Methods And Kits For Diagnosis Of Multiple Sclerosis In Probable Multiple Sclerosis Subjects

  • Published: Jul 10, 2008
  • Earliest Priority: Dec 29 2006
  • Family: 8
  • Cited Works: 0
  • Cited by: 0
  • Cites: 0
  • Sequences: 58
  • Additional Info: Full text
Data obtained from: EMBL-EBI Pat DDBJ Pat EPO Sequence Listings NCBI GenBank (EBI)
58 sequences found in this patent (in total)

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Displaying 1 - 10 of 58 sequences

SEQ ID NO
Length
Sequence Type
Locations
Declared organism
Determined organism
Occurrence
Tools
SEQ ID NO
1
Length
1,578
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:4426911
      AF112977
      1 of 11 hits reported for Homo sapiens.
    • Hit length
      1,578 bp
    • E Value
      0E0
    • BLAST Score
      2,915.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      AF112977
      100% cov
    • Alignment Length
      1,578 bp
    • CIGAR string
      1578M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:114629407
      XM_507662
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,620 bp
    • E Value
      0E0
    • BLAST Score
      2,821 bits
    • Similarity
      98.92%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 1
      100% cov
      XM_507662
      97.41% cov
    • Alignment Length
      1,580 bp
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297686052
      XR_094300
    • Hit length
      1,552 bp
    • E Value
      0E0
    • BLAST Score
      2,508.9 bits
    • Similarity
      95.8%
    • Coverage
      99.11%
    • Alignment (schematic)

      SEQ ID NO 1
      99.11% cov
      XR_094300
      99.74% cov
    • Alignment Length
      1,571 bp
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332217119
      XM_003257657
    • Hit length
      1,306 bp
    • E Value
      0E0
    • BLAST Score
      2,141.4 bits
    • Similarity
      96.39%
    • Coverage
      82.38%
    • Alignment (schematic)

      SEQ ID NO 1
      82.38% cov
      XM_003257657
      99.54% cov
    • Alignment Length
      1,303 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:306774107
      NM_001195489
    • Hit length
      1,227 bp
    • E Value
      0E0
    • BLAST Score
      1,938.3 bits
    • Similarity
      95.14%
    • Coverage
      78.07%
    • Alignment (schematic)

      SEQ ID NO 1
      78.07% cov
      NM_001195489
      100% cov
    • Alignment Length
      1,234 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:123995018
      DQ894185
      1 of 2 hits reported for synthetic construct.
    • Hit length
      1,057 bp
    • E Value
      0E0
    • BLAST Score
      1,879.2 bits
    • Similarity
      100%
    • Coverage
      64.45%
    • Alignment (schematic)

      SEQ ID NO 1
      64.45% cov
      DQ894185
      96.22% cov
    • Alignment Length
      1,017 bp
Occurrence
4 times in PatSeqDB
Tools
SEQ ID NO
2
Length
1,995
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
Occurrence
6 times in PatSeqDB
Tools
SEQ ID NO
3
Length
1,403
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:6274523
      AF041811
      1 of 7 hits reported for Homo sapiens.
    • Hit length
      1,403 bp
    • E Value
      0E0
    • BLAST Score
      2,592 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 3
      100% cov
      AF041811
      100% cov
    • Alignment Length
      1,403 bp
    • CIGAR string
      1403M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297697358
      XM_002825780
      1 of 4 hits reported for Pongo abelii.
    • Hit length
      2,710 bp
    • E Value
      0E0
    • BLAST Score
      1,906.9 bits
    • Similarity
      98.88%
    • Coverage
      76.19%
    • Alignment (schematic)

      SEQ ID NO 3
      76.19% cov
      XM_002825780
      39.41% cov
    • Alignment Length
      1,069 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:109082267
      XM_001088203
    • Hit length
      2,871 bp
    • E Value
      0E0
    • BLAST Score
      1,849.6 bits
    • Similarity
      97.94%
    • Coverage
      76.05%
    • Alignment (schematic)

      SEQ ID NO 3
      76.05% cov
      XM_001088203
      37.16% cov
    • Alignment Length
      1,067 bp
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:84579126
      AB220464
      1 of 2 hits reported for Macaca fascicularis.
    • Hit length
      2,570 bp
    • E Value
      0E0
    • BLAST Score
      1,807.1 bits
    • Similarity
      97.63%
    • Coverage
      75.12%
    • Alignment (schematic)

      SEQ ID NO 3
      75.12% cov
      AB220464
      40.97% cov
    • Alignment Length
      1,054 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296204131
      XM_002749150
    • Hit length
      2,806 bp
    • E Value
      0E0
    • BLAST Score
      1,742.5 bits
    • Similarity
      96.24%
    • Coverage
      75.84%
    • Alignment (schematic)

      SEQ ID NO 3
      75.84% cov
      XM_002749150
      37.85% cov
    • Alignment Length
      1,064 bp
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:77627780
      NM_001034123
    • Hit length
      2,478 bp
    • E Value
      0E0
    • BLAST Score
      1,622.5 bits
    • Similarity
      99.44%
    • Coverage
      63.65%
    • Alignment (schematic)

      SEQ ID NO 3
      63.65% cov
      NM_001034123
      36.04% cov
    • Alignment Length
      893 bp
  • Equus caballus

    Equus caballus

    • Public DB hit
      GI:149690977
      XM_001499573
    • Hit length
      2,445 bp
    • E Value
      0E0
    • BLAST Score
      1,511.7 bits
    • Similarity
      92.33%
    • Coverage
      75.69%
    • Alignment (schematic)

      SEQ ID NO 3
      75.69% cov
      XM_001499573
      43.64% cov
    • Alignment Length
      1,069 bp
  • Saimiri boliviensis

    Saimiri boliviensis

    • Public DB hit
      GI:56122265
      AY665246
    • Hit length
      2,478 bp
    • E Value
      0E0
    • BLAST Score
      1,465.5 bits
    • Similarity
      96.08%
    • Coverage
      63.65%
    • Alignment (schematic)

      SEQ ID NO 3
      63.65% cov
      AY665246
      36.04% cov
    • Alignment Length
      893 bp
  • Bos taurus

    Bos taurus

    • Public DB hit
      GI:330688439
      NM_001206483
    • Hit length
      3,468 bp
    • E Value
      0E0
    • BLAST Score
      1,460 bits
    • Similarity
      91.91%
    • Coverage
      74.13%
    • Alignment (schematic)

      SEQ ID NO 3
      74.13% cov
      NM_001206483
      30.28% cov
    • Alignment Length
      1,051 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
4
Length
423
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
5
Length
1,207
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:691766
      M86609
      1 of 18 hits reported for Homo sapiens.
    • Hit length
      1,207 bp
    • E Value
      0E0
    • BLAST Score
      2,230 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 5
      100% cov
      M86609
      100% cov
    • Alignment Length
      1,207 bp
    • CIGAR string
      1207M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197100513
      NM_001131331
    • Hit length
      3,404 bp
    • E Value
      0E0
    • BLAST Score
      2,023.2 bits
    • Similarity
      97.09%
    • Coverage
      99.5%
    • Alignment (schematic)

      SEQ ID NO 5
      99.5% cov
      NM_001131331
      35.25% cov
    • Alignment Length
      1,201 bp
    • CIGAR string
      1H41MN41MN46MN5MN2MN206MN3MN34MN69MN169MN44MN9M2N24MN46MN33MN44MN12MN13MN20MN6MN23MN89MN6MN7MN23MN52MN2MN5MN10MN8MN9MN4MN17MD32MN12M5H mismatches: 34 - insertions: 0 - deletions: 1
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332216991
      XM_003257588
      1 of 3 hits reported for Nomascus leucogenys.
    • Hit length
      2,044 bp
    • E Value
      0E0
    • BLAST Score
      1,991.8 bits
    • Similarity
      96.59%
    • Coverage
      99.5%
    • Alignment (schematic)

      SEQ ID NO 5
      99.5% cov
      XM_003257588
      58.76% cov
    • Alignment Length
      1,202 bp
    • CIGAR string
      1H13MN5MN5MN57MN23MN22MN5MN2MN24MI2MD96MN67MN14MN38MN27MN4MN14MN11MN9MN40MN22MN57MN49MN42MN9M2N24MN80MN44MN12MNMN32MN6MN113MN27MN10MN19MN4MN27MN2MN16MN87M5H mismatches: 39 - insertions: 1 - deletions: 1
Occurrence
22 times in PatSeqDB
Tools
SEQ ID NO
6
Length
1,883
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:556650
      X78342
      1 of 16 hits reported for Homo sapiens.
    • Hit length
      1,883 bp
    • E Value
      0E0
    • BLAST Score
      3,478.4 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 6
      100% cov
      X78342
      100% cov
    • Alignment Length
      1,883 bp
    • CIGAR string
      1883M mismatches: 0 - insertions: 0 - deletions: 0
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297699488
      XM_002826772
    • Hit length
      1,783 bp
    • E Value
      0E0
    • BLAST Score
      2,965 bits
    • Similarity
      97.16%
    • Coverage
      93.1%
    • Alignment (schematic)

      SEQ ID NO 6
      93.1% cov
      XM_002826772
      98.6% cov
    • Alignment Length
      1,760 bp
    • CIGAR string
      111H20MN5MN4MN174MN89MN119MN5MN89M2I3MI9MN36MN67MN19MN33MN8MN26MN17MN35MI3MD41MN59MN95MN77MN86MN20MN24MN27MN35MN8MN24M2N2MI35MN4MN15MN68MN21MN16MD16MN24MN23MN9MN15MI37MN41MI34MN16MN30MN39MN8M19H mismatches: 41 - insertions: 7 - deletions: 2
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332263284
      XM_003280633
    • Hit length
      1,330 bp
    • E Value
      0E0
    • BLAST Score
      2,172.8 bits
    • Similarity
      96.44%
    • Coverage
      69.94%
    • Alignment (schematic)

      SEQ ID NO 6
      69.94% cov
      XM_003280633
      98.87% cov
    • Alignment Length
      1,320 bp
    • CIGAR string
      108H5MN22MN5MN171MN2MN50MN131MN32MN24MN37MI4MD34MN83MN14MN15MN13MN38MN5MN11MN8MN23MN29MI3MD14MN11MN14MN59MN8MN86MN77MN53MN2MN20MN8MNMN6MN11MNMN21MN28MN14M2D34MN19MNMN5MI9MD12M458H mismatches: 39 - insertions: 3 - deletions: 5
Occurrence
21 times in PatSeqDB
Tools
SEQ ID NO
7
Length
1,774
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:7706155
      NM_016618
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      1,774 bp
    • E Value
      0E0
    • BLAST Score
      3,277.1 bits
    • Similarity
      100%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 7
      100% cov
      NM_016618
      100% cov
    • Alignment Length
      1,774 bp
    • CIGAR string
      1774M mismatches: 0 - insertions: 0 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332813732
      XM_001139925
      1 of 2 hits reported for Pan troglodytes.
    • Hit length
      1,789 bp
    • E Value
      0E0
    • BLAST Score
      3,090.6 bits
    • Similarity
      98.57%
    • Coverage
      98.82%
    • Alignment (schematic)

      SEQ ID NO 7
      98.82% cov
      XM_001139925
      97.48% cov
    • Alignment Length
      1,754 bp
    • CIGAR string
      35MD5MI3MN217MN37MN322M2N89MN79MNMN14MDMDMD560MN73MN7MN6D45MN86MN57MN97M21H mismatches: 14 - insertions: 1 - deletions: 10
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332239275
      XM_003268784
      1 of 2 hits reported for Nomascus leucogenys.
    • Hit length
      1,648 bp
    • E Value
      0E0
    • BLAST Score
      2,789.6 bits
    • Similarity
      97.27%
    • Coverage
      92.67%
    • Alignment (schematic)

      SEQ ID NO 7
      92.67% cov
      XM_003268784
      99.88% cov
    • Alignment Length
      1,648 bp
    • CIGAR string
      109H108MN33MN2MN2MN31MN18MN49MN21MN122MN121MN30M2N56MN47MN30MIMD26MN42MN28MN47MN3MN11MN53MN2MN49MN24MNMN89MN56MN3MN57MN4MI2MI20MN13MN37MI2MD68MN8MN19MN93MN75MN5MN30MN5MN60M21H mismatches: 39 - insertions: 4 - deletions: 2
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:197100208
      NM_001133067
      1 of 2 hits reported for Pongo abelii.
    • Hit length
      1,590 bp
    • E Value
      0E0
    • BLAST Score
      2,619.7 bits
    • Similarity
      97.11%
    • Coverage
      87.66%
    • Alignment (schematic)

      SEQ ID NO 7
      87.66% cov
      NM_001133067
      97.55% cov
    • Alignment Length
      1,557 bp
    • CIGAR string
      217H17MN16MN2MN7MN16MN9MN18MN61MN9MN122MN54MN27MN16MN16MN4MN88MN39MN39MN21M3D97MN29MN10MN99MN34MN88MN56MN3MN57MN4MI2MI34MN10MN15MN12MD33M2D33MN122MN75MN5MN36MN15MN44MN18M2H mismatches: 37 - insertions: 2 - deletions: 6
Occurrence
25 times in PatSeqDB
Tools
SEQ ID NO
8
Length
1,597
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:24270815
      U16307
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      1,616 bp
    • E Value
      0E0
    • BLAST Score
      2,929.9 bits
    • Similarity
      99.75%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      U16307
      98.95% cov
    • Alignment Length
      1,599 bp
    • CIGAR string
      456MN251MI30MN11MI847M mismatches: 2 - insertions: 2 - deletions: 0
  • Pan troglodytes

    Pan troglodytes

    • Public DB hit
      GI:332839905
      XM_522475
    • Hit length
      1,738 bp
    • E Value
      0E0
    • BLAST Score
      2,660.3 bits
    • Similarity
      96.56%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 8
      100% cov
      XM_522475
      93.21% cov
    • Alignment Length
      1,629 bp
    • CIGAR string
      58MI24MD6MD183MN118MN11MN14MN36MN251MI30MN11MI169MN21MD4MD18MD3MD5MI3MI7MN76MN28MD51MIMD13M3IMIMI2MI101MN79MI69MN6MIM2IMI23MN2MIMI2MIMI2MIMIMI2MIMD5MIMI3MI3MIMI2MI3MI28MN15MN61MN13M mismatches: 15 - insertions: 32 - deletions: 9
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332220931
      XM_003259563
    • Hit length
      1,134 bp
    • E Value
      0E0
    • BLAST Score
      1,700 bits
    • Similarity
      96.87%
    • Coverage
      63.68%
    • Alignment (schematic)

      SEQ ID NO 8
      63.68% cov
      XM_003259563
      89.59% cov
    • Alignment Length
      1,022 bp
    • CIGAR string
      58MI24MD6MD43MN19MN44MN111MN36MN20MN35MN51MN5MN109MN23MN23MN86MI31MN6MN3MI140MN29MN21MD4MD12MN4MND3MD5MI3MI7MN8MN7MN14M580H mismatches: 21 - insertions: 5 - deletions: 6
  • Pongo abelii

    Pongo abelii

    • Public DB hit
      GI:297692477
      XM_002823532
    • Hit length
      1,092 bp
    • E Value
      0E0
    • BLAST Score
      1,674.2 bits
    • Similarity
      97.75%
    • Coverage
      60.99%
    • Alignment (schematic)

      SEQ ID NO 8
      60.99% cov
      XM_002823532
      88.92% cov
    • Alignment Length
      977 bp
    • CIGAR string
      1H57MI24MD6MD19MN23MN117MN90MN61MN17MN33MN12MN150MN87MI30MN6MN4MI139MN29MN21MD4MD18MD3MD5M622H mismatches: 13 - insertions: 3 - deletions: 6
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297262996
      XM_001117594
    • Hit length
      1,607 bp
    • E Value
      0E0
    • BLAST Score
      1,615.1 bits
    • Similarity
      94%
    • Coverage
      66.5%
    • Alignment (schematic)

      SEQ ID NO 8
      66.5% cov
      XM_001117594
      67.02% cov
    • Alignment Length
      1,083 bp
    • CIGAR string
      12M4I10MN20MN3MN10MI24MD6MD43MN33MN72MN60M2N39MN34MN21MI3MDMN35MN15MN9MN48MN36MN19MN47MN39MN47MNMI28MN6MN4MI64MNMN72MN22MN6MN5MN15MN2MN7M10I12MND3MD5MI3MI7MN4MI3MD3MN3M2N3MN23MN15MN15M535H mismatches: 38 - insertions: 21 - deletions: 6
  • Macaca fascicularis

    Macaca fascicularis

    • Public DB hit
      GI:90081163
      AB173000
    • Hit length
      1,547 bp
    • E Value
      0E0
    • BLAST Score
      1,615.1 bits
    • Similarity
      94%
    • Coverage
      66.5%
    • Alignment (schematic)

      SEQ ID NO 8
      66.5% cov
      AB173000
      69.62% cov
    • Alignment Length
      1,083 bp
    • CIGAR string
      12M4I10MN20MN3MN10MI24MD6MD43MN33MN72MN60M2N39MN34MN21MI3MDMN35MN15MN9MN48MN36MN19MN47MN39MN47MNMI28MN6MN4MI64MNMN72MN22MN6MN5MN15MN2MN7M10I12MND3MD5MI3MI7MN4MI3MD3MN3M2N3MN23MN15MN15M535H mismatches: 38 - insertions: 21 - deletions: 6
Occurrence
14 times in PatSeqDB
Tools
SEQ ID NO
9
Length
734
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:45597173
      NM_006166
      1 of 8 hits reported for Homo sapiens.
    • Hit length
      3,482 bp
    • E Value
      0E0
    • BLAST Score
      1,334.4 bits
    • Similarity
      99.46%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      NM_006166
      21.08% cov
    • Alignment Length
      734 bp
    • CIGAR string
      111MN2MN5MN581MN31M mismatches: 4 - insertions: 0 - deletions: 0
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332241653
      XM_003269946
    • Hit length
      3,556 bp
    • E Value
      0E0
    • BLAST Score
      1,277.2 bits
    • Similarity
      98.88%
    • Coverage
      97.41%
    • Alignment (schematic)

      SEQ ID NO 9
      97.41% cov
      XM_003269946
      20.11% cov
    • Alignment Length
      715 bp
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296212747
      XM_002752927
      1 of 5 hits reported for Callithrix jacchus.
    • Hit length
      1,516 bp
    • E Value
      0E0
    • BLAST Score
      1,240.2 bits
    • Similarity
      97.14%
    • Coverage
      100%
    • Alignment (schematic)

      SEQ ID NO 9
      100% cov
      XM_002752927
      48.42% cov
    • Alignment Length
      735 bp
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297263402
      XM_001097708
      1 of 2 hits reported for Macaca mulatta.
    • Hit length
      3,396 bp
    • E Value
      0E0
    • BLAST Score
      1,232.8 bits
    • Similarity
      97.77%
    • Coverage
      97.41%
    • Alignment (schematic)

      SEQ ID NO 9
      97.41% cov
      XM_001097708
      21.05% cov
    • Alignment Length
      716 bp
  • synthetic construct

    synthetic construct

    • Public DB hit
      GI:168144877
      CU675107
      1 of 4 hits reported for synthetic construct.
    • Hit length
      1,324 bp
    • E Value
      0E0
    • BLAST Score
      1,131.3 bits
    • Similarity
      99.36%
    • Coverage
      85.01%
    • Alignment (schematic)

      SEQ ID NO 9
      85.01% cov
      CU675107
      47.13% cov
    • Alignment Length
      624 bp
Occurrence
3 times in PatSeqDB
Tools
SEQ ID NO
10
Length
4,423
Sequence Type
DNA
Locations
Claims, Fulltext
Declared organism
Homo sapiens
Determined organism
  • Nomascus leucogenys

    Nomascus leucogenys

    • Public DB hit
      GI:332248712
      XM_003273461
      1 of 3 hits reported for Nomascus leucogenys.
    • Hit length
      4,731 bp
    • E Value
      0E0
    • BLAST Score
      7,544.7 bits
    • Similarity
      97.33%
    • Coverage
      99.64%
    • Alignment (schematic)

      SEQ ID NO 10
      99.64% cov
      XM_003273461
      93.32% cov
    • Alignment Length
      4,427 bp
    • CIGAR string
      84MN32MN7MN76MN112MD312MN374MN122MN152MN50MN80MN115MD8M2N65MN13MN6MN85MI9MN4M3N15MI4MN10I50MN13MD96MN116MN32MN17MN8MN77MN52MN20MN26MN5MN13MN39MN34MN14MD5MI14M2N18MN41M2N66MN37MN152MN105M4NMNM3N2M6N91MI10MN23MN21MD57MI21MN25MN6M2N30MN93MN91MI36MN102MN18MN31MN3M2D2M2D292MN21MN33MN13MN36MN46MD25MN12M2D20MN34MN46MNMI2MNI13MN41MN3MN12MN19MI57MI17MN14MN32MN6MN75M16H mismatches: 86 - insertions: 20 - deletions: 12
  • Macaca mulatta

    Macaca mulatta

    • Public DB hit
      GI:297260100
      XM_001112324
      1 of 4 hits reported for Macaca mulatta.
    • Hit length
      4,452 bp
    • E Value
      0E0
    • BLAST Score
      7,443.1 bits
    • Similarity
      96.87%
    • Coverage
      99.64%
    • Alignment (schematic)

      SEQ ID NO 10
      99.64% cov
      XM_001112324
      99.53% cov
    • Alignment Length
      4,438 bp
    • CIGAR string
      22MN61MN40MNMN26MN47MN15MN91MN4MD258MN272MN482MN5MN190MD8M2N79MN6MN3MN81MI9MN4M3N15MI4MN8I2MI76MD35MN37MN8MN22MD8MN27MN3MN5MN35MN11M3I32MN26MN44MN7MN24MN19MN49MN30MN5MN19MN34MN21MN26MN19MN53MN30MN44MN20MD11MN4MN67MN8MN74M2N105M4NMNM3N2M6N87MI38MN21MD57MI21MN25MN6M2N12M2I114MN49MN39MI21MN14MN99MN2MN4MN28MN16MN9MN265MN4MN20MN69MN83MD27MN3MI7MI2M2I6MN48MN46M2I4MN38MN11MNMN2MN3MN85MN20MN8MI6MN32MN6MN5MN44M5I25M16H mismatches: 101 - insertions: 31 - deletions: 7
  • Callithrix jacchus

    Callithrix jacchus

    • Public DB hit
      GI:296199949
      XM_002747419
    • Hit length
      3,788 bp
    • E Value
      0E0
    • BLAST Score
      5,831 bits
    • Similarity
      95.31%
    • Coverage
      82.27%
    • Alignment (schematic)

      SEQ ID NO 10
      82.27% cov
      XM_002747419
      96.49% cov
    • Alignment Length
      3,670 bp
  • Homo sapiens

    Homo sapiens

    • Public DB hit
      GI:228008319
      NG_011970
      1 of 3 hits reported for Homo sapiens.
    • Hit length
      68,145 bp
    • E Value
      0E0
    • BLAST Score
      5,373 bits
    • Similarity
      98.96%
    • Coverage
      67.24%
    • Alignment (schematic)

      SEQ ID NO 10
      67.24% cov
      NG_011970
      4.36% cov
    • Alignment Length
      2,975 bp
  • Sus scrofa

    Sus scrofa

    • Public DB hit
      GI:335304614
      XM_003134359
      1 of 4 hits reported for Sus scrofa.
    • Hit length
      4,242 bp
    • E Value
      0E0
    • BLAST Score
      5,219.8 bits
    • Similarity
      89.72%
    • Coverage
      92.61%
    • Alignment (schematic)

      SEQ ID NO 10
      92.61% cov
      XM_003134359
      96.02% cov
    • Alignment Length
      4,172 bp
Occurrence
3 times in PatSeqDB
Tools

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