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Search for Biological Sequences disclosed in Patents

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Data obtained from: WIPO-PCT
55 sequences found in this patent (in total)

Displaying 1 - 10 of 55 sequences

SEQ ID NO
Length
Type
Locations
Organisms
Occurrence
Tools
SEQ ID NO
1
Length
8
Type
peptide
Locations
Claims, Fulltext

Declared organism:
Artificial

Determined organism:
  • Escherichia coli O157:H7 str. EC4024

    Escherichia coli O157:H7 str. EC4024

    • Public DB hit
      GI:195939312
      ZP_03084694
    • Hit length
      35 aa
    • E Value
      6.86E0
    • BLAST Score
      29.5 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ZP_03084694
      22.86% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 3.3884

    Escherichia coli 3.3884

    • Public DB hit
      GI:386232032
      EII59379
      1 of 2 hits reported for Escherichia coli 3.3884.
    • Hit length
      247 aa
    • E Value
      8.6E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EII59379
      3.24% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EC4076

    Escherichia coli O157:H7 str. EC4076

    • Public DB hit
      GI:168784105
      ZP_02809112
      1 of 4 hits reported for Escherichia coli O157:H7 str. EC4076.
    • Hit length
      260 aa
    • E Value
      8.64E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ZP_02809112
      3.08% cov
    • Alignment Length
      8 aa
    • CIGAR string
      8M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli 4.0522

    Escherichia coli 4.0522

    • Public DB hit
      GI:386192311
      EIH81040
    • Hit length
      260 aa
    • E Value
      8.64E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EIH81040
      3.08% cov
    • Alignment Length
      8 aa
  • Escherichia coli STEC_B2F1

    Escherichia coli STEC_B2F1

    • Public DB hit
      GI:345341745
      EGW74147
    • Hit length
      260 aa
    • E Value
      8.64E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EGW74147
      3.08% cov
    • Alignment Length
      8 aa
  • Escherichia coli PA10

    Escherichia coli PA10

    • Public DB hit
      GI:390699928
      EIN74266
    • Hit length
      313 aa
    • E Value
      8.79E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EIN74266
      2.56% cov
    • Alignment Length
      8 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:148750802
      ABR10024
      1 of 7 hits reported for Escherichia coli.
    • Hit length
      317 aa
    • E Value
      8.79E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ABR10024
      2.52% cov
    • Alignment Length
      8 aa
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:260868443
      YP_003234845
    • Hit length
      319 aa
    • E Value
      8.8E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      YP_003234845
      2.51% cov
    • Alignment Length
      8 aa
  • Escherichia coli O157:H7 str. EC4401

    Escherichia coli O157:H7 str. EC4401

    • Public DB hit
      GI:168755149
      ZP_02780156
    • Hit length
      319 aa
    • E Value
      8.8E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      ZP_02780156
      2.51% cov
    • Alignment Length
      8 aa
  • Enterobacteria phage phiP27

    Enterobacteria phage phiP27

    • Public DB hit
      GI:18249889
      NP_543077
    • Hit length
      319 aa
    • E Value
      8.8E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_543077
      2.51% cov
    • Alignment Length
      8 aa
  • Enterobacteria phage 933W

    Enterobacteria phage 933W

    • Public DB hit
      GI:9632506
      NP_049500
    • Hit length
      319 aa
    • E Value
      8.8E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NP_049500
      2.51% cov
    • Alignment Length
      8 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:381389709
      AFG26683
    • Hit length
      319 aa
    • E Value
      8.8E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AFG26683
      2.51% cov
    • Alignment Length
      8 aa
  • Enterobacteria phage L34

    Enterobacteria phage L34

    • Public DB hit
      GI:353441860
      AER00222
    • Hit length
      319 aa
    • E Value
      8.8E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AER00222
      2.51% cov
    • Alignment Length
      8 aa
  • Escherichia coli STEC_DG131-3

    Escherichia coli STEC_DG131-3

    • Public DB hit
      GI:345361009
      EGW93172
    • Hit length
      319 aa
    • E Value
      8.8E0
    • BLAST Score
      29.9 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      EGW93172
      2.51% cov
    • Alignment Length
      8 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
2
Length
5
Type
peptide
Locations
Claims, Fulltext

Declared organism:
Artificial

Determined organism:
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
3
Length
16
Type
peptide
Locations
Claims, Fulltext

Declared organism:
Artificial

Determined organism:
  • Escherichia coli 4.0522

    Escherichia coli 4.0522

    • Public DB hit
      GI:386192463
      EIH81188
    • Hit length
      78 aa
    • E Value
      7.68E-2
    • BLAST Score
      34.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EIH81188
      20.51% cov
    • Alignment Length
      16 aa
    • CIGAR string
      16M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli PA3

    Escherichia coli PA3

    • Public DB hit
      GI:390677493
      EIN53524
    • Hit length
      63 aa
    • E Value
      8.42E-2
    • BLAST Score
      34.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EIN53524
      25.4% cov
    • Alignment Length
      16 aa
    • CIGAR string
      16M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli STEC_B2F1

    Escherichia coli STEC_B2F1

    • Public DB hit
      GI:345341746
      EGW74148
    • Hit length
      63 aa
    • E Value
      9.29E-2
    • BLAST Score
      34.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EGW74148
      25.4% cov
    • Alignment Length
      16 aa
    • CIGAR string
      16M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli EC4448

    Escherichia coli EC4448

    • Public DB hit
      GI:390895858
      EIP55273
    • Hit length
      93 aa
    • E Value
      1.08E-1
    • BLAST Score
      34.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EIP55273
      17.2% cov
    • Alignment Length
      16 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:300373175
      ADK02660
      1 of 14 hits reported for Escherichia coli.
    • Hit length
      85 aa
    • E Value
      1.15E-1
    • BLAST Score
      34.3 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ADK02660
      18.82% cov
    • Alignment Length
      16 aa
  • Aeromonas caviae

    Aeromonas caviae

    • Public DB hit
      GI:307938405
      ADN95594
    • Hit length
      135 aa
    • E Value
      1.76E-1
    • BLAST Score
      34.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ADN95594
      11.85% cov
    • Alignment Length
      16 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:395455495
      AFN62170
    • Hit length
      186 aa
    • E Value
      2.65E-1
    • BLAST Score
      34.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AFN62170
      8.6% cov
    • Alignment Length
      16 aa
  • Escherichia coli O157:H7 str. EC4076

    Escherichia coli O157:H7 str. EC4076

    • Public DB hit
      GI:168780254
      ZP_02805261
    • Hit length
      260 aa
    • E Value
      2.9E-1
    • BLAST Score
      35 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ZP_02805261
      6.15% cov
    • Alignment Length
      16 aa
  • Enterobacter cloacae

    Enterobacter cloacae

    • Public DB hit
      GI:944825
      CAA90630
    • Hit length
      319 aa
    • E Value
      2.94E-1
    • BLAST Score
      35.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CAA90630
      5.02% cov
    • Alignment Length
      16 aa
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:260868443
      YP_003234845
    • Hit length
      319 aa
    • E Value
      3E-1
    • BLAST Score
      35.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      YP_003234845
      5.02% cov
    • Alignment Length
      16 aa
  • Acinetobacter haemolyticus

    Acinetobacter haemolyticus

    • Public DB hit
      GI:118192169
      ABC67318
    • Hit length
      319 aa
    • E Value
      3E-1
    • BLAST Score
      35.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      ABC67318
      5.02% cov
    • Alignment Length
      16 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
4
Length
315
Type
peptide
Locations
Fulltext

Declared organism:
Artificial

Determined organism:
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:134536
      P08026
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      617.8 bits
    • Similarity
      98.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      P08026
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N244M mismatches: 8 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:9955819
      CAC05622
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      617.8 bits
    • Similarity
      98.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAC05622
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N244M mismatches: 8 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802646
      NP_288673
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      617.8 bits
    • Similarity
      98.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_288673
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N244M mismatches: 8 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:260854747
      YP_003228638
    • Hit length
      318 aa
    • E Value
      0E0
    • BLAST Score
      617.8 bits
    • Similarity
      98.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_003228638
      99.06% cov
    • Alignment Length
      315 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:535055
      CAA85368
      1 of 11 hits reported for Escherichia coli.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      615.5 bits
    • Similarity
      97.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAA85368
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400299
      BAC78637
      1 of 2 hits reported for Escherichia coli O157:H7.
    • Hit length
      313 aa
    • E Value
      0E0
    • BLAST Score
      615.2 bits
    • Similarity
      98.08%
    • Coverage
      99.37%
    • Alignment (schematic)

      SEQ ID NO 4
      99.37% cov
      BAC78637
      100% cov
    • Alignment Length
      313 aa
  • Escherichia coli 99.0741

    Escherichia coli 99.0741

    • Public DB hit
      GI:386172515
      EIH44542
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      615.2 bits
    • Similarity
      97.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EIH44542
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O111:NM

    Escherichia coli O111:NM

    • Public DB hit
      GI:108743114
      CAJ76690
      1 of 2 hits reported for Escherichia coli O111:NM.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      613.2 bits
    • Similarity
      97.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CAJ76690
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 93-001

    Escherichia coli 93-001

    • Public DB hit
      GI:390660382
      EIN38089
    • Hit length
      308 aa
    • E Value
      0E0
    • BLAST Score
      602.4 bits
    • Similarity
      98.05%
    • Coverage
      97.78%
    • Alignment (schematic)

      SEQ ID NO 4
      97.78% cov
      EIN38089
      100% cov
    • Alignment Length
      308 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
5
Length
315
Type
peptide
Locations
Fulltext

Declared organism:
Artificial

Determined organism:
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:134536
      P08026
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      612.8 bits
    • Similarity
      97.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      P08026
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N46MNM3N193M mismatches: 12 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802646
      NP_288673
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      612.5 bits
    • Similarity
      97.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NP_288673
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N46MNM3N193M mismatches: 12 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:9955819
      CAC05622
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      612.1 bits
    • Similarity
      97.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CAC05622
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N46MNM3N193M mismatches: 12 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:260854747
      YP_003228638
    • Hit length
      318 aa
    • E Value
      0E0
    • BLAST Score
      612.1 bits
    • Similarity
      97.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      YP_003228638
      99.06% cov
    • Alignment Length
      315 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:535055
      CAA85368
      1 of 11 hits reported for Escherichia coli.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      610.5 bits
    • Similarity
      97.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CAA85368
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400302
      BAC78639
      1 of 2 hits reported for Escherichia coli O157:H7.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      609.8 bits
    • Similarity
      97.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      BAC78639
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 99.0741

    Escherichia coli 99.0741

    • Public DB hit
      GI:386172515
      EIH44542
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      609.4 bits
    • Similarity
      97.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      EIH44542
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O111:NM

    Escherichia coli O111:NM

    • Public DB hit
      GI:108743114
      CAJ76690
      1 of 2 hits reported for Escherichia coli O111:NM.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      607.4 bits
    • Similarity
      97.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      CAJ76690
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 93-001

    Escherichia coli 93-001

    • Public DB hit
      GI:390660382
      EIN38089
    • Hit length
      308 aa
    • E Value
      0E0
    • BLAST Score
      597 bits
    • Similarity
      97.73%
    • Coverage
      97.78%
    • Alignment (schematic)

      SEQ ID NO 5
      97.78% cov
      EIN38089
      100% cov
    • Alignment Length
      308 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
6
Length
315
Type
peptide
Locations
Fulltext

Declared organism:
Artificial

Determined organism:
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:134536
      P08026
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      590.5 bits
    • Similarity
      94.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      P08026
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N195M3NM2NM4NM4N33M mismatches: 21 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802646
      NP_288673
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      589.7 bits
    • Similarity
      94.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NP_288673
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N195M3NM2NM4NM4N33M mismatches: 21 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:260854747
      YP_003228638
    • Hit length
      318 aa
    • E Value
      0E0
    • BLAST Score
      589.7 bits
    • Similarity
      94.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      YP_003228638
      99.06% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N195M3NM2NM4NM4N33M mismatches: 21 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:9955819
      CAC05622
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      589.7 bits
    • Similarity
      94.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CAC05622
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:535055
      CAA85368
      1 of 11 hits reported for Escherichia coli.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      588.2 bits
    • Similarity
      94.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CAA85368
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400302
      BAC78639
      1 of 2 hits reported for Escherichia coli O157:H7.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      587 bits
    • Similarity
      94.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      BAC78639
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 99.0741

    Escherichia coli 99.0741

    • Public DB hit
      GI:386172515
      EIH44542
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      586.6 bits
    • Similarity
      94.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EIH44542
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O111:NM

    Escherichia coli O111:NM

    • Public DB hit
      GI:108743114
      CAJ76690
      1 of 2 hits reported for Escherichia coli O111:NM.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      585.1 bits
    • Similarity
      94.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      CAJ76690
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 1.2264

    Escherichia coli 1.2264

    • Public DB hit
      GI:386162070
      EIH23872
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      580.1 bits
    • Similarity
      93.65%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      EIH23872
      100% cov
    • Alignment Length
      315 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
7
Length
315
Type
peptide
Locations
Fulltext

Declared organism:
Artificial

Determined organism:
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:134536
      P08026
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      603.6 bits
    • Similarity
      96.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      P08026
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      117MNM3N144M3NM2NM4NM4N33M mismatches: 17 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802646
      NP_288673
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      602.4 bits
    • Similarity
      96.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NP_288673
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      66MN50MNM3N144M3NM2NM4NM4N33M mismatches: 18 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:260854747
      YP_003228638
    • Hit length
      318 aa
    • E Value
      0E0
    • BLAST Score
      602.1 bits
    • Similarity
      96.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      YP_003228638
      99.06% cov
    • Alignment Length
      315 aa
    • CIGAR string
      66MN50MNM3N144M3NM2NM4NM4N33M mismatches: 18 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:295882027
      ADG56725
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      318 aa
    • E Value
      0E0
    • BLAST Score
      602.1 bits
    • Similarity
      96.51%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      ADG56725
      99.06% cov
    • Alignment Length
      315 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:535055
      CAA85368
      1 of 11 hits reported for Escherichia coli.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      600.5 bits
    • Similarity
      96.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CAA85368
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400299
      BAC78637
      1 of 2 hits reported for Escherichia coli O157:H7.
    • Hit length
      313 aa
    • E Value
      0E0
    • BLAST Score
      599.4 bits
    • Similarity
      96.49%
    • Coverage
      99.37%
    • Alignment (schematic)

      SEQ ID NO 7
      99.37% cov
      BAC78637
      100% cov
    • Alignment Length
      313 aa
  • Escherichia coli 99.0741

    Escherichia coli 99.0741

    • Public DB hit
      GI:386172515
      EIH44542
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      599.4 bits
    • Similarity
      96.19%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      EIH44542
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O111:NM

    Escherichia coli O111:NM

    • Public DB hit
      GI:108743114
      CAJ76690
      1 of 2 hits reported for Escherichia coli O111:NM.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      597.4 bits
    • Similarity
      95.87%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      CAJ76690
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 1.2264

    Escherichia coli 1.2264

    • Public DB hit
      GI:386162070
      EIH23872
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      592 bits
    • Similarity
      95.24%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      EIH23872
      100% cov
    • Alignment Length
      315 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
8
Length
315
Type
peptide
Locations
Claims, Fulltext

Declared organism:
Artificial

Determined organism:
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:134536
      P08026
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      584.7 bits
    • Similarity
      94.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      P08026
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N46MNM3N144M3NM2NM4NM4N33M mismatches: 25 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15802646
      NP_288673
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      584.3 bits
    • Similarity
      94.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NP_288673
      100% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N46MNM3N144M3NM2NM4NM4N33M mismatches: 25 - insertions: 0 - deletions: 0
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:295882027
      ADG56725
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      318 aa
    • E Value
      0E0
    • BLAST Score
      584.7 bits
    • Similarity
      94.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      ADG56725
      99.06% cov
    • Alignment Length
      315 aa
    • CIGAR string
      63M8N46MNM3N144M3NM2NM4NM4N33M mismatches: 25 - insertions: 0 - deletions: 0
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:260854747
      YP_003228638
    • Hit length
      318 aa
    • E Value
      0E0
    • BLAST Score
      584.3 bits
    • Similarity
      94.6%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      YP_003228638
      99.06% cov
    • Alignment Length
      315 aa
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:535055
      CAA85368
      1 of 11 hits reported for Escherichia coli.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      582.4 bits
    • Similarity
      94.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CAA85368
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:32400302
      BAC78639
      1 of 2 hits reported for Escherichia coli O157:H7.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      581.6 bits
    • Similarity
      94.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      BAC78639
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 99.0741

    Escherichia coli 99.0741

    • Public DB hit
      GI:386172515
      EIH44542
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      581.6 bits
    • Similarity
      94.29%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EIH44542
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli O111:NM

    Escherichia coli O111:NM

    • Public DB hit
      GI:108743114
      CAJ76690
      1 of 2 hits reported for Escherichia coli O111:NM.
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      579.7 bits
    • Similarity
      93.97%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      CAJ76690
      100% cov
    • Alignment Length
      315 aa
  • Escherichia coli 1.2264

    Escherichia coli 1.2264

    • Public DB hit
      GI:386162070
      EIH23872
    • Hit length
      315 aa
    • E Value
      0E0
    • BLAST Score
      574.3 bits
    • Similarity
      93.33%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      EIH23872
      100% cov
    • Alignment Length
      315 aa
Occurrence
11 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
9
Length
1,227
Type
DNA
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:189345241
      EU700490
      1 of 9 hits reported for Escherichia coli.
    • Hit length
      1,349 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      EU700490
      90.96% cov
    • Alignment Length
      1,227 bp
    • CIGAR string
      1227M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:7239813
      AF034975
      1 of 3 hits reported for Enterobacteria phage H-19B.
    • Hit length
      18,362 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AF034975
      6.68% cov
    • Alignment Length
      1,227 bp
    • CIGAR string
      1227M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage 933J

    Enterobacteria phage 933J

    • Public DB hit
      GI:215072
      M19473
    • Hit length
      1,499 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      M19473
      81.85% cov
    • Alignment Length
      1,227 bp
    • CIGAR string
      1227M mismatches: 0 - insertions: 0 - deletions: 0
  • Phage h30

    Phage h30

    • Public DB hit
      GI:215049
      M23980
    • Hit length
      1,905 bp
    • E Value
      0E0
    • BLAST Score
      2,267 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      M23980
      64.41% cov
    • Alignment Length
      1,227 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP010958
      0.02% cov
    • Alignment Length
      1,227 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP010953
      0.02% cov
    • Alignment Length
      1,227 bp
  • Enterobacteria phage YYZ-2008

    Enterobacteria phage YYZ-2008

    • Public DB hit
      GI:208970794
      FJ184280
    • Hit length
      54,896 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      FJ184280
      2.24% cov
    • Alignment Length
      1,227 bp
  • Stx1-converting phage phi-O153

    Stx1-converting phage phi-O153

    • Public DB hit
      GI:56682761
      AY838795
    • Hit length
      7,333 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AY838795
      16.73% cov
    • Alignment Length
      1,227 bp
  • Enterobacteria phage BP-4795

    Enterobacteria phage BP-4795

    • Public DB hit
      GI:49523585
      AJ556162
    • Hit length
      57,930 bp
    • E Value
      0E0
    • BLAST Score
      2,261.4 bits
    • Similarity
      99.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AJ556162
      2.12% cov
    • Alignment Length
      1,227 bp
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:9955818
      AJ271153
      1 of 3 hits reported for Shigella dysenteriae.
    • Hit length
      6,014 bp
    • E Value
      0E0
    • BLAST Score
      2,259.6 bits
    • Similarity
      99.84%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AJ271153
      20.4% cov
    • Alignment Length
      1,227 bp
  • Shigella dysenteriae Sd197

    Shigella dysenteriae Sd197

    • Public DB hit
      GI:81239530
      CP000034
    • Hit length
      4,369,232 bp
    • E Value
      0E0
    • BLAST Score
      2,250.3 bits
    • Similarity
      99.76%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CP000034
      0.03% cov
    • Alignment Length
      1,227 bp
  • Escherichia coli O157:H7

    Escherichia coli O157:H7

    • Public DB hit
      GI:118201523
      EF079675
    • Hit length
      1,227 bp
    • E Value
      0E0
    • BLAST Score
      2,244.8 bits
    • Similarity
      99.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      EF079675
      100% cov
    • Alignment Length
      1,227 bp
  • Escherichia Stx1 converting phage

    Escherichia Stx1 converting phage

    • Public DB hit
      GI:32128012
      AP005153
    • Hit length
      59,866 bp
    • E Value
      0E0
    • BLAST Score
      2,244.8 bits
    • Similarity
      99.67%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AP005153
      2.05% cov
    • Alignment Length
      1,227 bp
Occurrence
18 times in PatSeqDB
Tools
PatSeq Finder
SEQ ID NO
10
Length
948
Type
DNA
Locations
Fulltext

Declared organism:
Escherichia coli

Determined organism:
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:189345241
      EU700490
      1 of 9 hits reported for Escherichia coli.
    • Hit length
      1,349 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      EU700490
      70.27% cov
    • Alignment Length
      948 bp
    • CIGAR string
      948M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage H-19B

    Enterobacteria phage H-19B

    • Public DB hit
      GI:7239813
      AF034975
      1 of 3 hits reported for Enterobacteria phage H-19B.
    • Hit length
      18,362 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AF034975
      5.16% cov
    • Alignment Length
      948 bp
    • CIGAR string
      948M mismatches: 0 - insertions: 0 - deletions: 0
  • Enterobacteria phage 933J

    Enterobacteria phage 933J

    • Public DB hit
      GI:215072
      M19473
    • Hit length
      1,499 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      M19473
      63.24% cov
    • Alignment Length
      948 bp
    • CIGAR string
      948M mismatches: 0 - insertions: 0 - deletions: 0
  • Phage h30

    Phage h30

    • Public DB hit
      GI:215049
      M23980
    • Hit length
      1,905 bp
    • E Value
      0E0
    • BLAST Score
      1,751.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      M23980
      49.76% cov
    • Alignment Length
      948 bp
  • Escherichia coli O103:H2 str. 12009

    Escherichia coli O103:H2 str. 12009

    • Public DB hit
      GI:257757386
      AP010958
    • Hit length
      5,449,314 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP010958
      0.02% cov
    • Alignment Length
      948 bp
  • Escherichia coli O26:H11 str. 11368

    Escherichia coli O26:H11 str. 11368

    • Public DB hit
      GI:257751862
      AP010953
    • Hit length
      5,697,240 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AP010953
      0.02% cov
    • Alignment Length
      948 bp
  • Enterobacteria phage YYZ-2008

    Enterobacteria phage YYZ-2008

    • Public DB hit
      GI:208970794
      FJ184280
    • Hit length
      54,896 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      FJ184280
      1.73% cov
    • Alignment Length
      948 bp
  • Stx1-converting phage phi-O153

    Stx1-converting phage phi-O153

    • Public DB hit
      GI:56682761
      AY838795
    • Hit length
      7,333 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AY838795
      12.93% cov
    • Alignment Length
      948 bp
  • Enterobacteria phage Lahn1

    Enterobacteria phage Lahn1

    • Public DB hit
      GI:23343476
      AJ413275
    • Hit length
      6,921 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AJ413275
      13.7% cov
    • Alignment Length
      948 bp
  • Enterobacteria phage BP-4795

    Enterobacteria phage BP-4795

    • Public DB hit
      GI:49523585
      AJ556162
    • Hit length
      57,930 bp
    • E Value
      0E0
    • BLAST Score
      1,746.2 bits
    • Similarity
      99.89%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AJ556162
      1.64% cov
    • Alignment Length
      948 bp
  • Shigella dysenteriae

    Shigella dysenteriae

    • Public DB hit
      GI:9955818
      AJ271153
      1 of 2 hits reported for Shigella dysenteriae.
    • Hit length
      6,014 bp
    • E Value
      0E0
    • BLAST Score
      1,744.4 bits
    • Similarity
      99.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AJ271153
      15.76% cov
    • Alignment Length
      948 bp
  • Shigella dysenteriae Sd197

    Shigella dysenteriae Sd197

    • Public DB hit
      GI:81239530
      CP000034
    • Hit length
      4,369,232 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      CP000034
      0.02% cov
    • Alignment Length
      948 bp
  • Shigella phage 7888

    Shigella phage 7888

    • Public DB hit
      GI:10799908
      AJ279086
    • Hit length
      8,053 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AJ279086
      11.77% cov
    • Alignment Length
      948 bp
  • Shigella sonnei

    Shigella sonnei

    • Public DB hit
      GI:4454334
      AJ132761
    • Hit length
      1,362 bp
    • E Value
      0E0
    • BLAST Score
      1,735.1 bits
    • Similarity
      99.68%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AJ132761
      69.6% cov
    • Alignment Length
      948 bp
Occurrence
18 times in PatSeqDB
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