Sel-12 Related Methods

  • Published: Oct 25, 2005
  • Earliest Priority: Sep 27 1995
  • Family: 10
  • Cited Works: 46
  • Cited by: 0
  • Cites: 4
  • Sequences: 27
  • Additional Info: Cited Works Full text
Data obtained from: EMBL-EBI Pat DDBJ Pat USPTO Fulltext NCBI GenBank
27 sequences found in this patent (in total)

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Download sequences in fasta format: 6 peptides 21 nucleotides

Displaying 1 - 10 of 27 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
461
Sequence Type
peptide
Locations
Undetermined
Declared organism
C. elegans
Determined organism
  • Caenorhabditis elegans

    Caenorhabditis elegans

    • Public DB hit
      GI:2133481
      S60253
      1 of 4 hits reported for Caenorhabditis elegans.
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      947.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      S60253
      100% cov
    • Alignment Length
      461 aa
    • CIGAR string
      461M mismatches: 0 - insertions: 0 - deletions: 0
  • Caenorhabditis briggsae

    Caenorhabditis briggsae

    • Public DB hit
      GI:268576495
      XP_002643227
      1 of 2 hits reported for Caenorhabditis briggsae.
    • Hit length
      448 aa
    • E Value
      1.5E-180
    • BLAST Score
      637.9 bits
    • Similarity
      83.64%
    • Coverage
      92.41%
    • Alignment (schematic)

      SEQ ID NO 1
      92.41% cov
      XP_002643227
      95.31% cov
    • Alignment Length
      434 aa
  • Caenorhabditis remanei

    Caenorhabditis remanei

    • Public DB hit
      GI:308489412
      XP_003106899
    • Hit length
      383 aa
    • E Value
      5.77E-145
    • BLAST Score
      519.6 bits
    • Similarity
      82.29%
    • Coverage
      72.89%
    • Alignment (schematic)

      SEQ ID NO 1
      72.89% cov
      XP_003106899
      90.86% cov
    • Alignment Length
      350 aa
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
2
Length
467
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4506163
      NP_000012
      1 of 4 hits reported for Homo sapiens.
    • Hit length
      467 aa
    • E Value
      0E0
    • BLAST Score
      966.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_000012
      100% cov
    • Alignment Length
      467 aa
    • CIGAR string
      195MN271M mismatches: 1 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:75041374
      Q5R780
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      467 aa
    • E Value
      0E0
    • BLAST Score
      961.1 bits
    • Similarity
      99.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q5R780
      100% cov
    • Alignment Length
      467 aa
    • CIGAR string
      57MN137MN105MN165M mismatches: 3 - insertions: 0 - deletions: 0
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:37082564
      Q8HXW5
    • Hit length
      467 aa
    • E Value
      0E0
    • BLAST Score
      956.8 bits
    • Similarity
      99.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      Q8HXW5
      100% cov
    • Alignment Length
      467 aa
    • CIGAR string
      179M2N14MN250MN20M mismatches: 4 - insertions: 0 - deletions: 0
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296215454
      XP_002754131
    • Hit length
      466 aa
    • E Value
      0E0
    • BLAST Score
      859 bits
    • Similarity
      99.36%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002754131
      100% cov
    • Alignment Length
      467 aa
  • Microcebus murinus

    Microcebus murinus

    • Public DB hit
      GI:6093848
      P79802
    • Hit length
      467 aa
    • E Value
      0E0
    • BLAST Score
      834.7 bits
    • Similarity
      97.43%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      P79802
      100% cov
    • Alignment Length
      467 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291406821
      XP_002719715
    • Hit length
      464 aa
    • E Value
      0E0
    • BLAST Score
      833.2 bits
    • Similarity
      97.86%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_002719715
      100% cov
    • Alignment Length
      468 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149737344
      XP_001489127
      1 of 2 hits reported for Equus caballus.
    • Hit length
      470 aa
    • E Value
      0E0
    • BLAST Score
      813.9 bits
    • Similarity
      95.53%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      XP_001489127
      100% cov
    • Alignment Length
      470 aa
  • Rattus norvegicus

    Rattus norvegicus

    • Public DB hit
      GI:47575859
      NP_062036
      1 of 3 hits reported for Rattus norvegicus.
    • Hit length
      468 aa
    • E Value
      0E0
    • BLAST Score
      813.9 bits
    • Similarity
      96.38%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_062036
      100% cov
    • Alignment Length
      469 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:50950141
      NP_001002943
    • Hit length
      466 aa
    • E Value
      0E0
    • BLAST Score
      813.5 bits
    • Similarity
      96.79%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_001002943
      100% cov
    • Alignment Length
      467 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:6679493
      NP_032969
      1 of 2 hits reported for Mus musculus.
    • Hit length
      467 aa
    • E Value
      0E0
    • BLAST Score
      813.5 bits
    • Similarity
      96.57%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 2
      100% cov
      NP_032969
      100% cov
    • Alignment Length
      467 aa
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
3
Length
157
Sequence Type
peptide
Locations
Undetermined
Declared organism
C. elegans
Determined organism
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73961465
      XP_547503
    • Hit length
      717 aa
    • E Value
      6.73E-67
    • BLAST Score
      257.3 bits
    • Similarity
      87.07%
    • Coverage
      93.63%
    • Alignment (schematic)

      SEQ ID NO 3
      93.63% cov
      XP_547503
      20.5% cov
    • Alignment Length
      147 aa
    • CIGAR string
      9H2N63MN53MN4M5NM7NM6N3M1H mismatches: 22 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332252150
      XP_003275216
    • Hit length
      583 aa
    • E Value
      8.16E-64
    • BLAST Score
      247.3 bits
    • Similarity
      95.38%
    • Coverage
      82.8%
    • Alignment (schematic)

      SEQ ID NO 3
      82.8% cov
      XP_003275216
      22.3% cov
    • Alignment Length
      130 aa
    • CIGAR string
      9H2N122M5NM18H mismatches: 7 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:156105679
      NP_000438
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      448 aa
    • E Value
      1.5E-63
    • BLAST Score
      246.5 bits
    • Similarity
      88.44%
    • Coverage
      93.63%
    • Alignment (schematic)

      SEQ ID NO 3
      93.63% cov
      NP_000438
      32.81% cov
    • Alignment Length
      147 aa
    • CIGAR string
      9H2N122M5NM7NM6N3M1H mismatches: 20 - insertions: 0 - deletions: 0
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30584235
      AAP36366
    • Hit length
      449 aa
    • E Value
      1.5E-63
    • BLAST Score
      246.5 bits
    • Similarity
      88.44%
    • Coverage
      93.63%
    • Alignment (schematic)

      SEQ ID NO 3
      93.63% cov
      AAP36366
      32.74% cov
    • Alignment Length
      147 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297280647
      XP_001087264
      1 of 3 hits reported for Macaca mulatta.
    • Hit length
      481 aa
    • E Value
      1.55E-63
    • BLAST Score
      246.1 bits
    • Similarity
      88.44%
    • Coverage
      93.63%
    • Alignment (schematic)

      SEQ ID NO 3
      93.63% cov
      XP_001087264
      30.56% cov
    • Alignment Length
      147 aa
  • Oryctolagus cuniculus

    Oryctolagus cuniculus

    • Public DB hit
      GI:291402050
      XP_002717668
    • Hit length
      448 aa
    • E Value
      1.82E-63
    • BLAST Score
      246.1 bits
    • Similarity
      87.76%
    • Coverage
      93.63%
    • Alignment (schematic)

      SEQ ID NO 3
      93.63% cov
      XP_002717668
      32.81% cov
    • Alignment Length
      147 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:1710119
      AAC52937
      1 of 4 hits reported for Mus musculus.
    • Hit length
      448 aa
    • E Value
      1.99E-63
    • BLAST Score
      245.7 bits
    • Similarity
      87.07%
    • Coverage
      93.63%
    • Alignment (schematic)

      SEQ ID NO 3
      93.63% cov
      AAC52937
      32.81% cov
    • Alignment Length
      147 aa
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197097324
      NP_001125243
    • Hit length
      448 aa
    • E Value
      3.23E-63
    • BLAST Score
      245.4 bits
    • Similarity
      87.76%
    • Coverage
      93.63%
    • Alignment (schematic)

      SEQ ID NO 3
      93.63% cov
      NP_001125243
      32.81% cov
    • Alignment Length
      147 aa
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
4
Length
465
Sequence Type
peptide
Locations
Undetermined
Declared organism
C. elegans
Determined organism
  • Caenorhabditis elegans

    Caenorhabditis elegans

    • Public DB hit
      GI:17511093
      NP_492095
    • Hit length
      465 aa
    • E Value
      0E0
    • BLAST Score
      950.7 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 4
      100% cov
      NP_492095
      100% cov
    • Alignment Length
      465 aa
    • CIGAR string
      465M mismatches: 0 - insertions: 0 - deletions: 0
  • Caenorhabditis remanei

    Caenorhabditis remanei

    • Public DB hit
      GI:308469192
      XP_003096835
    • Hit length
      464 aa
    • E Value
      2.03E-168
    • BLAST Score
      597.4 bits
    • Similarity
      77.28%
    • Coverage
      99.35%
    • Alignment (schematic)

      SEQ ID NO 4
      99.35% cov
      XP_003096835
      99.78% cov
    • Alignment Length
      471 aa
    • CIGAR string
      3H2MNM2NM2N5MN7MN11MNMNMN7MN4MN3MN4M2N3MN3M2N10MN6MN2MNMN9MN7MN3MNMNMNM2N2MNMN3M2NM2NMNMN2M2N2M2N6MNMN2MN3MN2M2N11MN2M2N7MN27M3NM3N2MNM2N2MN3M4NM3INM3NM3NM2N3MN2MNMNMN7M2N6MN6M2N2MN2MDM2N3MN2IMN2MN3MN2M7D5NM5NM3N2M2NMN2M2N5M4N2M2NM8N2IMNM2IMN10M2N16MNM2NM3N2M3N9MN6M2N19MNMNM3NMN2M mismatches: 144 - insertions: 9 - deletions: 8
  • Caenorhabditis briggsae

    Caenorhabditis briggsae

    • Public DB hit
      GI:268560578
      XP_002646243
      1 of 2 hits reported for Caenorhabditis briggsae.
    • Hit length
      483 aa
    • E Value
      3.32E-166
    • BLAST Score
      590.1 bits
    • Similarity
      77.36%
    • Coverage
      97.85%
    • Alignment (schematic)

      SEQ ID NO 4
      97.85% cov
      XP_002646243
      97.72% cov
    • Alignment Length
      477 aa
    • CIGAR string
      3H3M3N2MN5MN6M2N6MN4MNMN9MN4MN2M2N4M2N3MN3M2N10MN6MN7MN3MN10MN2M2NMN3MN3MNMN2M3NM2NMNMN6M2N5M2NMN2MN3MN3MN5MN5MN2M2N7MN27M3NM3N2MNM2N2M2N2M3I6NM3NM3NM2N2M2NM2NMNM4N4MN7MN6M2NMN3MNM2N5MN6MN3MNMN4MNMN2M4DN2M2NM4NMN2MN3MN2M3N2M2NMN2INM4N2MND2N9M17IM2N18M2N3M2NM2N2MN6M2N4MNMN20MNMNM7H mismatches: 137 - insertions: 22 - deletions: 5
Occurrence
7 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,500
Sequence Type
nucleotide
Locations
Undetermined
Declared organism
C. elegans
Determined organism
  • Caenorhabditis elegans

    Caenorhabditis elegans

    • Public DB hit
      GI:1109793
      U35660
      1 of 3 hits reported for Caenorhabditis elegans.
    • Hit length
      1,461 bp
    • E Value
      0E0
    • BLAST Score
      2,688 bits
    • Similarity
      99.86%
    • Coverage
      97.4%
    • Alignment (schematic)

      SEQ ID NO 5
      97.4% cov
      U35660
      100% cov
    • Alignment Length
      1,462 bp
    • CIGAR string
      21H250MD3MI1207M18H mismatches: 0 - insertions: 1 - deletions: 1
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
6
Length
461
Sequence Type
peptide
Locations
Undetermined
Declared organism
C. elegans
Determined organism
  • Caenorhabditis elegans

    Caenorhabditis elegans

    • Public DB hit
      GI:2133481
      S60253
      1 of 4 hits reported for Caenorhabditis elegans.
    • Hit length
      461 aa
    • E Value
      0E0
    • BLAST Score
      947.6 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      S60253
      100% cov
    • Alignment Length
      461 aa
    • CIGAR string
      461M mismatches: 0 - insertions: 0 - deletions: 0
  • Caenorhabditis briggsae

    Caenorhabditis briggsae

    • Public DB hit
      GI:268576495
      XP_002643227
      1 of 2 hits reported for Caenorhabditis briggsae.
    • Hit length
      448 aa
    • E Value
      1.5E-180
    • BLAST Score
      637.9 bits
    • Similarity
      83.64%
    • Coverage
      92.41%
    • Alignment (schematic)

      SEQ ID NO 6
      92.41% cov
      XP_002643227
      95.31% cov
    • Alignment Length
      434 aa
  • Caenorhabditis remanei

    Caenorhabditis remanei

    • Public DB hit
      GI:308489412
      XP_003106899
    • Hit length
      383 aa
    • E Value
      5.77E-145
    • BLAST Score
      519.6 bits
    • Similarity
      82.29%
    • Coverage
      72.89%
    • Alignment (schematic)

      SEQ ID NO 6
      72.89% cov
      XP_003106899
      90.86% cov
    • Alignment Length
      350 aa
Occurrence
8 times in PatSeqDB
Tools
SEQ ID NO
7
Length
21
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
C. elegans
Determined organism
  • Caenorhabditis elegans

    Caenorhabditis elegans

    • Public DB hit
      GI:1109862
      U41540
    • Hit length
      27,102 bp
    • E Value
      2.55E-2
    • BLAST Score
      42.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      U41540
      0.08% cov
    • Alignment Length
      21 bp
    • CIGAR string
      21M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
8
Length
24
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
C. elegans
Determined organism
  • Caenorhabditis elegans

    Caenorhabditis elegans

    • Public DB hit
      GI:1109862
      U41540
    • Hit length
      27,102 bp
    • E Value
      6.88E-4
    • BLAST Score
      48.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      U41540
      0.09% cov
    • Alignment Length
      24 bp
    • CIGAR string
      24M mismatches: 0 - insertions: 0 - deletions: 0
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
9
Length
448
Sequence Type
peptide
Locations
Undetermined
Declared organism
Homo sapiens
Determined organism
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:30584235
      AAP36366
    • Hit length
      449 aa
    • E Value
      0E0
    • BLAST Score
      913.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      AAP36366
      99.78% cov
    • Alignment Length
      448 aa
    • CIGAR string
      419MN28M mismatches: 1 - insertions: 0 - deletions: 0
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:55664430
      CAH73111
      1 of 5 hits reported for Homo sapiens.
    • Hit length
      481 aa
    • E Value
      0E0
    • BLAST Score
      913.7 bits
    • Similarity
      99.78%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      CAH73111
      93.14% cov
    • Alignment Length
      448 aa
    • CIGAR string
      419MN28M mismatches: 1 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197097324
      NP_001125243
    • Hit length
      448 aa
    • E Value
      0E0
    • BLAST Score
      911.8 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_001125243
      100% cov
    • Alignment Length
      448 aa
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297280647
      XP_001087264
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      481 aa
    • E Value
      0E0
    • BLAST Score
      911.8 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_001087264
      93.14% cov
    • Alignment Length
      448 aa
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332812085
      XP_001142009
    • Hit length
      448 aa
    • E Value
      0E0
    • BLAST Score
      911 bits
    • Similarity
      99.55%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_001142009
      100% cov
    • Alignment Length
      448 aa
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:118403880
      NP_001072134
    • Hit length
      448 aa
    • E Value
      0E0
    • BLAST Score
      852 bits
    • Similarity
      98.44%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_001072134
      100% cov
    • Alignment Length
      448 aa
  • Mus musculus

    Mus musculus

    • Public DB hit
      GI:190684661
      NP_035313
      1 of 2 hits reported for Mus musculus.
    • Hit length
      448 aa
    • E Value
      0E0
    • BLAST Score
      836.6 bits
    • Similarity
      97.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NP_035313
      100% cov
    • Alignment Length
      448 aa
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149748722
      XP_001489764
    • Hit length
      448 aa
    • E Value
      0E0
    • BLAST Score
      835.5 bits
    • Similarity
      97.1%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_001489764
      100% cov
    • Alignment Length
      448 aa
  • Canis lupus familiaris

    Canis lupus familiaris

    • Public DB hit
      GI:73961465
      XP_547503
    • Hit length
      717 aa
    • E Value
      0E0
    • BLAST Score
      835.1 bits
    • Similarity
      96.88%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XP_547503
      62.48% cov
    • Alignment Length
      448 aa
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
10
Length
27
Sequence Type
nucleotide
Locations
Detailed Description
Declared organism
Homo sapiens
Determined organism
Occurrence
4 times in PatSeqDB
Tools

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