GI:722407
L39916

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,177.4 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
L39916

100% cov

Alignment Length
1,762 bp

CIGAR string
54MN305MN124MN53MN98MN31MN66MN200MN265MN83MN78MN112MN89MN63MN127M mismatches: 14 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Public DB hit
GI:1200094
X95638

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,168.1 bits

Similarity

99.31%

Coverage

99.38%

Alignment (schematic)

SEQ ID NO 7

99.38% cov
X95638

99.38% cov

Alignment Length
1,751 bp

CIGAR string
11H43MN27MN587MN66MN85MN140MN202MN102MN17MN32MN45MN112MN281M mismatches: 12 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Public DB hit
GI:722401
L39913

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,166.3 bits

Similarity

99.09%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
L39913

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Public DB hit
GI:722403
L39914

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,160.7 bits

Similarity

99.04%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
L39914

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Public DB hit
GI:722405
L39915

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,127.5 bits

Similarity

98.69%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
L39915

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481052
CY030141

Hit length
1,725 bp

E Value
0E0

BLAST Score
3,120.1 bits

Similarity

99.3%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 7

97.9% cov
CY030141

100% cov

Alignment Length
1,725 bp
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:722409
L39917
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/1/1992(H3N8)).

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,116.4 bits

Similarity

98.58%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
L39917

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Public DB hit
GI:1262348
X95637

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,105.3 bits

Similarity

98.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
X95637

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433603
CY018869

Hit length
1,728 bp

E Value
0E0

BLAST Score
3,103.5 bits

Similarity

99.07%

Coverage

98.07%

Alignment (schematic)

SEQ ID NO 7

98.07% cov
CY018869

100% cov

Alignment Length
1,728 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481090
CY030157

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,101.6 bits

Similarity

99.24%

Coverage

97.5%

Alignment (schematic)

SEQ ID NO 7

97.5% cov
CY030157

100% cov

Alignment Length
1,718 bp
Influenza A virus (A/equine/Tennessee/5/1985(H3N8))
Influenza A virus (A/equine/Tennessee/5/1985(H3N8))
Public DB hit
GI:324020
M24726

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,085 bits

Similarity

98.24%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
M24726

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481014
CY030125

Hit length
1,723 bp

E Value
0E0

BLAST Score
3,077.6 bits

Similarity

98.9%

Coverage

97.79%

Alignment (schematic)

SEQ ID NO 7

97.79% cov
CY030125

100% cov

Alignment Length
1,723 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481033
CY030133

Hit length
1,725 bp

E Value
0E0

BLAST Score
3,075.8 bits

Similarity

98.84%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 7

97.9% cov
CY030133

100% cov

Alignment Length
1,725 bp
Influenza A virus (A/equine/Suffolk/89(H3N8))
Influenza A virus (A/equine/Suffolk/89(H3N8))
Public DB hit
GI:312668
X68437

Hit length
1,742 bp

E Value
0E0

BLAST Score
3,073.9 bits

Similarity

98.51%

Coverage

98.86%

Alignment (schematic)

SEQ ID NO 7

98.86% cov
X68437

100% cov

Alignment Length
1,742 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168480995
CY030117

Hit length
1,723 bp

E Value
0E0

BLAST Score
3,072.1 bits

Similarity

98.84%

Coverage

97.79%

Alignment (schematic)

SEQ ID NO 7

97.79% cov
CY030117

100% cov

Alignment Length
1,723 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480976
CY030109

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,068.4 bits

Similarity

98.89%

Coverage

97.5%

Alignment (schematic)

SEQ ID NO 7

97.5% cov
CY030109

100% cov

Alignment Length
1,718 bp
Influenza A Virus (A/equine/Hong Kong/J/1992(H3N8))
Influenza A Virus (A/equine/Hong Kong/J/1992(H3N8))
Public DB hit
GI:461383
L27597

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,061 bits

Similarity

98.01%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
L27597

100% cov

Alignment Length
1,763 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481147
CY030181

Hit length
1,722 bp

E Value
0E0

BLAST Score
3,059.2 bits

Similarity

98.72%

Coverage

97.73%

Alignment (schematic)

SEQ ID NO 7

97.73% cov
CY030181

100% cov

Alignment Length
1,722 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:324002
M24728

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,051.8 bits

Similarity

97.9%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
M24728

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423063
CY032325

Hit length
1,726 bp

E Value
0E0

BLAST Score
3,049.9 bits

Similarity

98.55%

Coverage

97.96%

Alignment (schematic)

SEQ ID NO 7

97.96% cov
CY032325

100% cov

Alignment Length
1,726 bp
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Public DB hit
GI:60547106
AY855341

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,033.3 bits

Similarity

97.73%

Coverage

100%

Alignment (schematic)

SEQ ID NO 7

100% cov
AY855341

100% cov

Alignment Length
1,763 bp
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230802
CY032413

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,029.6 bits

Similarity

98.49%

Coverage

97.5%

Alignment (schematic)

SEQ ID NO 7

97.5% cov
CY032413

100% cov

Alignment Length
1,718 bp

Occurrence

20 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

565

Sequence Type

peptide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Public DB hit
GI:1200095
CAA64894

Hit length
565 aa

E Value
0E0

BLAST Score
1,167.1 bits

Similarity

99.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
CAA64894

100% cov

Alignment Length
565 aa

CIGAR string
8MN227MN142MN66MN118M mismatches: 4 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:722412
AAB36980

Hit length
565 aa

E Value
0E0

BLAST Score
1,165.6 bits

Similarity

99.65%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAB36980

100% cov

Alignment Length
565 aa

CIGAR string
8MN161MN32MN32MN209MN118M mismatches: 5 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481091
ACA24645

Hit length
565 aa

E Value
0E0

BLAST Score
1,164.8 bits

Similarity

99.65%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA24645

100% cov

Alignment Length
565 aa

CIGAR string
8MN101MN41MN17MN36MN28MN209MN118M mismatches: 7 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481053
ACA24623

Hit length
565 aa

E Value
0E0

BLAST Score
1,162.5 bits

Similarity

99.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA24623

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Public DB hit
GI:722404
AAB36976

Hit length
565 aa

E Value
0E0

BLAST Score
1,161 bits

Similarity

99.65%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAB36976

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480977
ACA24579

Hit length
565 aa

E Value
0E0

BLAST Score
1,160.2 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA24579

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Public DB hit
GI:722402
AAB36975

Hit length
565 aa

E Value
0E0

BLAST Score
1,160.2 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAB36975

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433604
ABM21938

Hit length
565 aa

E Value
0E0

BLAST Score
1,159.4 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ABM21938

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:722410
AAB36979

Hit length
565 aa

E Value
0E0

BLAST Score
1,159.1 bits

Similarity

99.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAB36979

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Florida/1/93(H3N8))
Influenza A virus (A/equine/Florida/1/93(H3N8))
Public DB hit
GI:722408
AAB36978

Hit length
565 aa

E Value
0E0

BLAST Score
1,158.7 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAB36978

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835060
ACA96800

Hit length
565 aa

E Value
0E0

BLAST Score
1,157.9 bits

Similarity

99.65%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA96800

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481110
ACA24656
1 of 2 hits reported for Influenza A virus (A/equine/Tennessee/5/1986(H3N8)).

Hit length
565 aa

E Value
0E0

BLAST Score
1,157.9 bits

Similarity

99.12%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA24656

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:168480958
ACA24568
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/1/1987(H3N8)).

Hit length
565 aa

E Value
0E0

BLAST Score
1,156.4 bits

Similarity

99.12%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA24568

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/3/1986(H3N8))
Influenza A virus (A/equine/Kentucky/3/1986(H3N8))
Public DB hit
GI:189230404
ACD85176

Hit length
565 aa

E Value
0E0

BLAST Score
1,155.6 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACD85176

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Influenza A virus (A/equine/Kentucky/1/1986(H3N8))
Public DB hit
GI:168480939
ACA24557

Hit length
565 aa

E Value
0E0

BLAST Score
1,155.2 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA24557

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Suffolk/89(H3N8))
Influenza A virus (A/equine/Suffolk/89(H3N8))
Public DB hit
GI:1170228
Q08011

Hit length
565 aa

E Value
0E0

BLAST Score
1,155.2 bits

Similarity

99.12%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
Q08011

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481148
ACA24678

Hit length
565 aa

E Value
0E0

BLAST Score
1,154.8 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACA24678

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230803
ACD85407

Hit length
565 aa

E Value
0E0

BLAST Score
1,154.4 bits

Similarity

99.12%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ACD85407

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Public DB hit
GI:722406
AAB36977

Hit length
565 aa

E Value
0E0

BLAST Score
1,154 bits

Similarity

99.12%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAB36977

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Tennessee/5/1985(H3N8))
Influenza A virus (A/equine/Tennessee/5/1985(H3N8))
Public DB hit
GI:324021
AAA43112

Hit length
565 aa

E Value
0E0

BLAST Score
1,154 bits

Similarity

98.76%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAA43112

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Public DB hit
GI:1262349
CAA64893

Hit length
565 aa

E Value
0E0

BLAST Score
1,153.7 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
CAA64893

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Public DB hit
GI:60547107
AAX23575

Hit length
565 aa

E Value
0E0

BLAST Score
1,153.7 bits

Similarity

99.12%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
AAX23575

100% cov

Alignment Length
565 aa
Influenza A virus (A/equine/Georgia/1/1981(H3N8))
Influenza A virus (A/equine/Georgia/1/1981(H3N8))
Public DB hit
GI:166079600
ABY81525

Hit length
565 aa

E Value
0E0

BLAST Score
1,152.9 bits

Similarity

98.94%

Coverage

100%

Alignment (schematic)

SEQ ID NO 8

100% cov
ABY81525

100% cov

Alignment Length
565 aa

Occurrence

22 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

1,695

Sequence Type

nucleotide

Locations

Claims, Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:168481128
CY030173
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/1/1991(H3N8)).

Hit length
1,723 bp

E Value
0E0

BLAST Score
3,092.4 bits

Similarity

99.59%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030173

98.37% cov

Alignment Length
1,695 bp

CIGAR string
25MN484MN98MN31MN66MN550MN78MN356M mismatches: 7 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481052
CY030141

Hit length
1,725 bp

E Value
0E0

BLAST Score
3,064.7 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030141

98.26% cov

Alignment Length
1,695 bp

CIGAR string
25MN295MN9MN124MN53MN130MN66MN466MN83MN78MN112MN89MN153M mismatches: 12 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Public DB hit
GI:1200094
X95638

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,064.7 bits

Similarity

99.29%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
X95638

96.2% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481090
CY030157

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,059.2 bits

Similarity

99.23%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030157

98.66% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Florida/1/93(H3N8))
Influenza A virus (A/equine/Florida/1/93(H3N8))
Public DB hit
GI:722407
L39916

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,053.6 bits

Similarity

99.17%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
L39916

96.2% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433603
CY018869

Hit length
1,728 bp

E Value
0E0

BLAST Score
3,042.6 bits

Similarity

99.06%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY018869

98.09% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Public DB hit
GI:722401
L39913

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,042.6 bits

Similarity

99.06%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
L39913

96.2% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Public DB hit
GI:722403
L39914

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,037 bits

Similarity

99%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
L39914

96.2% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481014
CY030125

Hit length
1,723 bp

E Value
0E0

BLAST Score
3,025.9 bits

Similarity

98.88%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030125

98.37% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480976
CY030109

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,025.9 bits

Similarity

98.88%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030109

98.66% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481033
CY030133

Hit length
1,725 bp

E Value
0E0

BLAST Score
3,020.4 bits

Similarity

98.82%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030133

98.26% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168480995
CY030117

Hit length
1,723 bp

E Value
0E0

BLAST Score
3,020.4 bits

Similarity

98.82%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030117

98.37% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481147
CY030181

Hit length
1,722 bp

E Value
0E0

BLAST Score
3,009.3 bits

Similarity

98.7%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030181

98.43% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Public DB hit
GI:722405
L39915

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,003.8 bits

Similarity

98.64%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
L39915

96.2% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423063
CY032325

Hit length
1,726 bp

E Value
0E0

BLAST Score
2,992.7 bits

Similarity

98.53%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY032325

98.2% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/California/4537/1997(H3N8))
Influenza A virus (A/equine/California/4537/1997(H3N8))
Public DB hit
GI:169835059
CY030751

Hit length
1,714 bp

E Value
0E0

BLAST Score
2,992.7 bits

Similarity

98.53%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030751

98.89% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:168481071
CY030149
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/1/1992(H3N8)).

Hit length
1,715 bp

E Value
0E0

BLAST Score
2,992.7 bits

Similarity

98.53%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030149

98.83% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230802
CY032413

Hit length
1,718 bp

E Value
0E0

BLAST Score
2,987.2 bits

Similarity

98.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY032413

98.66% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Suffolk/89(H3N8))
Influenza A virus (A/equine/Suffolk/89(H3N8))
Public DB hit
GI:312668
X68437

Hit length
1,742 bp

E Value
0E0

BLAST Score
2,987.2 bits

Similarity

98.47%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
X68437

97.3% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Influenza A virus (A/equine/Sussex/1/1989(H3N8))
Public DB hit
GI:189423044
CY032317

Hit length
1,717 bp

E Value
0E0

BLAST Score
2,981.6 bits

Similarity

98.41%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY032317

98.72% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Influenza A virus (A/equine/Tennessee/5/1986(H3N8))
Public DB hit
GI:168481109
CY030165

Hit length
1,717 bp

E Value
0E0

BLAST Score
2,981.6 bits

Similarity

98.41%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY030165

98.72% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Public DB hit
GI:1262348
X95637

Hit length
1,762 bp

E Value
0E0

BLAST Score
2,981.6 bits

Similarity

98.41%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
X95637

96.2% cov

Alignment Length
1,695 bp
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Influenza A virus (A/equine/Johannesburg/1/1986(H3N8))
Public DB hit
GI:193804990
CY032953

Hit length
1,715 bp

E Value
0E0

BLAST Score
2,976.1 bits

Similarity

98.35%

Coverage

100%

Alignment (schematic)

SEQ ID NO 9

100% cov
CY032953

98.83% cov

Alignment Length
1,695 bp

Occurrence

20 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

SEQ ID NO

Length

1,762

Sequence Type

nucleotide

Locations

Detailed Description

Declared organism

Equine influenza virus H3N8

Determined organism

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Influenza A virus (A/equine/Kentucky/1/1991(H3N8))
Public DB hit
GI:722411
L39918
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/1/1991(H3N8)).

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,227.2 bits

Similarity

99.72%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
L39918

100% cov

Alignment Length
1,762 bp

CIGAR string
498MN40MN98MN165MN492MN464M mismatches: 5 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Florida/1/93(H3N8))
Influenza A virus (A/equine/Florida/1/93(H3N8))
Public DB hit
GI:722407
L39916

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,194 bits

Similarity

99.38%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
L39916

100% cov

Alignment Length
1,762 bp

CIGAR string
360MN124MN12MN40MN98MN165MN133MN265MN275MN89MN63MN127M mismatches: 11 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Influenza A virus (A/equine/Ibadan/9/91(H3N8))
Public DB hit
GI:1200094
X95638

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,184.7 bits

Similarity

99.49%

Coverage

99.38%

Alignment (schematic)

SEQ ID NO 10

99.38% cov
X95638

99.38% cov

Alignment Length
1,751 bp

CIGAR string
11H71MN415MN305MN18MN140MN202MN102MN50MN158MN281M mismatches: 9 - insertions: 0 - deletions: 0
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Influenza A virus (A/equine/Argentina/1/93(H3N8))
Public DB hit
GI:722401
L39913

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,182.9 bits

Similarity

99.26%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
L39913

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Influenza A virus (A/equine/Kentucky/1/1994(H3N8))
Public DB hit
GI:722403
L39914

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,177.4 bits

Similarity

99.21%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
L39914

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1/1990(H3N8))
Public DB hit
GI:722405
L39915

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,144.1 bits

Similarity

98.87%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
L39915

100% cov

Alignment Length
1,763 bp
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Influenza A virus (A/equine/Texas/39655/1991(H3N8))
Public DB hit
GI:168481052
CY030141

Hit length
1,725 bp

E Value
0E0

BLAST Score
3,136.7 bits

Similarity

99.48%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 10

97.9% cov
CY030141

100% cov

Alignment Length
1,725 bp
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Public DB hit
GI:722409
L39917
1 of 2 hits reported for Influenza A virus (A/equine/Kentucky/1/1992(H3N8)).

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,133 bits

Similarity

98.75%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
L39917

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Influenza A virus (A/equine/Ibadan/6/91(H3N8))
Public DB hit
GI:1262348
X95637

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,122 bits

Similarity

98.64%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
X95637

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Influenza A virus (A/equine/Idaho/37875/1991(H3N8))
Public DB hit
GI:120433603
CY018869

Hit length
1,728 bp

E Value
0E0

BLAST Score
3,120.1 bits

Similarity

99.25%

Coverage

98.07%

Alignment (schematic)

SEQ ID NO 10

98.07% cov
CY018869

100% cov

Alignment Length
1,728 bp
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Influenza A virus (A/equine/Alaska/29759/1991(H3N8))
Public DB hit
GI:168481090
CY030157

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,118.3 bits

Similarity

99.42%

Coverage

97.5%

Alignment (schematic)

SEQ ID NO 10

97.5% cov
CY030157

100% cov

Alignment Length
1,718 bp
Influenza A virus (A/equine/Suffolk/89(H3N8))
Influenza A virus (A/equine/Suffolk/89(H3N8))
Public DB hit
GI:312668
X68437

Hit length
1,742 bp

E Value
0E0

BLAST Score
3,101.6 bits

Similarity

98.79%

Coverage

98.86%

Alignment (schematic)

SEQ ID NO 10

98.86% cov
X68437

100% cov

Alignment Length
1,742 bp
Influenza A virus (A/equine/Tennessee/5/1985(H3N8))
Influenza A virus (A/equine/Tennessee/5/1985(H3N8))
Public DB hit
GI:324020
M24726

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,101.6 bits

Similarity

98.41%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
M24726

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Influenza A virus (A/equine/Kentucky/698/1988(H3N8))
Public DB hit
GI:168481014
CY030125

Hit length
1,723 bp

E Value
0E0

BLAST Score
3,094.3 bits

Similarity

99.07%

Coverage

97.79%

Alignment (schematic)

SEQ ID NO 10

97.79% cov
CY030125

100% cov

Alignment Length
1,723 bp
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Influenza A virus (A/equine/Kentucky/1277/1990(H3N8))
Public DB hit
GI:168481033
CY030133

Hit length
1,725 bp

E Value
0E0

BLAST Score
3,092.4 bits

Similarity

99.02%

Coverage

97.9%

Alignment (schematic)

SEQ ID NO 10

97.9% cov
CY030133

100% cov

Alignment Length
1,726 bp
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Influenza A virus (A/equine/Kentucky/694/1988(H3N8))
Public DB hit
GI:168480995
CY030117

Hit length
1,723 bp

E Value
0E0

BLAST Score
3,088.7 bits

Similarity

99.01%

Coverage

97.79%

Alignment (schematic)

SEQ ID NO 10

97.79% cov
CY030117

100% cov

Alignment Length
1,723 bp
Influenza A Virus (A/equine/Hong Kong/J/1992(H3N8))
Influenza A Virus (A/equine/Hong Kong/J/1992(H3N8))
Public DB hit
GI:461383
L27597

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,088.7 bits

Similarity

98.3%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
L27597

100% cov

Alignment Length
1,763 bp
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Influenza A virus (A/equine/Kentucky/692/1988(H3N8))
Public DB hit
GI:168480976
CY030109

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,085 bits

Similarity

99.07%

Coverage

97.5%

Alignment (schematic)

SEQ ID NO 10

97.5% cov
CY030109

100% cov

Alignment Length
1,718 bp
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Influenza A virus (A/equine/Rook/93753/1989(H3N8))
Public DB hit
GI:189423063
CY032325

Hit length
1,726 bp

E Value
0E0

BLAST Score
3,077.6 bits

Similarity

98.84%

Coverage

97.96%

Alignment (schematic)

SEQ ID NO 10

97.96% cov
CY032325

100% cov

Alignment Length
1,726 bp
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Influenza A virus (A/equine/Kentucky/8/1994(H3N8))
Public DB hit
GI:168481147
CY030181

Hit length
1,722 bp

E Value
0E0

BLAST Score
3,075.8 bits

Similarity

98.9%

Coverage

97.73%

Alignment (schematic)

SEQ ID NO 10

97.73% cov
CY030181

100% cov

Alignment Length
1,722 bp
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Influenza A virus (A/equine/Kentucky/1/1987(H3N8))
Public DB hit
GI:324002
M24728

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,068.4 bits

Similarity

98.07%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
M24728

100% cov

Alignment Length
1,762 bp
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Influenza A virus (A/equine/Kentucky/5/2002(H3N8))
Public DB hit
GI:60547106
AY855341

Hit length
1,762 bp

E Value
0E0

BLAST Score
3,049.9 bits

Similarity

97.9%

Coverage

100%

Alignment (schematic)

SEQ ID NO 10

100% cov
AY855341

100% cov

Alignment Length
1,763 bp
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Influenza A virus (A/equine/Berlin/1/1989(H3N8))
Public DB hit
GI:189230802
CY032413

Hit length
1,718 bp

E Value
0E0

BLAST Score
3,046.2 bits

Similarity

98.66%

Coverage

97.5%

Alignment (schematic)

SEQ ID NO 10

97.5% cov
CY032413

100% cov

Alignment Length
1,718 bp

Occurrence

20 times in PatSeqDB

in 2 extended families
(2 referenced in claims)
in 3 simple families
(3 referenced in claims)
in 20 documents

Tools

43 sequences found in this patent (in total)

Filter sequences

Displaying 1 - 10 of 43 sequences

Influenza A virus (A/equine/Tennessee/5/1986(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Influenza A virus (A/equine/Kentucky/5/2002(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Influenza A virus (A/equine/Kentucky/211/1987(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

CIGAR string

Influenza A virus (A/equine/Kentucky/1/1991(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Influenza A virus (A/equine/Ohio/1/2003(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Influenza A virus (A/equine/Massachussetts/213/2003(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Influenza A virus (A/canine/Texas/1/2004(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Influenza A virus (A/equine/Idaho/37875/1991(H3N8))

Public DB hit

Hit length

E Value

BLAST Score

Similarity

Coverage

Alignment (schematic)

Alignment Length

Influenza A virus (A/equine/Kentucky/8/1994(H3N8))

Public DB hit