Tyr A Genes And Uses Thereof

  • Published: Jul 30, 2008
  • Earliest Priority: May 09 2001
  • Family: 1
  • Cited Works: 358
  • Cited by: 0
  • Cites: 82
  • Sequences: 12
  • Additional Info: Cited Works
Data obtained from: NCBI GenBank (EBI) EMBL-EBI Pat EPO Sequence Listings DDBJ Pat
12 sequences found in this patent (in total)

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Displaying 1 - 10 of 12 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,122
Sequence Type
DNA
Locations
Undetermined
Declared organism
Pantoea agglomerans
Determined organism
Occurrence
58 times in PatSeqDB
Tools
SEQ ID NO
2
Length
373
Sequence Type
peptide
Locations
Undetermined
Declared organism
Pantoea agglomerans
Determined organism
Occurrence
70 times in PatSeqDB
Tools
SEQ ID NO
3
Length
1,122
Sequence Type
DNA
Locations
Undetermined
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli O55:H7 str. CB9615

    Escherichia coli O55:H7 str. CB9615

    • Public DB hit
      GI:290760697
      CP001846
    • Hit length
      5,386,352 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001846
      0.02% cov
    • Alignment Length
      1,122 bp
    • CIGAR string
      1122M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. TW14359

    Escherichia coli O157:H7 str. TW14359

    • Public DB hit
      GI:254590536
      CP001368
    • Hit length
      5,528,136 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001368
      0.02% cov
    • Alignment Length
      1,122 bp
    • CIGAR string
      1122M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli

    Escherichia coli

    • Public DB hit
      GI:209762625
      EU897069
      1 of 5 hits reported for Escherichia coli.
    • Hit length
      1,122 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      EU897069
      100% cov
    • Alignment Length
      1,122 bp
    • CIGAR string
      1122M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EC4115

    Escherichia coli O157:H7 str. EC4115

    • Public DB hit
      GI:209157093
      CP001164
    • Hit length
      5,572,075 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001164
      0.02% cov
    • Alignment Length
      1,122 bp
    • CIGAR string
      1122M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. Sakai

    Escherichia coli O157:H7 str. Sakai

    • Public DB hit
      GI:47118301
      BA000007
    • Hit length
      5,498,450 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      BA000007
      0.02% cov
    • Alignment Length
      1,122 bp
    • CIGAR string
      1122M mismatches: 0 - insertions: 0 - deletions: 0
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:56384585
      AE005174
    • Hit length
      5,528,445 bp
    • E Value
      0E0
    • BLAST Score
      2,073.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AE005174
      0.02% cov
    • Alignment Length
      1,122 bp
    • CIGAR string
      1122M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella dysenteriae Sd197

    Shigella dysenteriae Sd197

    • Public DB hit
      GI:81239530
      CP000034
    • Hit length
      4,369,232 bp
    • E Value
      0E0
    • BLAST Score
      1,984.4 bits
    • Similarity
      98.58%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000034
      0.03% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      101MN37MN138MN8MDMIM2NMN2MN5MN8MN5MN17MN23MN49MN66MN645M mismatches: 14 - insertions: 1 - deletions: 1
  • Shigella flexneri 5 str. 8401

    Shigella flexneri 5 str. 8401

    • Public DB hit
      GI:110613622
      CP000266
    • Hit length
      4,574,284 bp
    • E Value
      0E0
    • BLAST Score
      1,956.7 bits
    • Similarity
      98.13%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000266
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN23MN116MN116MN8MN53MN68MN35MN125MN29MN204M mismatches: 19 - insertions: 1 - deletions: 1
  • Shigella flexneri 2002017

    Shigella flexneri 2002017

    • Public DB hit
      GI:281599365
      CP001383
    • Hit length
      4,650,856 bp
    • E Value
      0E0
    • BLAST Score
      1,951.2 bits
    • Similarity
      98.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001383
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      102MN43MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN23MN116MN116MN8MN53MN68MN35MN125MN29MN204M mismatches: 20 - insertions: 1 - deletions: 1
  • Shigella flexneri 2a str. 301

    Shigella flexneri 2a str. 301

    • Public DB hit
      GI:24080789
      AE005674
    • Hit length
      4,607,203 bp
    • E Value
      0E0
    • BLAST Score
      1,951.2 bits
    • Similarity
      98.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AE005674
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      102MN43MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN23MN116MN116MN8MN53MN68MN35MN125MN29MN204M mismatches: 20 - insertions: 1 - deletions: 1
  • Shigella flexneri 2a str. 2457T

    Shigella flexneri 2a str. 2457T

    • Public DB hit
      GI:30043918
      AE014073
    • Hit length
      4,599,354 bp
    • E Value
      0E0
    • BLAST Score
      1,951.2 bits
    • Similarity
      98.04%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AE014073
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      102MN43MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN23MN116MN116MN8MN53MN68MN35MN125MN29MN204M mismatches: 20 - insertions: 1 - deletions: 1
  • Escherichia coli ETEC H10407

    Escherichia coli ETEC H10407

    • Public DB hit
      GI:309700213
      FN649414
    • Hit length
      5,153,435 bp
    • E Value
      0E0
    • BLAST Score
      1,945.6 bits
    • Similarity
      97.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FN649414
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN20MN158MN23MN26MN5MN5MN6MN7MN114MN178MN29MN204M mismatches: 21 - insertions: 1 - deletions: 1
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284919779
      FN554766
    • Hit length
      5,241,977 bp
    • E Value
      0E0
    • BLAST Score
      1,945.6 bits
    • Similarity
      97.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      FN554766
      0.02% cov
    • Alignment Length
      1,122 bp
    • CIGAR string
      146MN12MN154MN2MN134MN14MN47MN11MN38MN5MN5MN14MN8MN53MN51MN16MN35MN26MN74MN11MN11MN224MN5MN3M mismatches: 23 - insertions: 0 - deletions: 0
  • Escherichia coli ED1a

    Escherichia coli ED1a

    • Public DB hit
      GI:218425442
      CU928162
    • Hit length
      5,209,548 bp
    • E Value
      0E0
    • BLAST Score
      1,945.6 bits
    • Similarity
      97.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CU928162
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN140MDMIM2NMN8MN8MN2MN2MN134MN23MN50MN50MN14MN8MN53MN68MN35MN26MN41MN56MN83MN150M mismatches: 21 - insertions: 1 - deletions: 1
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:73854091
      CP000038
    • Hit length
      4,825,265 bp
    • E Value
      0E0
    • BLAST Score
      1,945.6 bits
    • Similarity
      97.95%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP000038
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN140MN116MN8MN53MN51MN16MN35MN26MN8MN89MN224MN9M mismatches: 21 - insertions: 1 - deletions: 1
  • Escherichia coli UMNK88

    Escherichia coli UMNK88

    • Public DB hit
      GI:332341332
      CP002729
    • Hit length
      5,186,416 bp
    • E Value
      0E0
    • BLAST Score
      1,940.1 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002729
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN20MN158MN23MN19MN6MN5MN5MN6MN7MN114MN178MN29MN204M mismatches: 22 - insertions: 1 - deletions: 1
  • Escherichia coli DH1

    Escherichia coli DH1

    • Public DB hit
      GI:315134697
      AP012030
      1 of 2 hits reported for Escherichia coli DH1.
    • Hit length
      4,621,430 bp
    • E Value
      0E0
    • BLAST Score
      1,940.1 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AP012030
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN131MN8MDMIM2NMN2MN5MN8MN5MN17MN20MN158MN23MN19MN6MN5MN5MN6MN7MN114MN178MN29MN204M mismatches: 22 - insertions: 1 - deletions: 1
  • Escherichia coli UM146

    Escherichia coli UM146

    • Public DB hit
      GI:307625127
      CP002167
    • Hit length
      4,993,013 bp
    • E Value
      0E0
    • BLAST Score
      1,940.1 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP002167
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN140MIMDM2NMN8MN8MN2MN2MN102MN31MN23MN50MN50MN14MN8MN53MN68MN35MN26MN41MN56MN99MN134M mismatches: 22 - insertions: 1 - deletions: 1
  • Escherichia coli ABU 83972

    Escherichia coli ABU 83972

    • Public DB hit
      GI:307551844
      CP001671
    • Hit length
      5,131,397 bp
    • E Value
      0E0
    • BLAST Score
      1,940.1 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001671
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN140MIMDM2NMN8MN8MN2MN2MN102MN31MN23MN50MN50MN14MN8MN53MN68MN35MN26MN41MN56MN99MN134M mismatches: 22 - insertions: 1 - deletions: 1
  • Escherichia coli IHE3034

    Escherichia coli IHE3034

    • Public DB hit
      GI:294489418
      CP001969
    • Hit length
      5,108,383 bp
    • E Value
      0E0
    • BLAST Score
      1,940.1 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      CP001969
      0.02% cov
    • Alignment Length
      1,123 bp
    • CIGAR string
      146MN140MIMDM2NMN8MN8MN2MN2MN102MN31MN23MN50MN50MN14MN8MN53MN68MN35MN26MN41MN56MN99MN134M mismatches: 22 - insertions: 1 - deletions: 1
Occurrence
16 times in PatSeqDB
Tools
SEQ ID NO
4
Length
373
Sequence Type
peptide
Locations
Undetermined
Declared organism
Escherichia coli
Determined organism
  • Escherichia coli O157:H7 str. EDL933

    Escherichia coli O157:H7 str. EDL933

    • Public DB hit
      GI:15803122
      NP_289153
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      761.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_289153
      100% cov
    • Alignment Length
      373 aa
    • CIGAR string
      373M mismatches: 0 - insertions: 0 - deletions: 0
  • Shigella sonnei Ss046

    Shigella sonnei Ss046

    • Public DB hit
      GI:74313184
      YP_311603
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      760.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_311603
      100% cov
    • Alignment Length
      373 aa
    • CIGAR string
      96MN276M mismatches: 1 - insertions: 0 - deletions: 0
  • Escherichia coli CFT073

    Escherichia coli CFT073

    • Public DB hit
      GI:26248963
      NP_755003
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      759.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_755003
      100% cov
    • Alignment Length
      373 aa
    • CIGAR string
      96MN43MN232M mismatches: 2 - insertions: 0 - deletions: 0
  • Escherichia coli 042

    Escherichia coli 042

    • Public DB hit
      GI:284922546
      CBG35633
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      759.2 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      CBG35633
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli TA206

    Escherichia coli TA206

    • Public DB hit
      GI:331658748
      ZP_08359690
      1 of 2 hits reported for Escherichia coli TA206.
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_08359690
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli O111:H- str. 11128

    Escherichia coli O111:H- str. 11128

    • Public DB hit
      GI:260869281
      YP_003235683
      1 of 2 hits reported for Escherichia coli O111:H- str. 11128.
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_003235683
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli IAI1

    Escherichia coli IAI1

    • Public DB hit
      GI:218555179
      YP_002388092
      1 of 2 hits reported for Escherichia coli IAI1.
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_002388092
      100% cov
    • Alignment Length
      373 aa
  • Shigella boydii Sb227

    Shigella boydii Sb227

    • Public DB hit
      GI:82545056
      YP_409003
      1 of 2 hits reported for Shigella boydii Sb227.
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_409003
      100% cov
    • Alignment Length
      373 aa
  • Shigella flexneri 2a str. 301

    Shigella flexneri 2a str. 301

    • Public DB hit
      GI:24113939
      NP_708449
      1 of 2 hits reported for Shigella flexneri 2a str. 301.
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.8 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_708449
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli str. K-12 substr. MG1655

    Escherichia coli str. K-12 substr. MG1655

    • Public DB hit
      GI:16130521
      NP_417091
      1 of 2 hits reported for Escherichia coli str. K-12 substr. MG1655.
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.4 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_417091
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli E24377A

    Escherichia coli E24377A

    • Public DB hit
      GI:157158605
      YP_001463919
      1 of 2 hits reported for Escherichia coli E24377A.
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.4 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      YP_001463919
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli MS 117-3

    Escherichia coli MS 117-3

    • Public DB hit
      GI:324016596
      EGB85815
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      EGB85815
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli NC101

    Escherichia coli NC101

    • Public DB hit
      GI:306812482
      ZP_07446680
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.1 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_07446680
      100% cov
    • Alignment Length
      373 aa
  • Escherichia coli MS 69-1

    Escherichia coli MS 69-1

    • Public DB hit
      GI:301026368
      ZP_07189814
    • Hit length
      373 aa
    • E Value
      0E0
    • BLAST Score
      758.1 bits
    • Similarity
      99.73%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      ZP_07189814
      100% cov
    • Alignment Length
      373 aa
Occurrence
13 times in PatSeqDB
Tools
SEQ ID NO
5
Length
25
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
6
Length
32
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
7
Length
25
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
8
Length
26
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
9
Length
59
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
10
Length
59
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
Occurrence
8 times in PatSeqDB
Tools

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