Functional Toll-like Receptors (tlr) On Melanocytes And Melanoma Cells And Uses Thereof

  • Published: Jun 1, 2011
  • Earliest Priority: Apr 24 2007
  • Family: 8
  • Cited Works: 53
  • Cited by: 0
  • Cites: 4
  • Sequences: 39
  • Additional Info: Cited Works
Data obtained from: EMBL-EBI Pat DDBJ Pat EPO Sequence Listings NCBI GenBank (EBI)
39 sequences found in this patent (in total)

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Download sequences in fasta format: 39 DNAs

Displaying 1 - 10 of 39 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
20
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:163954974
      NG_007073
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      10,880 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NG_007073
      0.18% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332860561
      XR_019963
      1 of 6 hits reported for Pan troglodytes.
    • Hit length
      1,220 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XR_019963
      1.64% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332243775
      XR_122234
      1 of 4 hits reported for Nomascus leucogenys.
    • Hit length
      1,226 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XR_122234
      1.63% cov
    • Alignment Length
      20 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:306482640
      NM_001195426
      1 of 3 hits reported for Macaca mulatta.
    • Hit length
      1,106 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      NM_001195426
      1.81% cov
    • Alignment Length
      20 bp
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301777483
      XM_002924114
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      796 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_002924114
      2.51% cov
    • Alignment Length
      20 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297709736
      XR_095984
      1 of 4 hits reported for Pongo abelii.
    • Hit length
      1,239 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XR_095984
      1.61% cov
    • Alignment Length
      20 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296237263
      XR_091132
      1 of 3 hits reported for Callithrix jacchus.
    • Hit length
      1,022 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XR_091132
      1.96% cov
    • Alignment Length
      20 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73961358
      XM_848906
    • Hit length
      760 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_848906
      2.63% cov
    • Alignment Length
      20 bp
Occurrence
33 times in PatSeqDB
Tools
SEQ ID NO
2
Length
19
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Monodelphis domestica

    Monodelphis domestica

    • Public DB hit
      GI:334348289
      XM_001364697
      1 of 2 hits reported for Monodelphis domestica.
    • Hit length
      1,056 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XM_001364697
      1.8% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332860561
      XR_019963
      1 of 4 hits reported for Pan troglodytes.
    • Hit length
      1,220 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XR_019963
      1.56% cov
    • Alignment Length
      19 bp
    • CIGAR string
      19M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332243833
      XR_122242
      1 of 4 hits reported for Nomascus leucogenys.
    • Hit length
      1,008 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XR_122242
      1.88% cov
    • Alignment Length
      19 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:306482640
      NM_001195426
      1 of 5 hits reported for Macaca mulatta.
    • Hit length
      1,106 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NM_001195426
      1.72% cov
    • Alignment Length
      19 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297709813
      XR_095997
      1 of 7 hits reported for Pongo abelii.
    • Hit length
      1,237 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XR_095997
      1.54% cov
    • Alignment Length
      19 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296224024
      XR_089930
      1 of 3 hits reported for Callithrix jacchus.
    • Hit length
      990 bp
    • E Value
      2.65E-1
    • BLAST Score
      38.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XR_089930
      1.92% cov
    • Alignment Length
      19 bp
Occurrence
32 times in PatSeqDB
Tools
SEQ ID NO
3
Length
21
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:281332104
      NG_016228
      1 of 24 hits reported for Homo sapiens.
    • Hit length
      15,537 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      NG_016228
      0.14% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:208965623
      AB463313
    • Hit length
      2,375 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AB463313
      0.88% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
4
Length
22
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:319655745
      NG_028087
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      40,114 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NG_028087
      0.05% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332218965
      XM_003258582
      1 of 8 hits reported for Nomascus leucogenys.
    • Hit length
      2,977 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_003258582
      0.74% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297673321
      XM_002814667
      1 of 6 hits reported for Pongo abelii.
    • Hit length
      5,900 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002814667
      0.37% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296196719
      XM_002745914
      1 of 2 hits reported for Callithrix jacchus.
    • Hit length
      2,361 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_002745914
      0.93% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:194363740
      NM_001130430
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      2,391 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001130430
      0.92% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:194440761
      NM_001130468
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      2,391 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NM_001130468
      0.92% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149702823
      XM_001498644
    • Hit length
      2,544 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      XM_001498644
      0.86% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
5
Length
21
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:68160956
      NM_003264
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      3,417 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      NM_003264
      0.61% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:164652835
      EU204933
    • Hit length
      2,882 bp
    • E Value
      1.01E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      95.24%
    • Alignment (schematic)

      SEQ ID NO 5
      95.24% cov
      EU204933
      0.69% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M mismatches: 0 - insertions: 0 - deletions: 0
  • Cercocebus atys

    Cercocebus atys

    • Public DB hit
      GI:164652833
      EU204932
    • Hit length
      2,873 bp
    • E Value
      1.01E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      95.24%
    • Alignment (schematic)

      SEQ ID NO 5
      95.24% cov
      EU204932
      0.7% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M mismatches: 0 - insertions: 0 - deletions: 0
  • Gallus gallus

    Gallus gallus

    • Public DB hit
      GI:128612215
      AC192058
    • Hit length
      178,420 bp
    • E Value
      1.01E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      95.24%
    • Alignment (schematic)

      SEQ ID NO 5
      95.24% cov
      AC192058
      0.01% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M1H mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:15281145
      AY045573
    • Hit length
      2,626 bp
    • E Value
      1.01E-1
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      95.24%
    • Alignment (schematic)

      SEQ ID NO 5
      95.24% cov
      AY045573
      0.76% cov
    • Alignment Length
      20 bp
    • CIGAR string
      1H20M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
6
Length
21
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:281332105
      NG_016229
      1 of 2 hits reported for Homo sapiens.
    • Hit length
      28,803 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NG_016229
      0.07% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:194363732
      NM_001130425
    • Hit length
      2,355 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NM_001130425
      0.89% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:194440745
      NM_001130469
    • Hit length
      2,355 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      NM_001130469
      0.89% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca fuscata

    Macaca fuscata

    • Public DB hit
      GI:327397105
      AB607964
    • Hit length
      2,355 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AB607964
      0.89% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:307685324
      AB590438
    • Hit length
      2,369 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      AB590438
      0.89% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes verus

    Pan troglodytes verus

    • Public DB hit
      GI:296910259
      GQ343382
      1 of 19 hits reported for Pan troglodytes verus.
    • Hit length
      4,738 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      GQ343382
      0.44% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
7
Length
22
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332244767
      XM_003271498
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      3,090 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_003271498
      0.71% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297674799
      XM_002815351
      1 of 4 hits reported for Pongo abelii.
    • Hit length
      2,590 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      XM_002815351
      0.85% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:126722820
      NM_001082219
      1 of 2 hits reported for Oryctolagus cuniculus.
    • Hit length
      2,824 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001082219
      0.78% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:79750629
      NM_001036685
      1 of 5 hits reported for Macaca mulatta.
    • Hit length
      2,715 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_001036685
      0.81% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:19718735
      NM_003265
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      3,057 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_003265
      0.72% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Pteropus alecto

    Pteropus alecto

    • Public DB hit
      GI:308055163
      GU045602
    • Hit length
      2,947 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      GU045602
      0.75% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Cercocebus atys

    Cercocebus atys

    • Public DB hit
      GI:164652839
      EU204935
    • Hit length
      2,781 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      EU204935
      0.79% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:194068424
      AB445636
    • Hit length
      2,715 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AB445636
      0.81% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo pygmaeus

    Pongo pygmaeus

    • Public DB hit
      GI:194068422
      AB445635
    • Hit length
      2,715 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AB445635
      0.81% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
  • Gorilla gorilla

    Gorilla gorilla

    • Public DB hit
      GI:194068420
      AB445634
    • Hit length
      2,715 bp
    • E Value
      6.44E-3
    • BLAST Score
      44.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      AB445634
      0.81% cov
    • Alignment Length
      22 bp
    • CIGAR string
      22M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
8
Length
20
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:163965403
      NG_007278
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      22,944 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NG_007278
      0.09% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301776069
      XM_002923407
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      2,888 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_002923407
      0.69% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:194440755
      NM_001130470
    • Hit length
      2,715 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001130470
      0.74% cov
    • Alignment Length
      20 bp
    • CIGAR string
      20M mismatches: 0 - insertions: 0 - deletions: 0
  • Felis catus

    Felis catus

    • Public DB hit
      GI:119637846
      NM_001079829
    • Hit length
      2,890 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001079829
      0.69% cov
    • Alignment Length
      20 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:148230822
      NM_001097444
      1 of 8 hits reported for Sus scrofa.
    • Hit length
      3,100 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001097444
      0.65% cov
    • Alignment Length
      20 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:79750629
      NM_001036685
    • Hit length
      2,715 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001036685
      0.74% cov
    • Alignment Length
      20 bp
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73979559
      XM_540020
    • Hit length
      2,718 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_540020
      0.74% cov
    • Alignment Length
      20 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:56710322
      NM_001008664
    • Hit length
      3,025 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      NM_001008664
      0.66% cov
    • Alignment Length
      20 bp
  • Pan troglodytes verus

    Pan troglodytes verus

    • Public DB hit
      GI:296910315
      GQ343401
      1 of 5 hits reported for Pan troglodytes verus.
    • Hit length
      9,077 bp
    • E Value
      6.71E-2
    • BLAST Score
      40.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      GQ343401
      0.22% cov
    • Alignment Length
      20 bp
Occurrence
10 times in PatSeqDB
Tools
SEQ ID NO
9
Length
18
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332229860
      XM_003264058
      1 of 4 hits reported for Nomascus leucogenys.
    • Hit length
      5,894 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_003264058
      0.31% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:308193349
      NM_001002950
      1 of 2 hits reported for Canis lupus familiaris.
    • Hit length
      3,114 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001002950
      0.58% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Ailuropoda melanoleuca

    Ailuropoda melanoleuca

    • Public DB hit
      GI:301789036
      XM_002929889
      1 of 2 hits reported for Ailuropoda melanoleuca.
    • Hit length
      2,697 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002929889
      0.67% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297685233
      XR_094243
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      4,790 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XR_094243
      0.38% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:207028620
      NM_138554
      1 of 6 hits reported for Homo sapiens.
    • Hit length
      5,667 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_138554
      0.32% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:198282104
      NM_001037092
    • Hit length
      2,481 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001037092
      0.73% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:221554504
      NM_001144863
    • Hit length
      2,520 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001144863
      0.71% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:118130391
      NM_021297
    • Hit length
      3,847 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_021297
      0.47% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:25742798
      NM_019178
      1 of 2 hits reported for Rattus norvegicus.
    • Hit length
      3,373 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_019178
      0.53% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Felis catus

    Felis catus

    • Public DB hit
      GI:57163760
      NM_001009223
    • Hit length
      3,113 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_001009223
      0.58% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Solanum lycopersicum

    Solanum lycopersicum

    • Public DB hit
      GI:332000122
      AC244578
    • Hit length
      96,350 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AC244578
      0.02% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Lagenorhynchus obliquidens

    Lagenorhynchus obliquidens

    • Public DB hit
      GI:307574469
      AB492856
    • Hit length
      2,526 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AB492856
      0.71% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca nemestrina

    Macaca nemestrina

    • Public DB hit
      GI:295149275
      GU969614
    • Hit length
      2,481 bp
    • E Value
      1.05E0
    • BLAST Score
      36.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      GU969614
      0.73% cov
    • Alignment Length
      18 bp
    • CIGAR string
      18M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
10
Length
17
Sequence Type
DNA
Locations
Undetermined
Declared organism
Artificial
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:224809269
      NG_011475
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      20,309 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NG_011475
      0.08% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335308875
      XM_003361358
      1 of 3 hits reported for Sus scrofa.
    • Hit length
      2,810 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      XM_003361358
      0.6% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:198282104
      NM_001037092
    • Hit length
      2,481 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_001037092
      0.69% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:221554504
      NM_001144863
    • Hit length
      2,520 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      NM_001144863
      0.67% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Physeter catodon

    Physeter catodon

    • Public DB hit
      GI:307574477
      AB500181
    • Hit length
      2,304 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AB500181
      0.74% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Balaenoptera acutorostrata

    Balaenoptera acutorostrata

    • Public DB hit
      GI:307574475
      AB500180
    • Hit length
      2,870 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AB500180
      0.59% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Orcinus orca

    Orcinus orca

    • Public DB hit
      GI:307574471
      AB492857
    • Hit length
      2,526 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      AB492857
      0.67% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes verus

    Pan troglodytes verus

    • Public DB hit
      GI:296910381
      GQ343420
      1 of 13 hits reported for Pan troglodytes verus.
    • Hit length
      11,634 bp
    • E Value
      4.15E0
    • BLAST Score
      34.2 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 10
      100% cov
      GQ343420
      0.15% cov
    • Alignment Length
      17 bp
    • CIGAR string
      17M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
3 times in PatSeqDB
Tools

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